Wall clock time and date at job start Tue Mar 31 2020 20:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21289 * 119.99682 * 2 1 4 4 N 1.34772 * 120.00429 * 179.97438 * 2 1 3 5 5 C 1.47158 * 120.98262 * 0.02562 * 4 2 1 6 6 C 1.53293 * 108.38343 * 129.47964 * 5 4 2 7 7 O 1.42964 * 109.22275 * 52.30865 * 6 5 4 8 8 C 1.42964 * 114.16565 * 297.41412 * 7 6 5 9 9 H 1.08998 * 109.51016 * 302.65918 * 8 7 6 10 10 C 1.50696 * 109.51369 * 182.50248 * 8 7 6 11 11 O 1.21284 * 120.00143 * 347.52306 * 10 8 7 12 12 N 1.34770 * 120.00263 * 167.52119 * 10 8 7 13 13 C 1.46508 * 119.99906 * 4.22555 * 12 10 8 14 14 C 1.50704 * 109.46938 * 95.77311 * 13 12 10 15 15 H 1.08001 * 119.99878 * 0.02562 * 14 13 12 16 16 C 1.37869 * 120.00065 * 179.97438 * 14 13 12 17 17 N 1.31521 * 119.99779 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00235 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47008 * 90.00163 * 18 16 14 20 20 H 1.48498 * 109.46944 * 210.00144 * 18 16 14 21 21 H 1.48498 * 109.47071 * 329.99906 * 18 16 14 22 22 C 1.46503 * 120.00399 * 184.22701 * 12 10 8 23 23 C 1.52991 * 109.47106 * 90.23543 * 22 12 10 24 24 F 1.39911 * 109.47419 * 64.21100 * 23 22 12 25 25 F 1.39903 * 109.47340 * 184.20808 * 23 22 12 26 26 F 1.39897 * 109.47506 * 304.20939 * 23 22 12 27 27 C 1.47154 * 120.98477 * 180.02562 * 4 2 1 28 28 H 1.08995 * 109.47001 * 240.00189 * 1 2 3 29 29 H 1.08999 * 109.46938 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.46451 * 120.00436 * 1 2 3 31 31 H 1.09003 * 109.67729 * 9.75847 * 5 4 2 32 32 H 1.08996 * 109.71128 * 249.22695 * 5 4 2 33 33 H 1.08999 * 109.51725 * 292.37972 * 6 5 4 34 34 H 1.09005 * 109.50834 * 172.22500 * 6 5 4 35 35 H 1.08997 * 109.47482 * 215.77544 * 13 12 10 36 36 H 1.09003 * 109.46679 * 335.78010 * 13 12 10 37 37 H 0.97000 * 119.99445 * 179.97438 * 17 16 14 38 38 H 1.09000 * 109.47194 * 210.23750 * 22 12 10 39 39 H 1.08994 * 109.46836 * 330.23568 * 22 12 10 40 40 H 1.08997 * 109.68607 * 110.79573 * 27 4 2 41 41 H 1.09001 * 109.68203 * 350.23458 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 1.4672 -2.4540 0.0005 6 6 2.0420 -3.3256 -1.1219 7 8 3.4640 -3.3884 -0.9878 8 6 4.1207 -2.1255 -1.1209 9 1 3.8724 -1.6861 -2.0870 10 6 5.6118 -2.3208 -1.0237 11 8 6.0608 -3.3783 -0.6351 12 7 6.4463 -1.3204 -1.3687 13 6 5.9051 -0.0133 -1.7494 14 6 5.9100 0.9008 -0.5513 15 1 6.2798 0.5440 0.3987 16 6 5.4435 2.1929 -0.6680 17 7 4.9937 2.6276 -1.8249 18 14 5.4503 3.3262 0.8169 19 1 6.7395 4.0609 0.8730 20 1 4.3320 4.2967 0.7040 21 1 5.2846 2.5219 2.0542 22 6 7.8948 -1.5398 -1.3630 23 6 8.3408 -2.0362 -2.7397 24 9 8.1056 -1.0399 -3.6934 25 9 9.7067 -2.3371 -2.7070 26 9 7.6182 -3.1853 -3.0778 27 6 3.6523 -1.1923 0.0011 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3632 -0.5139 -0.8900 31 1 0.4047 -2.2844 -0.1739 32 1 1.6068 -2.9518 0.9601 33 1 1.7862 -2.8906 -2.0880 34 1 1.6251 -4.3304 -1.0522 35 1 6.5202 0.4189 -2.5387 36 1 4.8835 -0.1342 -2.1099 37 1 4.6651 3.5366 -1.9069 38 1 8.4032 -0.6038 -1.1319 39 1 8.1463 -2.2856 -0.6089 40 1 4.0128 -1.5627 0.9607 41 1 4.0367 -0.1873 -0.1731 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933810233.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:28 Heat of formation + Delta-G solvation = -274.306605 kcal Electronic energy + Delta-G solvation = -32181.642130 eV Core-core repulsion = 27260.573593 eV Total energy + Delta-G solvation = -4921.068537 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.09428 -48.61249 -48.58472 -41.77913 -40.55062 -39.06652 -37.13388 -35.76732 -34.69713 -33.30487 -31.06060 -30.68436 -29.15991 -28.31956 -25.66644 -25.02435 -24.51507 -23.32668 -20.77525 -20.21142 -19.57550 -19.49965 -18.98930 -18.43137 -18.14571 -17.89671 -17.71651 -16.98340 -16.63536 -16.51787 -16.39281 -16.05169 -15.58581 -15.47506 -15.35210 -15.08131 -15.02858 -14.77118 -14.74182 -14.64741 -14.48239 -14.35173 -13.93987 -13.63025 -13.45107 -13.39306 -13.16164 -12.97920 -12.89059 -12.80910 -12.63070 -12.47122 -12.13584 -11.82520 -11.80050 -11.28885 -11.01320 -10.71382 -10.51676 -9.88621 -9.60423 -8.21565 -6.31648 1.19656 1.37400 1.43290 1.47587 1.53902 1.72485 1.86360 2.01114 2.41278 2.74620 2.85040 3.04666 3.16809 3.30281 3.52682 3.58786 3.74110 3.81034 4.04035 4.12834 4.21532 4.32132 4.34796 4.44346 4.52228 4.64444 4.68152 4.72886 4.89870 4.98690 5.08966 5.18567 5.36858 5.39560 5.69783 5.95037 5.97546 6.21694 6.45880 6.72702 6.96419 7.26586 7.39386 8.85137 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.009924 B = 0.005995 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2820.653912 B = 4669.324777 C = 6842.642794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.490 3.510 3 O -0.579 6.579 4 N -0.619 5.619 5 C 0.069 3.931 6 C 0.037 3.963 7 O -0.377 6.377 8 C 0.083 3.917 9 H 0.080 0.920 10 C 0.528 3.472 11 O -0.551 6.551 12 N -0.594 5.594 13 C 0.249 3.751 14 C -0.545 4.545 15 H 0.061 0.939 16 C 0.047 3.953 17 N -0.903 5.903 18 Si 0.944 3.056 19 H -0.269 1.269 20 H -0.295 1.295 21 H -0.276 1.276 22 C 0.079 3.921 23 C 0.438 3.562 24 F -0.187 7.187 25 F -0.177 7.177 26 F -0.190 7.190 27 C 0.076 3.924 28 H 0.118 0.882 29 H 0.085 0.915 30 H 0.116 0.884 31 H 0.140 0.860 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.146 0.854 35 H 0.033 0.967 36 H 0.028 0.972 37 H 0.264 0.736 38 H 0.143 0.857 39 H 0.131 0.869 40 H 0.059 0.941 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.592 -10.045 1.271 12.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.281 3.719 3 O -0.458 6.458 4 N -0.354 5.354 5 C -0.052 4.052 6 C -0.040 4.040 7 O -0.296 6.296 8 C 0.022 3.978 9 H 0.097 0.903 10 C 0.316 3.684 11 O -0.429 6.429 12 N -0.326 5.326 13 C 0.129 3.871 14 C -0.583 4.583 15 H 0.079 0.921 16 C -0.156 4.156 17 N -0.540 5.540 18 Si 0.771 3.229 19 H -0.194 1.194 20 H -0.221 1.221 21 H -0.201 1.201 22 C -0.047 4.047 23 C 0.382 3.618 24 F -0.168 7.168 25 F -0.158 7.158 26 F -0.171 7.171 27 C -0.048 4.048 28 H 0.136 0.864 29 H 0.104 0.896 30 H 0.135 0.865 31 H 0.157 0.843 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.163 0.837 35 H 0.051 0.949 36 H 0.046 0.954 37 H 0.073 0.927 38 H 0.161 0.839 39 H 0.149 0.851 40 H 0.077 0.923 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.052 -10.057 1.384 12.361 hybrid contribution 0.196 1.089 0.188 1.122 sum -6.856 -8.968 1.572 11.397 Atomic orbital electron populations 1.21945 0.87077 1.06053 1.06615 1.21989 0.92737 0.82311 0.74850 1.90853 1.71918 1.32677 1.50325 1.48342 1.05630 1.07482 1.73966 1.22790 0.99183 0.82582 1.00691 1.23449 0.79037 1.03419 0.98074 1.88005 1.21116 1.26983 1.93469 1.21919 0.89954 0.86140 0.99817 0.90274 1.20235 0.88618 0.83045 0.76548 1.90627 1.78365 1.27165 1.46711 1.47996 1.04675 1.13680 1.66202 1.19369 0.94530 0.77274 0.95879 1.21376 1.43784 0.96823 0.96308 0.92106 1.25329 0.93789 0.98981 0.97480 1.69951 1.41133 1.17838 1.25092 0.85763 0.77230 0.79137 0.80722 1.19438 1.22099 1.20083 1.22624 0.83453 1.06992 0.91641 1.21400 0.74972 0.75261 0.90157 1.93192 1.94196 1.61428 1.67996 1.93166 1.32424 1.93407 1.96852 1.93175 1.78090 1.52036 1.93840 1.22350 0.81884 1.03714 0.96820 0.86353 0.89642 0.86546 0.84265 0.89525 0.91993 0.83669 0.94852 0.95378 0.92696 0.83916 0.85090 0.92260 0.85687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 8.69 71.24 0.62 -2.24 16 2 C 0.49 16.06 7.82 87.66 0.69 16.75 16 3 O -0.58 -26.92 16.56 -3.06 -0.05 -26.97 16 4 N -0.62 -18.87 3.02 -817.39 -2.47 -21.34 16 5 C 0.07 1.28 6.54 86.35 0.56 1.84 16 6 C 0.04 0.75 6.98 72.08 0.50 1.26 16 7 O -0.38 -12.49 9.95 -130.27 -1.30 -13.78 16 8 C 0.08 3.15 2.35 29.94 0.07 3.22 16 9 H 0.08 3.08 6.89 -2.39 -0.02 3.06 16 10 C 0.53 21.83 6.47 87.66 0.57 22.40 16 11 O -0.55 -24.36 15.78 15.66 0.25 -24.12 16 12 N -0.59 -24.04 2.38 -826.16 -1.96 -26.01 16 13 C 0.25 11.55 4.56 85.63 0.39 11.94 16 14 C -0.54 -27.40 6.96 25.60 0.18 -27.22 16 15 H 0.06 3.05 7.81 -2.91 -0.02 3.03 16 16 C 0.05 2.52 5.46 84.65 0.46 2.99 16 17 N -0.90 -50.73 13.29 21.45 0.28 -50.44 16 18 Si 0.94 44.50 29.54 68.60 2.03 46.52 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 20 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 21 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 22 C 0.08 2.67 5.49 86.38 0.47 3.14 16 23 C 0.44 14.77 3.30 71.98 0.24 15.01 16 24 F -0.19 -6.79 16.28 44.97 0.73 -6.06 16 25 F -0.18 -5.36 17.32 44.97 0.78 -4.58 16 26 F -0.19 -7.04 16.34 44.97 0.73 -6.30 16 27 C 0.08 2.96 5.57 86.34 0.48 3.44 16 28 H 0.12 1.35 8.02 -2.39 -0.02 1.33 16 29 H 0.08 1.69 8.12 -2.39 -0.02 1.67 16 30 H 0.12 1.38 7.66 -2.39 -0.02 1.36 16 31 H 0.14 1.30 6.05 -2.39 -0.01 1.28 16 32 H 0.09 1.48 8.14 -2.39 -0.02 1.47 16 33 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.15 1.89 8.14 -2.38 -0.02 1.87 16 35 H 0.03 1.64 7.20 -2.39 -0.02 1.62 16 36 H 0.03 1.40 5.50 -2.39 -0.01 1.39 16 37 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 38 H 0.14 4.42 8.07 -2.39 -0.02 4.41 16 39 H 0.13 4.14 7.36 -2.39 -0.02 4.12 16 40 H 0.06 2.34 8.13 -2.39 -0.02 2.32 16 41 H 0.13 5.93 3.35 -2.39 -0.01 5.92 16 Total: -1.00 -73.27 348.88 5.34 -67.93 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: 1.09 Total: 12.61 kcal Atomic # 6 Polarization: 47.30 SS G_CDS: 5.23 Total: 52.53 kcal Atomic # 7 Polarization: -93.64 SS G_CDS: -4.15 Total: -97.79 kcal Atomic # 8 Polarization: -63.76 SS G_CDS: -1.10 Total: -64.86 kcal Atomic # 9 Polarization: -19.18 SS G_CDS: 2.25 Total: -16.94 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -73.27 5.34 -67.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933810233.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -206.381 kcal (2) G-P(sol) polarization free energy of solvation -73.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -279.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -274.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds