Wall clock time and date at job start Tue Mar 31 2020 20:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.46843 * 2 1 4 4 C 1.34776 * 120.00472 * 253.41915 * 3 2 1 5 5 O 1.21589 * 120.00295 * 179.88812 * 4 3 2 6 6 C 1.47481 * 119.99627 * 359.88746 * 4 3 2 7 7 C 1.39746 * 120.17943 * 27.99656 * 6 4 3 8 8 C 1.37731 * 119.92066 * 179.72324 * 7 6 4 9 9 C 1.38699 * 120.28311 * 0.57898 * 8 7 6 10 10 Cl 1.73604 * 119.81486 * 179.71936 * 9 8 7 11 11 C 1.38204 * 120.36517 * 359.69767 * 9 8 7 12 12 C 1.38640 * 120.07171 * 359.97438 * 11 9 8 13 13 O 1.35656 * 120.14491 * 180.02562 * 12 11 9 14 14 C 1.42898 * 116.99754 * 0.02562 * 13 12 11 15 15 C 1.46498 * 119.99751 * 73.42038 * 3 2 1 16 16 C 1.53500 * 114.20896 * 119.99976 * 15 3 2 17 17 N 1.47070 * 87.98333 * 87.51844 * 16 15 3 18 18 C 1.36935 * 136.05319 * 207.08512 * 17 16 15 19 19 H 1.08000 * 120.00508 * 7.00743 * 18 17 16 20 20 C 1.38805 * 119.99974 * 187.00793 * 18 17 16 21 21 N 1.31626 * 120.00013 * 5.65185 * 20 18 17 22 22 Si 1.86805 * 120.00308 * 185.65220 * 20 18 17 23 23 H 1.48497 * 109.47212 * 265.00720 * 22 20 18 24 24 H 1.48500 * 109.46915 * 25.00360 * 22 20 18 25 25 H 1.48497 * 109.47145 * 145.00682 * 22 20 18 26 26 C 1.47062 * 87.88723 * 27.34249 * 17 16 15 27 27 H 1.09003 * 109.47184 * 299.99444 * 1 2 3 28 28 H 1.09001 * 109.47635 * 59.99889 * 1 2 3 29 29 H 1.09002 * 109.47236 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46764 * 240.00775 * 2 1 3 31 31 H 1.08996 * 109.47232 * 119.99922 * 2 1 3 32 32 H 1.08002 * 120.03462 * 0.02562 * 7 6 4 33 33 H 1.07994 * 119.85435 * 180.29988 * 8 7 6 34 34 H 1.08003 * 119.96554 * 180.02562 * 11 9 8 35 35 H 1.09001 * 109.47229 * 300.00055 * 14 13 12 36 36 H 1.09004 * 109.47550 * 59.99982 * 14 13 12 37 37 H 1.08998 * 109.47366 * 179.97438 * 14 13 12 38 38 H 1.09003 * 113.28249 * 346.92904 * 15 3 2 39 39 H 1.08996 * 113.46114 * 332.73695 * 16 15 3 40 40 H 1.08997 * 113.46495 * 202.29728 * 16 15 3 41 41 H 0.97003 * 119.99784 * 179.97438 * 21 20 18 42 42 H 1.09008 * 113.46645 * 87.43626 * 26 17 16 43 43 H 1.09001 * 113.47134 * 217.87590 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.5569 1.9057 -1.1186 5 8 2.9603 3.0527 -1.1192 6 6 2.6570 1.0882 -2.3420 7 6 1.7417 0.0584 -2.5757 8 6 1.8367 -0.6981 -3.7228 9 6 2.8449 -0.4502 -4.6425 10 17 2.9577 -1.4159 -6.0807 11 6 3.7599 0.5615 -4.4205 12 6 3.6741 1.3365 -3.2742 13 8 4.5711 2.3303 -3.0550 14 6 5.5797 2.5245 -4.0485 15 6 1.9210 2.1925 1.2160 16 6 3.2710 2.6920 1.7490 17 7 3.1300 3.8583 0.8642 18 6 3.9812 4.7246 0.2316 19 1 5.0461 4.5460 0.2510 20 6 3.4753 5.8323 -0.4345 21 7 2.1909 6.1120 -0.3654 22 14 4.6171 6.9262 -1.4292 23 1 5.0571 8.0721 -0.5935 24 1 5.8031 6.1427 -1.8588 25 1 3.8987 7.4332 -2.6258 26 6 1.6725 3.6886 0.9630 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8932 -0.5137 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 0.9578 -0.1408 -1.8600 33 1 1.1259 -1.4904 -3.9046 34 1 4.5421 0.7491 -5.1412 35 1 6.1703 1.6139 -4.1495 36 1 5.1091 2.7600 -5.0030 37 1 6.2290 3.3479 -3.7510 38 1 1.2751 1.7534 1.9764 39 1 4.1079 2.0455 1.4850 40 1 3.2520 2.9463 2.8087 41 1 1.8375 6.8863 -0.8306 42 1 1.2322 4.2057 1.8157 43 1 1.1476 3.8912 0.0295 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000951564066.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:38 Heat of formation + Delta-G solvation = 88.547137 kcal Electronic energy + Delta-G solvation = -28902.898067 eV Core-core repulsion = 24980.129955 eV Total energy + Delta-G solvation = -3922.768113 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.65589 -39.30062 -37.69553 -36.75441 -35.93241 -35.12869 -31.89092 -30.81677 -30.34731 -29.69106 -27.41796 -27.00472 -24.40850 -24.12585 -23.25927 -22.41923 -22.20433 -20.37251 -18.41561 -17.60582 -16.85832 -16.52321 -16.29277 -15.64740 -15.43053 -15.31215 -14.65490 -14.49830 -14.25731 -14.02104 -13.58372 -13.40283 -13.35235 -13.01448 -12.87920 -12.38232 -12.31472 -12.09280 -11.77790 -11.75432 -11.51864 -11.27597 -11.11969 -11.09070 -10.97207 -10.93974 -10.61548 -10.45484 -10.42695 -9.84436 -9.65619 -9.12598 -8.84269 -8.66045 -8.24343 -8.05305 -7.65784 -6.28684 -5.39004 -2.61277 0.86318 1.30279 1.93839 3.27314 3.41350 3.57856 3.58141 3.61814 3.64692 4.15339 4.66600 4.77265 4.81687 4.95906 5.02348 5.08194 5.24367 5.27203 5.28820 5.39762 5.49914 5.53694 5.56567 5.66634 5.70686 5.80359 5.83881 5.92009 6.00638 6.07825 6.14114 6.19649 6.31526 6.48632 6.52872 6.64048 6.74700 7.09096 7.43836 7.47701 7.64569 7.88831 8.24385 8.33373 9.36101 9.39483 10.11862 11.02878 11.82365 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.011546 B = 0.005157 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.439300 B = 5428.044680 C = 7290.954250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.078 3.922 3 N -0.596 5.596 4 C 0.506 3.494 5 O -0.378 6.378 6 C -0.144 4.144 7 C -0.074 4.074 8 C -0.163 4.163 9 C 0.017 3.983 10 Cl -0.074 7.074 11 C -0.216 4.216 12 C 0.190 3.810 13 O -0.266 6.266 14 C 0.022 3.978 15 C 0.090 3.910 16 C 0.099 3.901 17 N -0.577 5.577 18 C -0.157 4.157 19 H 0.067 0.933 20 C -0.001 4.001 21 N -0.924 5.924 22 Si 0.898 3.102 23 H -0.298 1.298 24 H -0.285 1.285 25 H -0.296 1.296 26 C 0.161 3.839 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.101 0.899 31 H 0.065 0.935 32 H 0.169 0.831 33 H 0.135 0.865 34 H 0.140 0.860 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.104 0.896 38 H 0.083 0.917 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.244 0.756 42 H 0.030 0.970 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.408 -18.316 -5.822 19.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.045 4.045 3 N -0.334 5.334 4 C 0.289 3.711 5 O -0.242 6.242 6 C -0.148 4.148 7 C -0.092 4.092 8 C -0.182 4.182 9 C -0.010 4.010 10 Cl -0.045 7.045 11 C -0.235 4.235 12 C 0.141 3.859 13 O -0.177 6.177 14 C -0.073 4.073 15 C -0.015 4.015 16 C -0.029 4.029 17 N -0.302 5.302 18 C -0.284 4.284 19 H 0.085 0.915 20 C -0.195 4.195 21 N -0.574 5.574 22 Si 0.731 3.269 23 H -0.226 1.226 24 H -0.211 1.211 25 H -0.223 1.223 26 C 0.034 3.966 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.118 0.882 31 H 0.083 0.917 32 H 0.185 0.815 33 H 0.153 0.847 34 H 0.158 0.842 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.122 0.878 38 H 0.101 0.899 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.047 0.953 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.979 -17.246 -6.030 18.296 hybrid contribution 0.688 0.324 -1.033 1.282 sum -0.291 -16.922 -7.063 18.339 Atomic orbital electron populations 1.22300 0.96468 1.01734 1.03128 1.22239 0.94032 0.84647 1.03630 1.47270 1.63253 1.11941 1.10894 1.18199 0.81654 0.88683 0.82522 1.91543 1.38906 1.13443 1.80278 1.19971 0.97114 0.99738 0.97979 1.22095 0.98605 0.92226 0.96245 1.20852 0.99554 1.03383 0.94449 1.20745 0.97113 0.94054 0.89105 1.98362 1.97836 1.70526 1.37824 1.21012 1.03462 0.99435 0.99635 1.18902 0.88883 0.86746 0.91340 1.86499 1.38413 1.47616 1.45125 1.23166 0.90188 1.02242 0.91720 1.22857 0.98598 0.94273 0.85818 1.22844 0.95119 0.90786 0.94131 1.45226 1.01783 1.32566 1.50584 1.18439 0.87669 0.99125 1.23194 0.91533 1.24448 0.95657 0.97925 1.01519 1.69807 1.11280 1.28729 1.47538 0.86283 0.79880 0.80556 0.80159 1.22619 1.21091 1.22263 1.22198 0.88436 0.86602 0.99347 0.91576 0.91993 0.91870 0.88192 0.91664 0.81472 0.84695 0.84243 0.92860 0.92676 0.87776 0.89947 0.94822 0.94845 0.94619 0.95289 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.79 9.13 37.16 0.34 -1.45 16 2 C 0.08 0.94 5.62 -4.04 -0.02 0.92 16 3 N -0.60 -10.39 2.79 -166.97 -0.47 -10.86 16 4 C 0.51 10.49 6.95 -12.49 -0.09 10.41 16 5 O -0.38 -9.86 8.95 -14.29 -0.13 -9.99 16 6 C -0.14 -2.47 5.57 -104.84 -0.58 -3.06 16 7 C -0.07 -0.96 7.44 -39.20 -0.29 -1.26 16 8 C -0.16 -1.89 9.80 -39.60 -0.39 -2.28 16 9 C 0.02 0.21 6.32 -39.42 -0.25 -0.04 16 10 Cl -0.07 -0.80 28.94 -51.86 -1.50 -2.30 16 11 C -0.22 -2.96 8.80 -39.45 -0.35 -3.31 16 12 C 0.19 3.24 6.67 -38.71 -0.26 2.99 16 13 O -0.27 -5.11 8.95 -38.25 -0.34 -5.45 16 14 C 0.02 0.30 9.81 101.05 0.99 1.30 16 15 C 0.09 1.69 4.69 -67.67 -0.32 1.37 16 16 C 0.10 2.13 8.25 -8.50 -0.07 2.06 16 17 N -0.58 -15.37 2.13 -184.60 -0.39 -15.76 16 18 C -0.16 -4.65 8.45 -15.06 -0.13 -4.77 16 19 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 20 C 0.00 -0.02 5.16 -17.43 -0.09 -0.11 16 21 N -0.92 -29.18 11.80 55.49 0.66 -28.53 16 22 Si 0.90 23.98 29.56 -169.99 -5.02 18.95 16 23 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 24 H -0.28 -7.37 7.11 56.52 0.40 -6.96 16 25 H -0.30 -8.01 7.11 56.52 0.40 -7.61 16 26 C 0.16 3.92 6.16 -8.37 -0.05 3.87 16 27 H 0.07 0.70 7.78 -51.93 -0.40 0.30 16 28 H 0.06 0.68 7.11 -51.93 -0.37 0.31 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.10 1.13 3.84 -53.36 -0.20 0.92 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.17 1.85 2.91 -52.49 -0.15 1.70 16 33 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.14 1.63 6.30 -52.48 -0.33 1.30 16 35 H 0.05 0.58 7.66 -51.93 -0.40 0.19 16 36 H 0.05 0.67 7.66 -51.93 -0.40 0.27 16 37 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 38 H 0.08 1.26 7.82 -51.93 -0.41 0.86 16 39 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.24 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.03 0.72 8.14 -51.92 -0.42 0.30 16 43 H 0.07 1.82 6.80 -51.93 -0.35 1.46 16 LS Contribution 354.20 15.07 5.34 5.34 Total: -1.00 -36.01 354.20 -8.94 -44.95 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: -5.52 Total: -2.99 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: -1.55 Total: 6.63 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: -0.20 Total: -55.14 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -0.47 Total: -15.44 kcal Atomic # 14 Polarization: 23.98 SS G_CDS: -5.02 Total: 18.95 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.50 Total: -2.30 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.01 -8.94 -44.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951564066.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.497 kcal (2) G-P(sol) polarization free energy of solvation -36.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds