Wall clock time and date at job start Tue Mar 31 2020 21:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35929 * 117.00338 * 2 1 4 4 C 1.38403 * 119.98851 * 359.97438 * 3 2 1 5 5 C 1.39552 * 119.80508 * 179.97438 * 4 3 2 6 6 C 1.47797 * 120.10421 * 180.02562 * 5 4 3 7 7 O 1.21565 * 119.99990 * 352.60975 * 6 5 4 8 8 N 1.34780 * 120.00235 * 172.60867 * 6 5 4 9 9 C 1.47460 * 125.63182 * 186.02171 * 8 6 5 10 10 C 1.54910 * 104.81278 * 204.13926 * 9 8 6 11 11 C 1.55157 * 101.61715 * 323.04170 * 10 9 8 12 12 H 1.09003 * 110.72101 * 276.94579 * 11 10 9 13 13 N 1.46492 * 110.72231 * 153.84327 * 11 10 9 14 14 C 1.46501 * 120.00508 * 300.00379 * 13 11 10 15 15 C 1.36942 * 119.99665 * 120.00191 * 13 11 10 16 16 H 1.07995 * 120.00326 * 314.86457 * 15 13 11 17 17 C 1.38818 * 119.99809 * 134.86306 * 15 13 11 18 18 N 1.31615 * 119.99676 * 182.17630 * 17 15 13 19 19 Si 1.86800 * 119.99944 * 2.17694 * 17 15 13 20 20 H 1.48502 * 109.47265 * 85.64859 * 19 17 15 21 21 H 1.48502 * 109.46889 * 205.64445 * 19 17 15 22 22 H 1.48498 * 109.47221 * 325.64541 * 19 17 15 23 23 C 1.47026 * 125.64430 * 6.10082 * 8 6 5 24 24 C 1.39616 * 119.78956 * 0.27875 * 5 4 3 25 25 C 1.37927 * 119.97135 * 359.44058 * 24 5 4 26 26 C 1.38414 * 120.19245 * 0.56106 * 25 24 5 27 27 Cl 1.73602 * 119.89112 * 179.69450 * 26 25 24 28 28 H 1.09006 * 109.46667 * 60.00001 * 1 2 3 29 29 H 1.08994 * 109.47581 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46962 * 300.00690 * 1 2 3 31 31 H 1.07997 * 120.09747 * 0.02562 * 4 3 2 32 32 H 1.08996 * 110.34988 * 85.32191 * 9 8 6 33 33 H 1.09006 * 110.40458 * 322.98545 * 9 8 6 34 34 H 1.08998 * 111.00246 * 204.95223 * 10 9 8 35 35 H 1.09001 * 111.00702 * 81.13671 * 10 9 8 36 36 H 1.08998 * 109.47184 * 84.71242 * 14 13 11 37 37 H 1.08995 * 109.47361 * 204.71852 * 14 13 11 38 38 H 1.09008 * 109.46604 * 324.71672 * 14 13 11 39 39 H 0.97005 * 119.99955 * 179.97438 * 18 17 15 40 40 H 1.08998 * 109.88078 * 59.48996 * 23 8 6 41 41 H 1.09004 * 109.88263 * 298.32525 * 23 8 6 42 42 H 1.08001 * 120.01933 * 179.69825 * 24 5 4 43 43 H 1.07999 * 119.90340 * 180.27241 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2111 0.0000 4 6 1.2922 2.3717 -0.0005 5 6 1.9298 3.6131 0.0000 6 6 1.1312 4.8567 0.0000 7 8 -0.0757 4.8040 -0.1359 8 7 1.7409 6.0492 0.1507 9 6 1.0608 7.3497 0.2945 10 6 2.0999 8.3949 -0.1826 11 6 3.4231 7.7870 0.3531 12 1 3.5732 8.0516 1.3998 13 7 4.5609 8.2254 -0.4588 14 6 4.6042 7.9120 -1.8893 15 6 5.5842 8.9282 0.1194 16 1 5.3662 9.7408 0.7965 17 6 6.9017 8.5960 -0.1647 18 7 7.8851 9.2432 0.4238 19 14 7.2789 7.2305 -1.3824 20 1 7.2851 7.7839 -2.7605 21 1 8.6106 6.6487 -1.0767 22 1 6.2411 6.1735 -1.2780 23 6 3.1939 6.2688 0.1972 24 6 3.3245 3.6765 -0.0048 25 6 4.0672 2.5142 0.0016 26 6 3.4338 1.2835 0.0011 27 17 4.3762 -0.1745 0.0011 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 0.2136 2.3169 -0.0005 32 1 0.7966 7.5260 1.3371 33 1 0.1711 7.3849 -0.3344 34 1 1.9079 9.3695 0.2661 35 1 2.1137 8.4638 -1.2703 36 1 4.0463 8.6667 -2.4436 37 1 5.6401 7.9040 -2.2283 38 1 4.1583 6.9321 -2.0602 39 1 8.8058 9.0109 0.2255 40 1 3.6516 5.9178 -0.7276 41 1 3.6217 5.7399 1.0490 42 1 3.8218 4.6352 -0.0093 43 1 5.1460 2.5646 0.0023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972488039.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:19 Heat of formation + Delta-G solvation = 15.047871 kcal Electronic energy + Delta-G solvation = -27461.358685 eV Core-core repulsion = 23535.403406 eV Total energy + Delta-G solvation = -3925.955280 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.87932 -39.77380 -37.85415 -37.46054 -36.49373 -35.06619 -32.12363 -31.57211 -30.90250 -29.91153 -28.50091 -27.46617 -26.43265 -24.93316 -23.32074 -22.52413 -22.02612 -20.10434 -19.72695 -18.34837 -17.22632 -17.03821 -16.63349 -16.23096 -16.07986 -15.97250 -15.49628 -15.23150 -14.42390 -14.32605 -14.01130 -13.82626 -13.59048 -13.44174 -13.20483 -13.00485 -12.59519 -12.54277 -12.30409 -12.00671 -11.87049 -11.77711 -11.74584 -11.65338 -11.33517 -11.12581 -10.98661 -10.76804 -10.56770 -10.30562 -9.98889 -9.91333 -9.55313 -9.18401 -8.70659 -8.55577 -8.49219 -6.92811 -6.09427 -3.72819 0.46749 1.05089 1.92974 2.65563 2.82705 2.98901 3.18876 3.27683 3.36931 3.56014 4.26576 4.34479 4.47087 4.68915 4.78513 4.82669 4.88192 4.92632 5.00739 5.07544 5.12595 5.22145 5.23651 5.38909 5.42965 5.51657 5.61417 5.64012 5.75199 5.87934 5.96632 6.02240 6.05251 6.14544 6.19168 6.26307 6.39094 6.41700 6.51788 6.66142 6.91286 7.50290 7.96626 8.09367 8.25604 8.77306 9.51361 9.92037 11.02609 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.012059 B = 0.003860 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.288224 B = 7251.224820 C = 9209.736658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.305 6.305 3 C 0.125 3.875 4 C -0.142 4.142 5 C -0.085 4.085 6 C 0.571 3.429 7 O -0.546 6.546 8 N -0.603 5.603 9 C 0.108 3.892 10 C -0.152 4.152 11 C 0.174 3.826 12 H 0.094 0.906 13 N -0.599 5.599 14 C 0.102 3.898 15 C -0.280 4.280 16 H 0.082 0.918 17 C 0.037 3.963 18 N -0.903 5.903 19 Si 0.911 3.089 20 H -0.286 1.286 21 H -0.305 1.305 22 H -0.273 1.273 23 C 0.058 3.942 24 C -0.146 4.146 25 C -0.079 4.079 26 C -0.047 4.047 27 Cl -0.055 7.055 28 H 0.059 0.941 29 H 0.103 0.897 30 H 0.059 0.941 31 H 0.149 0.851 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.019 0.981 37 H 0.043 0.957 38 H 0.032 0.968 39 H 0.266 0.734 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.178 0.822 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.329 -14.952 -0.677 19.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.218 6.218 3 C 0.078 3.922 4 C -0.162 4.162 5 C -0.088 4.088 6 C 0.361 3.639 7 O -0.425 6.425 8 N -0.336 5.336 9 C -0.014 4.014 10 C -0.192 4.192 11 C 0.065 3.935 12 H 0.112 0.888 13 N -0.321 5.321 14 C -0.042 4.042 15 C -0.409 4.409 16 H 0.099 0.901 17 C -0.164 4.164 18 N -0.544 5.544 19 Si 0.744 3.256 20 H -0.215 1.215 21 H -0.234 1.234 22 H -0.198 1.198 23 C -0.066 4.066 24 C -0.164 4.164 25 C -0.097 4.097 26 C -0.075 4.075 27 Cl -0.026 7.026 28 H 0.078 0.922 29 H 0.122 0.878 30 H 0.077 0.923 31 H 0.166 0.834 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.038 0.962 37 H 0.061 0.939 38 H 0.050 0.950 39 H 0.076 0.924 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.194 0.806 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -12.613 -15.320 -0.738 19.858 hybrid contribution 0.287 -0.760 -0.788 1.132 sum -12.327 -16.080 -1.526 20.319 Atomic orbital electron populations 1.23152 0.77795 1.04266 1.01905 1.86156 1.21742 1.25384 1.88513 1.18475 0.90361 0.85140 0.98200 1.21238 1.00949 0.90070 1.03916 1.19763 0.93674 0.93040 1.02372 1.17808 0.86777 0.82367 0.76992 1.90745 1.14092 1.86765 1.50938 1.48370 1.08405 1.06301 1.70496 1.22293 0.96446 0.81515 1.01170 1.23353 0.95832 0.98002 1.02057 1.21576 0.87130 0.88138 0.96655 0.88786 1.43936 1.21933 1.63806 1.02412 1.21467 0.99152 0.97251 0.86295 1.18781 0.83757 1.11439 1.26932 0.90050 1.25630 0.96113 0.96943 0.97750 1.69752 0.99277 1.42475 1.42861 0.86533 0.76056 0.82698 0.80318 1.21456 1.23382 1.19817 1.23446 0.79525 1.01680 1.01920 1.22939 0.93233 1.01397 0.98810 1.21018 1.01173 0.89338 0.98217 1.20475 0.88789 0.89051 1.09199 1.98370 1.71731 1.35642 1.96860 0.92233 0.87844 0.92251 0.83362 0.91223 0.90634 0.89830 0.90726 0.96239 0.93878 0.94953 0.92406 0.89878 0.90242 0.80600 0.83495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 101.05 0.99 1.17 16 2 O -0.30 -3.44 9.94 -19.52 -0.19 -3.64 16 3 C 0.12 1.56 6.67 -39.26 -0.26 1.29 16 4 C -0.14 -1.82 8.58 -39.03 -0.33 -2.15 16 5 C -0.09 -1.20 5.87 -104.98 -0.62 -1.82 16 6 C 0.57 8.95 7.80 -12.35 -0.10 8.85 16 7 O -0.55 -9.71 16.60 5.31 0.09 -9.63 16 8 N -0.60 -8.93 3.33 -175.68 -0.58 -9.51 16 9 C 0.11 1.45 6.94 -2.51 -0.02 1.44 16 10 C -0.15 -2.18 6.65 -24.58 -0.16 -2.35 16 11 C 0.17 2.96 3.45 -66.10 -0.23 2.73 16 12 H 0.09 1.62 7.95 -51.93 -0.41 1.21 16 13 N -0.60 -12.57 2.56 -171.39 -0.44 -13.01 16 14 C 0.10 2.01 7.89 59.85 0.47 2.48 16 15 C -0.28 -7.16 9.97 -15.05 -0.15 -7.31 16 16 H 0.08 2.27 8.06 -52.49 -0.42 1.84 16 17 C 0.04 1.00 5.50 -17.43 -0.10 0.90 16 18 N -0.90 -26.07 13.97 55.49 0.78 -25.30 16 19 Si 0.91 21.00 24.56 -169.99 -4.17 16.82 16 20 H -0.29 -6.52 6.79 56.52 0.38 -6.13 16 21 H -0.31 -7.24 7.11 56.52 0.40 -6.83 16 22 H -0.27 -5.79 6.62 56.52 0.37 -5.41 16 23 C 0.06 0.88 4.46 -3.06 -0.01 0.87 16 24 C -0.15 -1.95 8.61 -39.18 -0.34 -2.29 16 25 C -0.08 -0.98 9.80 -39.63 -0.39 -1.37 16 26 C -0.05 -0.60 6.34 -39.25 -0.25 -0.85 16 27 Cl -0.05 -0.65 28.49 -51.86 -1.48 -2.13 16 28 H 0.06 0.42 7.66 -51.93 -0.40 0.03 16 29 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 31 H 0.15 1.76 5.90 -52.49 -0.31 1.45 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.08 1.01 7.98 -51.93 -0.41 0.60 16 34 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.07 1.12 7.16 -51.93 -0.37 0.75 16 36 H 0.02 0.36 7.89 -51.93 -0.41 -0.05 16 37 H 0.04 0.93 2.59 -51.93 -0.13 0.79 16 38 H 0.03 0.57 6.05 -51.92 -0.31 0.25 16 39 H 0.27 7.29 8.31 -40.82 -0.34 6.96 16 40 H 0.08 1.32 4.48 -51.93 -0.23 1.09 16 41 H 0.08 1.14 6.74 -51.93 -0.35 0.79 16 42 H 0.18 2.42 2.75 -57.75 -0.16 2.26 16 43 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 351.96 15.07 5.30 5.30 Total: -1.00 -30.06 351.96 -7.39 -37.45 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -5.20 Total: 2.03 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -1.49 Total: 1.60 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: -0.25 Total: -47.82 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: -0.11 Total: -13.26 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.17 Total: 16.82 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.48 Total: -2.13 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.06 -7.39 -37.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972488039.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.497 kcal (2) G-P(sol) polarization free energy of solvation -30.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds