Wall clock time and date at job start Tue Mar 31 2020 20:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35711 * 116.99732 * 2 1 4 4 C 1.39060 * 119.89455 * 179.97438 * 3 2 1 5 5 C 1.37654 * 120.12104 * 179.97438 * 4 3 2 6 6 C 1.39785 * 119.92408 * 0.02822 * 5 4 3 7 7 C 1.47525 * 120.09879 * 180.02562 * 6 5 4 8 8 O 1.21590 * 119.99731 * 217.59378 * 7 6 5 9 9 N 1.34774 * 120.00000 * 37.58942 * 7 6 5 10 10 C 1.47423 * 125.64630 * 5.34165 * 9 7 6 11 11 C 1.54909 * 104.83001 * 155.83267 * 10 9 7 12 12 C 1.55152 * 101.58520 * 37.00739 * 11 10 9 13 13 H 1.09004 * 110.71961 * 83.03504 * 12 11 10 14 14 N 1.46502 * 110.72349 * 206.13490 * 12 11 10 15 15 C 1.46496 * 119.99656 * 59.99890 * 14 12 11 16 16 C 1.36938 * 119.99914 * 240.27432 * 14 12 11 17 17 H 1.07994 * 119.99930 * 21.30755 * 16 14 12 18 18 C 1.38812 * 119.99505 * 201.30729 * 16 14 12 19 19 N 1.31608 * 120.00543 * 16.91495 * 18 16 14 20 20 Si 1.86806 * 119.99478 * 196.91665 * 18 16 14 21 21 H 1.48503 * 109.47111 * 60.00268 * 20 18 16 22 22 H 1.48499 * 109.47052 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47228 * 299.99692 * 20 18 16 24 24 C 1.47021 * 125.65024 * 185.29119 * 9 7 6 25 25 C 1.39859 * 119.79845 * 0.27256 * 6 5 4 26 26 Cl 1.73600 * 120.05877 * 179.72191 * 25 6 5 27 27 C 1.37897 * 119.87451 * 359.45080 * 25 6 5 28 28 H 1.09001 * 109.47176 * 59.99952 * 1 2 3 29 29 H 1.09005 * 109.47468 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47586 * 299.99489 * 1 2 3 31 31 H 1.08001 * 119.94337 * 0.02562 * 4 3 2 32 32 H 1.07996 * 120.03465 * 180.02562 * 5 4 3 33 33 H 1.08995 * 110.37446 * 36.99511 * 10 9 7 34 34 H 1.09003 * 110.36530 * 274.66597 * 10 9 7 35 35 H 1.08998 * 111.00782 * 278.93072 * 11 10 9 36 36 H 1.09008 * 111.03709 * 155.09464 * 11 10 9 37 37 H 1.08995 * 109.47254 * 93.50581 * 15 14 12 38 38 H 1.09001 * 109.46922 * 213.49911 * 15 14 12 39 39 H 1.09000 * 109.47213 * 333.49664 * 15 14 12 40 40 H 0.97001 * 120.00484 * 179.97438 * 19 18 16 41 41 H 1.09007 * 109.87719 * 61.68365 * 24 9 7 42 42 H 1.09002 * 109.88262 * 300.51918 * 24 9 7 43 43 H 1.08003 * 119.96084 * 180.27864 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.4339 1.2795 0.0005 5 6 4.0636 2.5036 0.0000 6 6 3.3053 3.6779 -0.0005 7 6 3.9762 4.9917 -0.0016 8 8 3.5098 5.9130 0.6404 9 7 5.1060 5.1708 -0.7142 10 6 5.7167 4.1807 -1.6198 11 6 6.5551 5.0192 -2.6166 12 6 7.1013 6.1427 -1.6964 13 1 7.9907 5.8063 -1.1635 14 7 7.3898 7.3525 -2.4707 15 6 6.3176 8.0201 -3.2128 16 6 8.6627 7.8560 -2.5052 17 1 9.5023 7.2178 -2.2726 18 6 8.8739 9.1867 -2.8391 19 7 7.8747 10.0423 -2.7973 20 14 10.5764 9.7631 -3.3478 21 1 11.0113 9.0167 -4.5558 22 1 10.5367 11.2160 -3.6520 23 1 11.5344 9.5147 -2.2408 24 6 5.9332 6.3863 -0.7178 25 6 1.9087 3.6034 0.0054 26 17 0.9604 5.0574 0.0121 27 6 1.2865 2.3728 0.0001 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8899 31 1 4.0196 0.3721 0.0005 32 1 5.1423 2.5565 0.0000 33 1 4.9440 3.6233 -2.1491 34 1 6.3601 3.5013 -1.0607 35 1 5.9264 5.4317 -3.4057 36 1 7.3690 4.4284 -3.0371 37 1 5.8822 8.8053 -2.5948 38 1 6.7248 8.4587 -4.1238 39 1 5.5480 7.2931 -3.4722 40 1 8.0223 10.9722 -3.0303 41 1 6.3213 6.5735 0.2834 42 1 5.3401 7.2373 -1.0530 43 1 0.2081 2.3137 0.0000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972569185.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:48 Heat of formation + Delta-G solvation = -9.381424 kcal Electronic energy + Delta-G solvation = -26945.068746 eV Core-core repulsion = 23018.054133 eV Total energy + Delta-G solvation = -3927.014614 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.77100 -39.69601 -37.92874 -37.03032 -36.42517 -34.79312 -31.88895 -31.29183 -30.71922 -29.69664 -28.01434 -27.62888 -26.04430 -24.37002 -23.06819 -22.70139 -22.14162 -19.81673 -19.16598 -18.57268 -17.37715 -17.04814 -16.66818 -16.24642 -15.93465 -15.45652 -15.24095 -14.82114 -14.48398 -14.19975 -13.89329 -13.66941 -13.44395 -13.27748 -13.09821 -12.63279 -12.46090 -12.39507 -12.19481 -12.16256 -11.78251 -11.59640 -11.39455 -11.11944 -11.00339 -10.91994 -10.77003 -10.57818 -10.47944 -10.30808 -9.90736 -9.84309 -9.61523 -9.25158 -8.62014 -8.55790 -8.26330 -6.83026 -5.77355 -3.22160 0.63051 0.80731 1.93101 2.76047 2.77692 3.15092 3.37711 3.43593 3.44258 3.48462 4.33941 4.44289 4.46414 4.51529 4.69247 4.70758 4.84718 4.98352 5.03813 5.11556 5.17819 5.26277 5.31387 5.50512 5.51676 5.67804 5.69388 5.83773 5.87273 5.89700 5.99814 6.12836 6.34576 6.37682 6.54281 6.67029 6.81801 6.83573 6.86811 7.32171 7.68732 7.77472 7.78393 8.32825 8.38358 9.17384 9.81005 10.29724 11.27812 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.024208 B = 0.002594 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.358175 B =10792.232704 C =11525.010290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.309 6.309 3 C 0.158 3.842 4 C -0.154 4.154 5 C -0.038 4.038 6 C -0.153 4.153 7 C 0.567 3.433 8 O -0.522 6.522 9 N -0.606 5.606 10 C 0.098 3.902 11 C -0.154 4.154 12 C 0.173 3.827 13 H 0.079 0.921 14 N -0.585 5.585 15 C 0.159 3.841 16 C -0.263 4.263 17 H 0.071 0.929 18 C 0.005 3.995 19 N -0.901 5.901 20 Si 0.905 3.095 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.089 3.911 25 C 0.049 3.951 26 Cl -0.036 7.036 27 C -0.212 4.212 28 H 0.059 0.941 29 H 0.104 0.896 30 H 0.059 0.941 31 H 0.143 0.857 32 H 0.149 0.851 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.030 0.970 38 H 0.045 0.955 39 H 0.002 0.998 40 H 0.255 0.745 41 H 0.061 0.939 42 H 0.075 0.925 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.616 -21.542 3.960 25.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.222 6.222 3 C 0.111 3.889 4 C -0.173 4.173 5 C -0.056 4.056 6 C -0.157 4.157 7 C 0.355 3.645 8 O -0.399 6.399 9 N -0.340 5.340 10 C -0.025 4.025 11 C -0.194 4.194 12 C 0.063 3.937 13 H 0.097 0.903 14 N -0.305 5.305 15 C 0.015 3.985 16 C -0.393 4.393 17 H 0.088 0.912 18 C -0.194 4.194 19 N -0.545 5.545 20 Si 0.735 3.265 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.209 1.209 24 C -0.035 4.035 25 C 0.021 3.979 26 Cl -0.006 7.006 27 C -0.232 4.232 28 H 0.078 0.922 29 H 0.122 0.878 30 H 0.078 0.922 31 H 0.161 0.839 32 H 0.166 0.834 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.048 0.952 38 H 0.063 0.937 39 H 0.021 0.979 40 H 0.065 0.935 41 H 0.080 0.920 42 H 0.093 0.907 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -13.930 -20.853 4.289 25.442 hybrid contribution 0.436 0.642 -0.255 0.817 sum -13.494 -20.211 4.034 24.634 Atomic orbital electron populations 1.23169 0.77795 1.04409 1.01867 1.86066 1.21918 1.26268 1.87953 1.19057 0.92213 0.83818 0.93804 1.20452 0.91172 0.98887 1.06801 1.21296 1.00618 0.89881 0.93846 1.19775 0.92010 0.94754 1.09137 1.17602 0.79801 0.87073 0.80059 1.90836 1.63641 1.42313 1.43114 1.48418 1.24005 1.17763 1.43851 1.22475 0.96544 0.91920 0.91565 1.23391 0.99386 0.98298 0.98338 1.21355 0.94221 0.88058 0.90108 0.90269 1.43922 1.07169 1.27162 1.52247 1.20771 0.88618 0.93278 0.95850 1.19157 0.83381 0.92810 1.43922 0.91171 1.25009 0.97376 0.95572 1.01478 1.70086 1.30622 1.02770 1.50989 0.86329 0.83938 0.77449 0.78773 1.21033 1.21664 1.20864 1.22885 0.93071 0.86606 1.00943 1.20667 0.90727 0.88451 0.98031 1.98427 1.71039 1.35057 1.96082 1.21022 1.00886 0.90294 1.10968 0.92193 0.87807 0.92213 0.83914 0.83396 0.91186 0.91557 0.90552 0.90323 0.95215 0.93660 0.97931 0.93533 0.92012 0.90664 0.83910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.10 16 2 O -0.31 -2.58 10.48 -18.84 -0.20 -2.78 16 3 C 0.16 1.50 6.69 -39.03 -0.26 1.24 16 4 C -0.15 -1.40 9.97 -39.49 -0.39 -1.79 16 5 C -0.04 -0.39 8.19 -39.22 -0.32 -0.71 16 6 C -0.15 -2.08 5.38 -104.93 -0.57 -2.64 16 7 C 0.57 9.67 7.19 -12.48 -0.09 9.58 16 8 O -0.52 -10.75 15.48 5.29 0.08 -10.66 16 9 N -0.61 -9.91 3.32 -171.75 -0.57 -10.48 16 10 C 0.10 1.26 5.23 -2.53 -0.01 1.25 16 11 C -0.15 -2.37 6.61 -24.58 -0.16 -2.53 16 12 C 0.17 3.34 3.44 -66.10 -0.23 3.11 16 13 H 0.08 1.49 7.94 -51.93 -0.41 1.08 16 14 N -0.58 -14.12 2.93 -171.40 -0.50 -14.62 16 15 C 0.16 3.87 7.57 59.84 0.45 4.32 16 16 C -0.26 -7.00 9.60 -15.06 -0.14 -7.14 16 17 H 0.07 1.80 7.87 -52.49 -0.41 1.38 16 18 C 0.00 0.14 5.00 -17.44 -0.09 0.05 16 19 N -0.90 -26.08 10.87 55.49 0.60 -25.48 16 20 Si 0.91 21.46 29.59 -169.99 -5.03 16.43 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 C 0.09 1.72 6.50 -3.07 -0.02 1.70 16 25 C 0.05 0.64 6.33 -39.10 -0.25 0.39 16 26 Cl -0.04 -0.51 26.72 -51.86 -1.39 -1.89 16 27 C -0.21 -2.14 8.80 -39.46 -0.35 -2.49 16 28 H 0.06 0.25 7.65 -51.93 -0.40 -0.14 16 29 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.25 7.65 -51.93 -0.40 -0.14 16 31 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 32 H 0.15 1.30 5.87 -52.49 -0.31 0.99 16 33 H 0.07 0.80 7.31 -51.93 -0.38 0.42 16 34 H 0.07 0.69 6.94 -51.93 -0.36 0.33 16 35 H 0.08 1.28 6.43 -51.93 -0.33 0.95 16 36 H 0.08 1.09 8.14 -51.92 -0.42 0.67 16 37 H 0.03 0.80 7.33 -51.93 -0.38 0.41 16 38 H 0.04 1.18 7.22 -51.93 -0.38 0.80 16 39 H 0.00 0.05 6.44 -51.93 -0.33 -0.29 16 40 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.08 1.68 6.80 -51.93 -0.35 1.33 16 43 H 0.14 1.12 6.27 -52.48 -0.33 0.79 16 LS Contribution 359.55 15.07 5.42 5.42 Total: -1.00 -32.42 359.55 -8.62 -41.04 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -5.60 Total: -2.39 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -1.44 Total: 5.42 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: -0.47 Total: -50.58 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.12 Total: -13.44 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.39 Total: -1.89 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.42 -8.62 -41.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972569185.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.658 kcal (2) G-P(sol) polarization free energy of solvation -32.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds