Wall clock time and date at job start Tue Mar 31 2020 20:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35711 * 116.99732 * 2 1 4 4 C 1.39060 * 119.89455 * 179.97438 * 3 2 1 5 5 C 1.37654 * 120.12104 * 179.97438 * 4 3 2 6 6 C 1.39785 * 119.92408 * 0.02822 * 5 4 3 7 7 C 1.47525 * 120.09879 * 180.02562 * 6 5 4 8 8 O 1.21590 * 119.99731 * 217.59378 * 7 6 5 9 9 N 1.34774 * 120.00000 * 37.58942 * 7 6 5 10 10 C 1.47423 * 125.64630 * 5.34165 * 9 7 6 11 11 C 1.54909 * 104.83001 * 155.83267 * 10 9 7 12 12 C 1.55152 * 101.58520 * 37.00739 * 11 10 9 13 13 H 1.09004 * 110.71961 * 83.03504 * 12 11 10 14 14 N 1.46502 * 110.72349 * 206.13490 * 12 11 10 15 15 C 1.46496 * 119.99656 * 59.99890 * 14 12 11 16 16 C 1.36938 * 119.99914 * 240.27432 * 14 12 11 17 17 H 1.07994 * 119.99930 * 21.30755 * 16 14 12 18 18 C 1.38812 * 119.99505 * 201.30729 * 16 14 12 19 19 N 1.31608 * 120.00543 * 16.91495 * 18 16 14 20 20 Si 1.86806 * 119.99478 * 196.91665 * 18 16 14 21 21 H 1.48503 * 109.47111 * 60.00268 * 20 18 16 22 22 H 1.48499 * 109.47052 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47228 * 299.99692 * 20 18 16 24 24 C 1.47021 * 125.65024 * 185.29119 * 9 7 6 25 25 C 1.39859 * 119.79845 * 0.27256 * 6 5 4 26 26 Cl 1.73600 * 120.05877 * 179.72191 * 25 6 5 27 27 C 1.37897 * 119.87451 * 359.45080 * 25 6 5 28 28 H 1.09001 * 109.47176 * 59.99952 * 1 2 3 29 29 H 1.09005 * 109.47468 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47586 * 299.99489 * 1 2 3 31 31 H 1.08001 * 119.94337 * 0.02562 * 4 3 2 32 32 H 1.07996 * 120.03465 * 180.02562 * 5 4 3 33 33 H 1.08995 * 110.37446 * 36.99511 * 10 9 7 34 34 H 1.09003 * 110.36530 * 274.66597 * 10 9 7 35 35 H 1.08998 * 111.00782 * 278.93072 * 11 10 9 36 36 H 1.09008 * 111.03709 * 155.09464 * 11 10 9 37 37 H 1.08995 * 109.47254 * 93.50581 * 15 14 12 38 38 H 1.09001 * 109.46922 * 213.49911 * 15 14 12 39 39 H 1.09000 * 109.47213 * 333.49664 * 15 14 12 40 40 H 0.97001 * 120.00484 * 179.97438 * 19 18 16 41 41 H 1.09007 * 109.87719 * 61.68365 * 24 9 7 42 42 H 1.09002 * 109.88262 * 300.51918 * 24 9 7 43 43 H 1.08003 * 119.96084 * 180.27864 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.4339 1.2795 0.0005 5 6 4.0636 2.5036 0.0000 6 6 3.3053 3.6779 -0.0005 7 6 3.9762 4.9917 -0.0016 8 8 3.5098 5.9130 0.6404 9 7 5.1060 5.1708 -0.7142 10 6 5.7167 4.1807 -1.6198 11 6 6.5551 5.0192 -2.6166 12 6 7.1013 6.1427 -1.6964 13 1 7.9907 5.8063 -1.1635 14 7 7.3898 7.3525 -2.4707 15 6 6.3176 8.0201 -3.2128 16 6 8.6627 7.8560 -2.5052 17 1 9.5023 7.2178 -2.2726 18 6 8.8739 9.1867 -2.8391 19 7 7.8747 10.0423 -2.7973 20 14 10.5764 9.7631 -3.3478 21 1 11.0113 9.0167 -4.5558 22 1 10.5367 11.2160 -3.6520 23 1 11.5344 9.5147 -2.2408 24 6 5.9332 6.3863 -0.7178 25 6 1.9087 3.6034 0.0054 26 17 0.9604 5.0574 0.0121 27 6 1.2865 2.3728 0.0001 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8899 31 1 4.0196 0.3721 0.0005 32 1 5.1423 2.5565 0.0000 33 1 4.9440 3.6233 -2.1491 34 1 6.3601 3.5013 -1.0607 35 1 5.9264 5.4317 -3.4057 36 1 7.3690 4.4284 -3.0371 37 1 5.8822 8.8053 -2.5948 38 1 6.7248 8.4587 -4.1238 39 1 5.5480 7.2931 -3.4722 40 1 8.0223 10.9722 -3.0303 41 1 6.3213 6.5735 0.2834 42 1 5.3401 7.2373 -1.0530 43 1 0.2081 2.3137 0.0000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972569185.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:47 Heat of formation + Delta-G solvation = -29.663728 kcal Electronic energy + Delta-G solvation = -26945.948253 eV Core-core repulsion = 23018.054133 eV Total energy + Delta-G solvation = -3927.894120 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.68928 -40.75226 -39.10575 -38.20728 -37.37817 -36.53033 -33.55646 -32.13242 -31.88466 -31.04133 -29.28544 -28.33404 -28.06518 -25.71540 -24.29686 -23.80091 -23.23989 -21.07620 -20.65500 -19.28257 -18.93846 -18.46463 -17.55695 -17.46854 -16.83346 -16.72796 -16.51516 -16.07041 -15.60579 -15.24563 -15.06902 -14.99795 -14.72353 -14.52605 -14.27178 -14.14876 -13.87711 -13.61701 -13.24687 -13.18545 -12.95593 -12.86476 -12.70645 -12.44842 -12.40349 -12.25729 -12.13973 -12.13224 -12.09782 -11.86045 -11.75043 -11.43129 -10.94836 -10.60076 -10.06910 -9.69571 -9.35949 -8.82710 -7.83786 -5.31078 -0.26227 0.03432 0.99221 1.49155 1.51678 1.58262 1.65588 1.91633 2.20559 2.50660 2.54626 3.27888 3.41957 3.56839 3.61868 3.78436 3.86237 4.03388 4.07812 4.26693 4.29887 4.31363 4.38895 4.39125 4.44621 4.54756 4.66429 4.74448 4.78143 4.87093 4.90975 4.98764 5.03128 5.09962 5.19063 5.25522 5.30600 5.39834 5.45474 5.63266 5.68004 6.20409 6.30750 6.51664 7.07518 7.12689 7.84091 8.29474 9.20300 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.024208 B = 0.002594 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.358175 B =10792.232704 C =11525.010290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.314 6.314 3 C 0.165 3.835 4 C -0.145 4.145 5 C -0.028 4.028 6 C -0.177 4.177 7 C 0.563 3.437 8 O -0.571 6.571 9 N -0.607 5.607 10 C 0.102 3.898 11 C -0.141 4.141 12 C 0.167 3.833 13 H 0.089 0.911 14 N -0.601 5.601 15 C 0.181 3.819 16 C -0.265 4.265 17 H 0.082 0.918 18 C -0.056 4.056 19 N -0.940 5.940 20 Si 0.972 3.028 21 H -0.275 1.275 22 H -0.301 1.301 23 H -0.273 1.273 24 C 0.101 3.899 25 C 0.033 3.967 26 Cl -0.062 7.062 27 C -0.209 4.209 28 H 0.067 0.933 29 H 0.127 0.873 30 H 0.066 0.934 31 H 0.174 0.826 32 H 0.168 0.832 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.060 0.940 36 H 0.105 0.895 37 H -0.007 1.007 38 H 0.020 0.980 39 H 0.027 0.973 40 H 0.247 0.753 41 H 0.048 0.952 42 H 0.034 0.966 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.014 -26.090 3.726 29.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.226 6.226 3 C 0.118 3.882 4 C -0.164 4.164 5 C -0.047 4.047 6 C -0.181 4.181 7 C 0.353 3.647 8 O -0.451 6.451 9 N -0.340 5.340 10 C -0.019 4.019 11 C -0.181 4.181 12 C 0.058 3.942 13 H 0.107 0.893 14 N -0.322 5.322 15 C 0.036 3.964 16 C -0.395 4.395 17 H 0.100 0.900 18 C -0.251 4.251 19 N -0.586 5.586 20 Si 0.800 3.200 21 H -0.201 1.201 22 H -0.227 1.227 23 H -0.199 1.199 24 C -0.025 4.025 25 C 0.005 3.995 26 Cl -0.032 7.032 27 C -0.228 4.228 28 H 0.086 0.914 29 H 0.145 0.855 30 H 0.084 0.916 31 H 0.191 0.809 32 H 0.186 0.814 33 H 0.112 0.888 34 H 0.124 0.876 35 H 0.079 0.921 36 H 0.123 0.877 37 H 0.011 0.989 38 H 0.039 0.961 39 H 0.046 0.954 40 H 0.056 0.944 41 H 0.067 0.933 42 H 0.053 0.947 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -13.326 -25.491 4.052 29.047 hybrid contribution 0.139 1.859 -0.125 1.868 sum -13.186 -23.632 3.927 27.345 Atomic orbital electron populations 1.23491 0.75969 1.06282 1.02575 1.86082 1.23797 1.25370 1.87349 1.19227 0.92658 0.83975 0.92346 1.20779 0.91230 0.99349 1.04994 1.21455 1.01349 0.89008 0.92848 1.19578 0.92287 0.93738 1.12475 1.18217 0.79381 0.88046 0.79016 1.90802 1.64861 1.44343 1.45131 1.48441 1.23825 1.17321 1.44375 1.22736 0.97245 0.91122 0.90804 1.23257 1.00109 0.97066 0.97626 1.21586 0.94588 0.87329 0.90704 0.89323 1.44121 1.06448 1.28382 1.53232 1.20398 0.89059 0.92911 0.94081 1.19598 0.84709 0.92917 1.42250 0.89982 1.25840 1.00880 0.95976 1.02412 1.70275 1.32718 1.02640 1.52989 0.85276 0.79855 0.76210 0.78698 1.20085 1.22728 1.19878 1.22455 0.93016 0.86978 1.00034 1.20837 0.90553 0.88452 0.99613 1.98415 1.71610 1.36871 1.96344 1.21177 1.02002 0.89430 1.10212 0.91441 0.85496 0.91559 0.80896 0.81428 0.88804 0.87606 0.92128 0.87690 0.98895 0.96073 0.95437 0.94355 0.93331 0.94745 0.82102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.81 113.37 1.11 1.18 16 2 O -0.31 -3.99 10.48 -90.32 -0.95 -4.93 16 3 C 0.17 2.54 6.69 22.63 0.15 2.69 16 4 C -0.15 -1.98 9.97 22.33 0.22 -1.76 16 5 C -0.03 -0.48 8.19 22.51 0.18 -0.30 16 6 C -0.18 -4.54 5.38 -20.06 -0.11 -4.65 16 7 C 0.56 19.24 7.19 86.69 0.62 19.87 16 8 O -0.57 -24.59 15.48 -4.00 -0.06 -24.65 16 9 N -0.61 -19.36 3.32 -815.56 -2.71 -22.07 16 10 C 0.10 2.27 5.23 86.86 0.45 2.72 16 11 C -0.14 -3.97 6.61 31.98 0.21 -3.75 16 12 C 0.17 6.30 3.44 46.18 0.16 6.46 16 13 H 0.09 3.19 7.94 -2.38 -0.02 3.17 16 14 N -0.60 -29.41 2.93 -696.18 -2.04 -31.45 16 15 C 0.18 9.15 7.57 127.77 0.97 10.12 16 16 C -0.26 -14.11 9.60 84.03 0.81 -13.30 16 17 H 0.08 4.10 7.87 -2.91 -0.02 4.08 16 18 C -0.06 -3.12 5.00 84.86 0.42 -2.70 16 19 N -0.94 -56.71 10.87 21.65 0.24 -56.48 16 20 Si 0.97 44.65 29.59 68.60 2.03 46.68 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 22 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 23 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 24 C 0.10 3.98 6.50 86.73 0.56 4.54 16 25 C 0.03 0.83 6.33 22.58 0.14 0.97 16 26 Cl -0.06 -1.80 26.72 -2.72 -0.07 -1.87 16 27 C -0.21 -3.74 8.80 22.35 0.20 -3.54 16 28 H 0.07 0.35 7.65 -2.39 -0.02 0.33 16 29 H 0.13 0.22 8.14 -2.38 -0.02 0.20 16 30 H 0.07 0.35 7.65 -2.39 -0.02 0.34 16 31 H 0.17 1.35 8.06 -2.91 -0.02 1.33 16 32 H 0.17 2.12 5.87 -2.91 -0.02 2.10 16 33 H 0.09 1.73 7.31 -2.39 -0.02 1.71 16 34 H 0.11 1.60 6.94 -2.39 -0.02 1.59 16 35 H 0.06 1.92 6.43 -2.39 -0.02 1.90 16 36 H 0.10 2.46 8.14 -2.38 -0.02 2.44 16 37 H -0.01 -0.42 7.33 -2.39 -0.02 -0.44 16 38 H 0.02 1.13 7.22 -2.39 -0.02 1.11 16 39 H 0.03 1.22 6.44 -2.39 -0.02 1.20 16 40 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 41 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 42 H 0.03 1.64 6.80 -2.39 -0.02 1.62 16 43 H 0.16 2.16 6.27 -2.91 -0.02 2.14 16 Total: -1.00 -75.34 359.55 3.58 -71.76 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: 1.04 Total: 4.46 kcal Atomic # 6 Polarization: 12.45 SS G_CDS: 6.11 Total: 18.56 kcal Atomic # 7 Polarization: -105.48 SS G_CDS: -4.52 Total: -110.00 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -1.01 Total: -29.58 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Atomic # 17 Polarization: -1.80 SS G_CDS: -0.07 Total: -1.87 kcal Total: -75.34 3.58 -71.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972569185.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.101 kcal (2) G-P(sol) polarization free energy of solvation -75.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds