Wall clock time and date at job start Tue Mar 31 2020 20:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21276 * 119.99994 * 2 1 4 4 N 1.34777 * 120.00072 * 179.97438 * 2 1 3 5 5 C 1.38902 * 120.00161 * 180.02562 * 4 2 1 6 6 N 1.29517 * 125.26604 * 180.31264 * 5 4 2 7 7 C 1.33638 * 115.66305 * 180.19220 * 6 5 4 8 8 C 1.47205 * 122.50019 * 179.79949 * 7 6 5 9 9 O 1.21647 * 120.00014 * 179.71478 * 8 7 6 10 10 N 1.34777 * 119.99916 * 359.70759 * 8 7 6 11 11 C 1.47425 * 125.64882 * 0.04332 * 10 8 7 12 12 C 1.54909 * 104.83015 * 204.09094 * 11 10 8 13 13 C 1.55158 * 101.58373 * 322.99259 * 12 11 10 14 14 H 1.09008 * 110.86877 * 277.06540 * 13 12 11 15 15 N 1.46495 * 110.71882 * 153.86526 * 13 12 11 16 16 C 1.46499 * 120.00399 * 305.02113 * 15 13 12 17 17 C 1.36946 * 119.99853 * 125.02118 * 15 13 12 18 18 H 1.08003 * 120.00068 * 339.54456 * 17 15 13 19 19 C 1.38805 * 119.99760 * 159.26334 * 17 15 13 20 20 N 1.31618 * 120.00465 * 345.39950 * 19 17 15 21 21 Si 1.86803 * 119.99675 * 165.40088 * 19 17 15 22 22 H 1.48500 * 109.47324 * 94.72303 * 21 19 17 23 23 H 1.48510 * 109.46837 * 214.72001 * 21 19 17 24 24 H 1.48500 * 109.47379 * 334.71709 * 21 19 17 25 25 C 1.47024 * 125.64485 * 179.97438 * 10 8 7 26 26 C 1.34885 * 114.99962 * 359.52912 * 7 6 5 27 27 S 1.70989 * 109.19598 * 0.24560 * 26 7 6 28 28 H 1.09007 * 109.47227 * 270.00289 * 1 2 3 29 29 H 1.09001 * 109.47119 * 30.00031 * 1 2 3 30 30 H 1.08997 * 109.47192 * 150.00210 * 1 2 3 31 31 H 0.97007 * 119.99513 * 359.97438 * 4 2 1 32 32 H 1.08998 * 110.36516 * 322.92707 * 11 10 8 33 33 H 1.09000 * 110.36763 * 85.14110 * 11 10 8 34 34 H 1.08999 * 111.00543 * 204.91458 * 12 11 10 35 35 H 1.08998 * 111.00424 * 81.06777 * 12 11 10 36 36 H 1.08991 * 109.47126 * 264.83817 * 16 15 13 37 37 H 1.09006 * 109.46756 * 24.83767 * 16 15 13 38 38 H 1.08998 * 109.47240 * 144.83269 * 16 15 13 39 39 H 0.96996 * 120.00602 * 179.97438 * 20 19 17 40 40 H 1.09003 * 109.88173 * 59.56670 * 25 10 8 41 41 H 1.08991 * 110.01151 * 298.46789 * 25 10 8 42 42 H 1.07998 * 125.40496 * 180.21229 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5699 -1.1672 0.0011 6 7 4.3177 -2.2247 -0.0042 7 6 5.6353 -2.0018 0.0015 8 6 6.6223 -3.0940 0.0011 9 8 7.8117 -2.8390 0.0012 10 7 6.2080 -4.3765 0.0008 11 6 4.8040 -4.8260 -0.0001 12 6 4.8427 -6.2489 0.6110 13 6 6.1688 -6.8031 0.0264 14 1 6.0169 -7.1911 -0.9809 15 7 6.7277 -7.8380 0.8997 16 6 6.9792 -7.5464 2.3132 17 6 7.0151 -9.0781 0.3948 18 1 6.5465 -9.4107 -0.5197 19 6 7.9131 -9.9052 1.0551 20 7 8.6995 -9.4113 1.9879 21 14 8.0057 -11.7195 0.6199 22 1 9.0811 -11.9341 -0.3814 23 1 8.3037 -12.5073 1.8430 24 1 6.7058 -12.1594 0.0523 25 6 7.0817 -5.5591 -0.0002 26 6 5.9935 -0.7014 0.0019 27 16 4.5859 0.2694 0.0016 28 1 -0.3634 0.0001 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6958 -2.0073 0.0013 32 1 4.1938 -4.1652 0.6155 33 1 4.4169 -4.8591 -1.0186 34 1 3.9908 -6.8410 0.2769 35 1 4.8835 -6.2056 1.6994 36 1 8.0189 -7.2461 2.4428 37 1 6.3242 -6.7385 2.6396 38 1 6.7815 -8.4376 2.9088 39 1 9.3267 -9.9894 2.4496 40 1 7.7200 -5.5491 0.8833 41 1 7.6955 -5.5686 -0.9008 42 1 7.0083 -0.3319 0.0029 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971854621.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:12 Heat of formation + Delta-G solvation = 22.742559 kcal Electronic energy + Delta-G solvation = -26724.628472 eV Core-core repulsion = 22833.343316 eV Total energy + Delta-G solvation = -3891.285156 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.91725 -40.22272 -38.69589 -37.26808 -35.34808 -34.73876 -31.62467 -31.24137 -29.69006 -29.48219 -28.12281 -26.05518 -25.48805 -23.71450 -22.40088 -22.09159 -21.47590 -19.31644 -19.15082 -18.31933 -17.58343 -17.21485 -16.99864 -16.42745 -16.05846 -15.72885 -15.31074 -14.94615 -14.68345 -14.44555 -13.84639 -13.55296 -13.33399 -13.27067 -13.26006 -12.93261 -12.60813 -12.56250 -12.18243 -11.98901 -11.78984 -11.47073 -11.37093 -10.89648 -10.76376 -10.65646 -10.54734 -10.42875 -10.28518 -10.10610 -9.80298 -9.77096 -9.69554 -9.55937 -8.61859 -8.55128 -8.15418 -6.81083 -5.73970 -3.19277 0.37372 0.75395 1.53120 1.53976 2.13165 2.22919 3.34562 3.38636 3.44877 3.46819 3.51248 3.99203 4.22657 4.48707 4.55902 4.72906 4.95879 5.11679 5.16979 5.20445 5.31736 5.39131 5.44937 5.67282 5.70399 5.74604 5.95731 6.03175 6.21408 6.32427 6.40323 6.47300 6.63573 6.73907 6.86406 6.92427 7.22109 7.28516 7.37324 7.73181 7.80340 7.86318 8.35136 8.41239 9.20571 9.83800 10.32151 11.30600 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.023416 B = 0.002459 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.501497 B =11384.766459 C =12242.467573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.512 3.488 3 O -0.511 6.511 4 N -0.621 5.621 5 C 0.243 3.757 6 N -0.467 5.467 7 C 0.040 3.960 8 C 0.596 3.404 9 O -0.541 6.541 10 N -0.593 5.593 11 C 0.108 3.892 12 C -0.156 4.156 13 C 0.173 3.827 14 H 0.078 0.922 15 N -0.586 5.586 16 C 0.160 3.840 17 C -0.259 4.259 18 H 0.071 0.929 19 C 0.002 3.998 20 N -0.904 5.904 21 Si 0.906 3.094 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.086 3.914 26 C -0.262 4.262 27 S 0.265 5.735 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.090 0.910 31 H 0.427 0.573 32 H 0.091 0.909 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.031 0.969 37 H 0.002 0.998 38 H 0.044 0.956 39 H 0.253 0.747 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.066 19.886 -3.743 27.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.299 3.701 3 O -0.386 6.386 4 N -0.272 5.272 5 C -0.126 4.126 6 N -0.191 5.191 7 C -0.094 4.094 8 C 0.381 3.619 9 O -0.419 6.419 10 N -0.325 5.325 11 C -0.015 4.015 12 C -0.196 4.196 13 C 0.062 3.938 14 H 0.096 0.904 15 N -0.307 5.307 16 C 0.016 3.984 17 C -0.389 4.389 18 H 0.089 0.911 19 C -0.196 4.196 20 N -0.549 5.549 21 Si 0.736 3.264 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.205 1.205 25 C -0.038 4.038 26 C -0.405 4.405 27 S 0.516 5.484 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.108 0.892 31 H 0.266 0.734 32 H 0.110 0.890 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.049 0.951 37 H 0.021 0.979 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -18.356 21.259 -3.618 28.319 hybrid contribution 0.639 -2.265 -0.171 2.360 sum -17.717 18.994 -3.788 26.249 Atomic orbital electron populations 1.21858 0.88542 1.06088 1.05910 1.21352 0.91700 0.82113 0.74930 1.90695 1.69586 1.30683 1.47605 1.42908 1.01568 1.11564 1.71154 1.24464 0.89850 0.93835 1.04411 1.67317 1.03383 1.28376 1.20001 1.19905 0.88522 0.93608 1.07406 1.16778 0.86512 0.80841 0.77735 1.90817 1.15959 1.83180 1.51978 1.48317 1.09394 1.04658 1.70090 1.22511 0.82317 0.95792 1.00922 1.23395 1.00330 0.94282 1.01579 1.21360 0.90246 0.87239 0.94910 0.90394 1.43959 1.73323 1.08624 1.04754 1.20802 0.97247 0.96735 0.83641 1.19238 1.20050 0.90404 1.09180 0.91111 1.25012 0.96219 0.98989 0.99405 1.70096 1.23163 1.33981 1.27627 0.86227 0.77755 0.85091 0.77355 1.21488 1.21601 1.20458 1.22979 0.94478 0.84171 1.02218 1.26884 1.07686 0.97614 1.08281 1.84819 0.91294 1.05597 1.66647 0.87689 0.87718 0.89161 0.73380 0.89047 0.92110 0.90591 0.90653 0.95102 0.97932 0.93702 0.93659 0.90775 0.92066 0.79339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.26 10.30 36.01 0.37 0.11 16 2 C 0.51 3.17 7.90 -10.99 -0.09 3.08 16 3 O -0.51 -5.02 14.61 5.56 0.08 -4.94 16 4 N -0.62 -4.14 5.40 -11.91 -0.06 -4.21 16 5 C 0.24 2.57 8.36 -87.53 -0.73 1.84 16 6 N -0.47 -6.00 7.29 -10.51 -0.08 -6.08 16 7 C 0.04 0.60 6.58 -84.63 -0.56 0.04 16 8 C 0.60 11.02 7.82 -12.62 -0.10 10.92 16 9 O -0.54 -11.61 16.98 5.24 0.09 -11.52 16 10 N -0.59 -10.70 3.33 -171.86 -0.57 -11.27 16 11 C 0.11 1.61 6.01 -2.53 -0.02 1.59 16 12 C -0.16 -2.57 6.59 -24.58 -0.16 -2.74 16 13 C 0.17 3.51 3.44 -66.10 -0.23 3.28 16 14 H 0.08 1.55 7.91 -51.92 -0.41 1.14 16 15 N -0.59 -14.50 2.94 -171.39 -0.50 -15.01 16 16 C 0.16 3.96 7.74 59.85 0.46 4.42 16 17 C -0.26 -7.02 9.63 -15.06 -0.15 -7.16 16 18 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 19 C 0.00 0.07 5.07 -17.43 -0.09 -0.02 16 20 N -0.90 -26.43 10.67 55.49 0.59 -25.84 16 21 Si 0.91 21.70 29.58 -169.99 -5.03 16.68 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 C 0.09 1.76 6.51 -3.06 -0.02 1.74 16 26 C -0.26 -3.35 10.55 29.54 0.31 -3.04 16 27 S 0.26 2.79 20.29 -107.50 -2.18 0.61 16 28 H 0.10 0.05 8.14 -51.92 -0.42 -0.38 16 29 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.09 -0.04 8.14 -51.93 -0.42 -0.46 16 31 H 0.43 1.64 8.82 -40.82 -0.36 1.28 16 32 H 0.09 1.27 6.00 -51.93 -0.31 0.96 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.07 1.33 6.14 -51.93 -0.32 1.01 16 36 H 0.03 0.84 7.32 -51.93 -0.38 0.46 16 37 H 0.00 0.05 6.13 -51.93 -0.32 -0.27 16 38 H 0.04 1.18 7.23 -51.93 -0.38 0.81 16 39 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.07 1.72 7.06 -51.93 -0.37 1.35 16 41 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.19 2.26 7.99 -52.49 -0.42 1.84 16 LS Contribution 358.49 15.07 5.40 5.40 Total: -1.00 -35.03 358.49 -8.59 -43.62 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -5.34 Total: -1.51 kcal Atomic # 6 Polarization: 15.05 SS G_CDS: -0.99 Total: 14.06 kcal Atomic # 7 Polarization: -61.78 SS G_CDS: -0.62 Total: -62.41 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: 0.17 Total: -16.46 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.68 kcal Atomic # 16 Polarization: 2.79 SS G_CDS: -2.18 Total: 0.61 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.03 -8.59 -43.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971854621.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.364 kcal (2) G-P(sol) polarization free energy of solvation -35.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds