Wall clock time and date at job start Tue Mar 31 2020 20:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35903 * 117.00132 * 2 1 4 4 C 1.38828 * 119.97590 * 359.97438 * 3 2 1 5 5 C 1.38358 * 120.22419 * 180.02562 * 4 3 2 6 6 Cl 1.73608 * 119.90782 * 180.02562 * 5 4 3 7 7 C 1.38131 * 120.18259 * 359.71588 * 5 4 3 8 8 C 1.39546 * 119.94481 * 0.58131 * 7 5 4 9 9 C 1.47861 * 120.10870 * 179.70055 * 8 7 5 10 10 O 1.21557 * 120.00290 * 187.93052 * 9 8 7 11 11 N 1.34780 * 120.00106 * 7.92988 * 9 8 7 12 12 C 1.47018 * 125.64844 * 354.87666 * 11 9 8 13 13 C 1.54325 * 107.27135 * 178.91817 * 12 11 9 14 14 C 1.55158 * 102.94270 * 337.80659 * 13 12 11 15 15 H 1.08997 * 111.00030 * 277.38720 * 14 13 12 16 16 N 1.46494 * 111.00146 * 153.57642 * 14 13 12 17 17 C 1.46498 * 120.00313 * 299.99739 * 16 14 13 18 18 C 1.36939 * 119.99968 * 120.00281 * 16 14 13 19 19 H 1.08001 * 119.99826 * 334.69157 * 18 16 14 20 20 C 1.38815 * 120.00040 * 154.41998 * 18 16 14 21 21 N 1.31611 * 120.00065 * 354.52050 * 20 18 16 22 22 Si 1.86803 * 119.99681 * 174.51737 * 20 18 16 23 23 H 1.48500 * 109.46717 * 90.00216 * 22 20 18 24 24 H 1.48503 * 109.47004 * 209.99729 * 22 20 18 25 25 H 1.48498 * 109.47459 * 329.99915 * 22 20 18 26 26 C 1.47425 * 125.64600 * 174.84787 * 11 9 8 27 27 C 1.38460 * 119.97779 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.46600 * 60.00606 * 1 2 3 29 29 H 1.09000 * 109.46898 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47054 * 300.00058 * 1 2 3 31 31 H 1.07995 * 119.88918 * 359.97438 * 4 3 2 32 32 H 1.07994 * 120.02559 * 180.30528 * 7 5 4 33 33 H 1.09004 * 109.88492 * 59.49883 * 12 11 9 34 34 H 1.09003 * 110.01210 * 298.40657 * 12 11 9 35 35 H 1.09000 * 110.72073 * 219.44010 * 13 12 11 36 36 H 1.08997 * 110.86975 * 96.24068 * 13 12 11 37 37 H 1.09006 * 109.47354 * 274.60600 * 17 16 14 38 38 H 1.09001 * 109.47321 * 34.60695 * 17 16 14 39 39 H 1.08996 * 109.47749 * 154.60828 * 17 16 14 40 40 H 0.97005 * 120.00204 * 180.02562 * 21 20 18 41 41 H 1.09006 * 110.36846 * 85.31641 * 26 11 9 42 42 H 1.08990 * 110.37056 * 322.99132 * 26 11 9 43 43 H 1.08002 * 120.09200 * 359.97394 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2895 2.3749 -0.0005 5 6 1.9123 3.6104 -0.0011 6 17 0.9582 5.0607 -0.0011 7 6 3.2912 3.6930 0.0048 8 6 4.0589 2.5277 -0.0009 9 6 5.5351 2.6120 -0.0013 10 8 6.2013 1.6064 -0.1515 11 7 6.1421 3.8038 0.1649 12 6 5.4647 5.1059 0.2500 13 6 6.5551 6.1763 0.4665 14 6 7.7335 5.3576 1.0569 15 1 7.6082 5.2106 2.1296 16 7 9.0174 5.9994 0.7641 17 6 9.4289 6.2143 -0.6253 18 6 9.8330 6.3983 1.7893 19 1 9.4113 6.6279 2.7567 20 6 11.2023 6.5020 1.5866 21 7 11.7298 6.1148 0.4447 22 14 12.2964 7.1913 2.9347 23 1 12.7606 6.0848 3.8096 24 1 13.4703 7.8648 2.3235 25 1 11.5281 8.1722 3.7427 26 6 7.5952 4.0176 0.2920 27 6 3.4288 1.2828 0.0005 28 1 -0.3632 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2112 2.3159 -0.0014 32 1 3.7746 4.6587 0.0094 33 1 4.7706 5.1085 1.0905 34 1 4.9261 5.3074 -0.6760 35 1 6.2177 6.9327 1.1751 36 1 6.8409 6.6363 -0.4794 37 1 9.9177 5.3160 -1.0027 38 1 8.5519 6.4338 -1.2343 39 1 10.1235 7.0530 -0.6731 40 1 12.6867 6.1869 0.3032 41 1 8.0551 4.0941 -0.6933 42 1 8.0495 3.2070 0.8616 43 1 4.0181 0.3777 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972592737.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:56 Heat of formation + Delta-G solvation = 6.593620 kcal Electronic energy + Delta-G solvation = -26771.076387 eV Core-core repulsion = 22844.754504 eV Total energy + Delta-G solvation = -3926.321884 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.87727 -39.76363 -37.87770 -37.45207 -36.47012 -34.95887 -32.04286 -31.27309 -30.72031 -29.88639 -27.97183 -27.64120 -26.09308 -24.77848 -23.15430 -22.74251 -22.03329 -20.10983 -19.36582 -18.30553 -17.15063 -17.04491 -16.68219 -16.20747 -15.94621 -15.65114 -15.45434 -14.86098 -14.71217 -14.14395 -14.11365 -13.56384 -13.50573 -13.43968 -12.99819 -12.69259 -12.59400 -12.42702 -12.29802 -12.25157 -11.95822 -11.58369 -11.41334 -11.12527 -11.10296 -10.90918 -10.75372 -10.47528 -10.43706 -10.32019 -9.94389 -9.89527 -9.82442 -9.26981 -8.65710 -8.60288 -8.40131 -6.81205 -5.81573 -3.30234 0.45049 0.88731 1.71001 2.66216 2.71555 3.17512 3.35197 3.41570 3.42618 3.53663 4.23626 4.42320 4.47036 4.60508 4.69717 4.73027 4.85488 4.89537 4.94800 5.05316 5.14833 5.19653 5.29248 5.35968 5.57804 5.67490 5.70414 5.74667 5.84869 5.91579 5.97895 6.08282 6.26307 6.32294 6.45843 6.58311 6.80113 6.83957 6.89426 7.35022 7.64626 7.67329 7.76114 8.21723 8.35148 9.16185 9.76544 10.26232 11.24087 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.020452 B = 0.002525 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.762035 B =11088.159792 C =11917.625299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.309 6.309 3 C 0.132 3.868 4 C -0.184 4.184 5 C -0.004 4.004 6 Cl -0.062 7.062 7 C -0.153 4.153 8 C -0.071 4.071 9 C 0.568 3.432 10 O -0.533 6.533 11 N -0.603 5.603 12 C 0.090 3.910 13 C -0.157 4.157 14 C 0.172 3.828 15 H 0.079 0.921 16 N -0.584 5.584 17 C 0.158 3.842 18 C -0.261 4.261 19 H 0.070 0.930 20 C 0.006 3.994 21 N -0.905 5.905 22 Si 0.909 3.091 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.088 3.912 27 C -0.090 4.090 28 H 0.057 0.943 29 H 0.103 0.897 30 H 0.058 0.942 31 H 0.141 0.859 32 H 0.176 0.824 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.018 0.982 38 H -0.005 1.005 39 H 0.065 0.935 40 H 0.255 0.745 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.875 -5.392 -2.010 25.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.222 6.222 3 C 0.086 3.914 4 C -0.203 4.203 5 C -0.030 4.030 6 Cl -0.033 7.033 7 C -0.171 4.171 8 C -0.075 4.075 9 C 0.357 3.643 10 O -0.412 6.412 11 N -0.335 5.335 12 C -0.033 4.033 13 C -0.197 4.197 14 C 0.061 3.939 15 H 0.097 0.903 16 N -0.304 5.304 17 C 0.014 3.986 18 C -0.390 4.390 19 H 0.088 0.912 20 C -0.193 4.193 21 N -0.550 5.550 22 Si 0.738 3.262 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.204 1.204 26 C -0.036 4.036 27 C -0.110 4.110 28 H 0.076 0.924 29 H 0.122 0.878 30 H 0.076 0.924 31 H 0.159 0.841 32 H 0.193 0.807 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.036 0.964 38 H 0.014 0.986 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -24.306 -6.018 -2.163 25.133 hybrid contribution 0.143 0.517 0.587 0.795 sum -24.163 -5.501 -1.576 24.831 Atomic orbital electron populations 1.23139 0.77985 1.04394 1.01559 1.86139 1.21657 1.25851 1.88591 1.18625 0.91753 0.84090 0.96921 1.21240 1.00836 0.90707 1.07555 1.20509 0.91708 0.87445 1.03374 1.98387 1.71829 1.36227 1.96823 1.22687 0.91976 1.01606 1.00867 1.19653 0.93444 0.92636 1.01729 1.17675 0.86363 0.82543 0.77755 1.90798 1.65771 1.34622 1.49967 1.48374 1.09526 1.05397 1.70251 1.22532 0.96454 0.83688 1.00584 1.23288 0.96131 0.97222 1.03045 1.21481 0.86696 0.88430 0.97244 0.90259 1.43837 1.16933 1.66300 1.03344 1.20860 0.94365 1.00590 0.82778 1.19222 0.87711 1.39518 0.92566 0.91233 1.25155 0.96918 0.99963 0.97274 1.70045 1.11241 1.50153 1.23515 0.86201 0.80199 0.78595 0.81175 1.21289 1.21573 1.20433 1.23143 0.77723 1.00756 1.01980 1.20583 0.91239 0.98602 1.00530 0.92391 0.87825 0.92383 0.84131 0.80716 0.90703 0.90952 0.90294 0.90194 0.96362 0.98623 0.91603 0.93505 0.90950 0.90616 0.83169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 101.05 0.99 1.12 16 2 O -0.31 -3.01 10.49 -19.43 -0.20 -3.21 16 3 C 0.13 1.41 6.68 -39.28 -0.26 1.15 16 4 C -0.18 -1.72 8.81 -39.32 -0.35 -2.06 16 5 C 0.00 -0.04 6.31 -39.58 -0.25 -0.29 16 6 Cl -0.06 -0.55 28.95 -51.86 -1.50 -2.06 16 7 C -0.15 -1.73 8.37 -39.13 -0.33 -2.06 16 8 C -0.07 -0.95 5.87 -104.99 -0.62 -1.57 16 9 C 0.57 9.45 7.81 -12.32 -0.10 9.35 16 10 O -0.53 -10.68 16.67 5.32 0.09 -10.60 16 11 N -0.60 -9.66 3.33 -175.30 -0.58 -10.24 16 12 C 0.09 1.15 4.87 -3.07 -0.01 1.14 16 13 C -0.16 -2.35 6.53 -24.90 -0.16 -2.51 16 14 C 0.17 3.30 3.55 -65.78 -0.23 3.07 16 15 H 0.08 1.53 7.96 -51.93 -0.41 1.12 16 16 N -0.58 -13.85 2.96 -171.03 -0.51 -14.36 16 17 C 0.16 3.73 7.71 59.85 0.46 4.19 16 18 C -0.26 -6.85 9.61 -15.06 -0.14 -6.99 16 19 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 20 C 0.01 0.15 5.19 -17.43 -0.09 0.06 16 21 N -0.91 -25.66 10.53 55.49 0.58 -25.08 16 22 Si 0.91 21.26 29.56 -169.99 -5.02 16.24 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 C 0.09 1.66 6.44 -2.53 -0.02 1.64 16 27 C -0.09 -1.14 9.53 -39.02 -0.37 -1.51 16 28 H 0.06 0.25 7.66 -51.93 -0.40 -0.14 16 29 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 31 H 0.14 0.97 6.28 -52.49 -0.33 0.64 16 32 H 0.18 1.82 2.76 -57.26 -0.16 1.66 16 33 H 0.08 0.82 6.68 -51.93 -0.35 0.48 16 34 H 0.07 0.80 6.79 -51.93 -0.35 0.44 16 35 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.08 1.25 6.36 -51.93 -0.33 0.92 16 37 H 0.02 0.46 7.64 -51.93 -0.40 0.06 16 38 H 0.00 -0.09 6.39 -51.93 -0.33 -0.42 16 39 H 0.07 1.70 6.63 -51.93 -0.34 1.36 16 40 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.07 1.47 6.89 -51.93 -0.36 1.11 16 42 H 0.08 1.56 8.09 -51.93 -0.42 1.14 16 43 H 0.15 1.97 7.67 -52.49 -0.40 1.57 16 LS Contribution 358.77 15.07 5.41 5.41 Total: -1.00 -30.89 358.77 -8.59 -39.48 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -5.37 Total: -0.31 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -1.48 Total: 4.73 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: -0.50 Total: -49.68 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -0.12 Total: -13.81 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.50 Total: -2.06 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.89 -8.59 -39.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972592737.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.071 kcal (2) G-P(sol) polarization free energy of solvation -30.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds