Wall clock time and date at job start Tue Mar 31 2020 20:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35903 * 117.00132 * 2 1 4 4 C 1.38828 * 119.97590 * 359.97438 * 3 2 1 5 5 C 1.38358 * 120.22419 * 180.02562 * 4 3 2 6 6 Cl 1.73608 * 119.90782 * 180.02562 * 5 4 3 7 7 C 1.38131 * 120.18259 * 359.71588 * 5 4 3 8 8 C 1.39546 * 119.94481 * 0.58131 * 7 5 4 9 9 C 1.47861 * 120.10870 * 179.70055 * 8 7 5 10 10 O 1.21557 * 120.00290 * 187.93052 * 9 8 7 11 11 N 1.34780 * 120.00106 * 7.92988 * 9 8 7 12 12 C 1.47018 * 125.64844 * 354.87666 * 11 9 8 13 13 C 1.54325 * 107.27135 * 178.91817 * 12 11 9 14 14 C 1.55158 * 102.94270 * 337.80659 * 13 12 11 15 15 H 1.08997 * 111.00030 * 277.38720 * 14 13 12 16 16 N 1.46494 * 111.00146 * 153.57642 * 14 13 12 17 17 C 1.46498 * 120.00313 * 299.99739 * 16 14 13 18 18 C 1.36939 * 119.99968 * 120.00281 * 16 14 13 19 19 H 1.08001 * 119.99826 * 334.69157 * 18 16 14 20 20 C 1.38815 * 120.00040 * 154.41998 * 18 16 14 21 21 N 1.31611 * 120.00065 * 354.52050 * 20 18 16 22 22 Si 1.86803 * 119.99681 * 174.51737 * 20 18 16 23 23 H 1.48500 * 109.46717 * 90.00216 * 22 20 18 24 24 H 1.48503 * 109.47004 * 209.99729 * 22 20 18 25 25 H 1.48498 * 109.47459 * 329.99915 * 22 20 18 26 26 C 1.47425 * 125.64600 * 174.84787 * 11 9 8 27 27 C 1.38460 * 119.97779 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.46600 * 60.00606 * 1 2 3 29 29 H 1.09000 * 109.46898 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47054 * 300.00058 * 1 2 3 31 31 H 1.07995 * 119.88918 * 359.97438 * 4 3 2 32 32 H 1.07994 * 120.02559 * 180.30528 * 7 5 4 33 33 H 1.09004 * 109.88492 * 59.49883 * 12 11 9 34 34 H 1.09003 * 110.01210 * 298.40657 * 12 11 9 35 35 H 1.09000 * 110.72073 * 219.44010 * 13 12 11 36 36 H 1.08997 * 110.86975 * 96.24068 * 13 12 11 37 37 H 1.09006 * 109.47354 * 274.60600 * 17 16 14 38 38 H 1.09001 * 109.47321 * 34.60695 * 17 16 14 39 39 H 1.08996 * 109.47749 * 154.60828 * 17 16 14 40 40 H 0.97005 * 120.00204 * 180.02562 * 21 20 18 41 41 H 1.09006 * 110.36846 * 85.31641 * 26 11 9 42 42 H 1.08990 * 110.37056 * 322.99132 * 26 11 9 43 43 H 1.08002 * 120.09200 * 359.97394 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2895 2.3749 -0.0005 5 6 1.9123 3.6104 -0.0011 6 17 0.9582 5.0607 -0.0011 7 6 3.2912 3.6930 0.0048 8 6 4.0589 2.5277 -0.0009 9 6 5.5351 2.6120 -0.0013 10 8 6.2013 1.6064 -0.1515 11 7 6.1421 3.8038 0.1649 12 6 5.4647 5.1059 0.2500 13 6 6.5551 6.1763 0.4665 14 6 7.7335 5.3576 1.0569 15 1 7.6082 5.2106 2.1296 16 7 9.0174 5.9994 0.7641 17 6 9.4289 6.2143 -0.6253 18 6 9.8330 6.3983 1.7893 19 1 9.4113 6.6279 2.7567 20 6 11.2023 6.5020 1.5866 21 7 11.7298 6.1148 0.4447 22 14 12.2964 7.1913 2.9347 23 1 12.7606 6.0848 3.8096 24 1 13.4703 7.8648 2.3235 25 1 11.5281 8.1722 3.7427 26 6 7.5952 4.0176 0.2920 27 6 3.4288 1.2828 0.0005 28 1 -0.3632 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2112 2.3159 -0.0014 32 1 3.7746 4.6587 0.0094 33 1 4.7706 5.1085 1.0905 34 1 4.9261 5.3074 -0.6760 35 1 6.2177 6.9327 1.1751 36 1 6.8409 6.6363 -0.4794 37 1 9.9177 5.3160 -1.0027 38 1 8.5519 6.4338 -1.2343 39 1 10.1235 7.0530 -0.6731 40 1 12.6867 6.1869 0.3032 41 1 8.0551 4.0941 -0.6933 42 1 8.0495 3.2070 0.8616 43 1 4.0181 0.3777 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972592737.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:55 Heat of formation + Delta-G solvation = -12.019166 kcal Electronic energy + Delta-G solvation = -26771.883498 eV Core-core repulsion = 22844.754504 eV Total energy + Delta-G solvation = -3927.128995 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.89448 -40.78986 -39.06038 -38.52675 -37.29000 -36.67245 -33.66688 -32.29741 -31.73911 -31.30124 -29.29121 -28.27270 -28.05892 -26.06285 -24.53534 -23.89135 -23.09887 -21.21861 -20.94219 -19.28614 -18.94476 -18.08712 -17.54366 -17.48537 -16.82860 -16.69897 -16.66421 -16.37663 -15.78498 -15.58350 -15.11275 -14.88250 -14.76424 -14.50372 -14.36748 -14.14767 -13.98318 -13.69512 -13.42594 -13.27572 -12.85800 -12.84473 -12.77323 -12.37705 -12.30314 -12.26091 -12.12952 -12.05639 -11.98735 -11.85975 -11.68564 -11.40137 -11.17205 -10.61182 -10.15255 -9.76597 -9.43657 -8.75229 -7.85178 -5.35538 -0.47611 0.04711 0.93345 1.48601 1.49709 1.57171 1.58881 1.70187 2.26836 2.51295 2.53116 3.21632 3.31129 3.48830 3.73583 3.83832 3.85579 3.91955 3.99620 4.13515 4.16144 4.26135 4.29620 4.38839 4.39992 4.42841 4.56036 4.74736 4.79575 4.82895 4.87314 4.92581 4.98685 5.00170 5.12747 5.22400 5.27696 5.32494 5.45937 5.63885 5.74922 6.21339 6.34480 6.38620 6.91999 7.14783 7.83791 8.28831 9.19203 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.020452 B = 0.002525 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.762035 B =11088.159792 C =11917.625299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.327 6.327 3 C 0.135 3.865 4 C -0.168 4.168 5 C -0.003 4.003 6 Cl -0.044 7.044 7 C -0.148 4.148 8 C -0.084 4.084 9 C 0.565 3.435 10 O -0.581 6.581 11 N -0.602 5.602 12 C 0.091 3.909 13 C -0.141 4.141 14 C 0.166 3.834 15 H 0.077 0.923 16 N -0.600 5.600 17 C 0.176 3.824 18 C -0.264 4.264 19 H 0.077 0.923 20 C -0.052 4.052 21 N -0.939 5.939 22 Si 0.972 3.028 23 H -0.289 1.289 24 H -0.295 1.295 25 H -0.265 1.265 26 C 0.098 3.902 27 C -0.107 4.107 28 H 0.072 0.928 29 H 0.122 0.878 30 H 0.072 0.928 31 H 0.171 0.829 32 H 0.186 0.814 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.076 0.924 37 H -0.013 1.013 38 H 0.029 0.971 39 H 0.038 0.962 40 H 0.248 0.752 41 H 0.054 0.946 42 H 0.047 0.953 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.881 -4.109 -1.341 29.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.241 6.241 3 C 0.089 3.911 4 C -0.187 4.187 5 C -0.030 4.030 6 Cl -0.015 7.015 7 C -0.166 4.166 8 C -0.088 4.088 9 C 0.356 3.644 10 O -0.463 6.463 11 N -0.334 5.334 12 C -0.030 4.030 13 C -0.181 4.181 14 C 0.056 3.944 15 H 0.095 0.905 16 N -0.322 5.322 17 C 0.031 3.969 18 C -0.394 4.394 19 H 0.095 0.905 20 C -0.247 4.247 21 N -0.586 5.586 22 Si 0.800 3.200 23 H -0.216 1.216 24 H -0.222 1.222 25 H -0.189 1.189 26 C -0.027 4.027 27 C -0.127 4.127 28 H 0.090 0.910 29 H 0.140 0.860 30 H 0.090 0.910 31 H 0.188 0.812 32 H 0.203 0.797 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.095 0.905 37 H 0.006 0.994 38 H 0.047 0.953 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -28.389 -4.714 -1.478 28.816 hybrid contribution 1.192 0.040 0.375 1.250 sum -27.197 -4.674 -1.103 27.618 Atomic orbital electron populations 1.23505 0.75569 1.06222 1.02882 1.86134 1.24155 1.25469 1.88314 1.18563 0.91045 0.85130 0.96343 1.21529 1.02230 0.89726 1.05238 1.20554 0.91427 0.88394 1.02636 1.98402 1.71182 1.35200 1.96687 1.22662 0.92493 1.00926 1.00511 1.19284 0.91181 0.93898 1.04387 1.18232 0.87804 0.81819 0.76584 1.90764 1.67139 1.36213 1.52158 1.48362 1.08267 1.06752 1.69989 1.22811 0.95947 0.80929 1.03330 1.23149 0.94382 0.97592 1.02973 1.21633 0.86263 0.88980 0.97476 0.90458 1.44006 1.18176 1.67181 1.02790 1.20549 0.94834 0.98000 0.83513 1.19600 0.88196 1.38339 0.93254 0.90514 1.25924 0.98396 1.01134 0.99288 1.70225 1.10919 1.52059 1.25353 0.85202 0.78258 0.77897 0.78649 1.21589 1.22166 1.18911 1.22735 0.79781 0.99802 1.00398 1.20533 0.92472 0.97875 1.01835 0.90981 0.86017 0.90974 0.81154 0.79728 0.87828 0.88046 0.88028 0.90527 0.99426 0.95288 0.94329 0.94228 0.92794 0.93486 0.84928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.81 113.37 1.11 1.20 16 2 O -0.33 -5.77 10.49 -92.46 -0.97 -6.74 16 3 C 0.14 2.66 6.68 22.46 0.15 2.81 16 4 C -0.17 -2.55 8.81 22.44 0.20 -2.35 16 5 C 0.00 -0.05 6.31 22.27 0.14 0.09 16 6 Cl -0.04 -0.61 28.95 -2.72 -0.08 -0.69 16 7 C -0.15 -2.92 8.37 22.56 0.19 -2.74 16 8 C -0.08 -2.19 5.87 -20.10 -0.12 -2.31 16 9 C 0.57 19.11 7.81 86.79 0.68 19.79 16 10 O -0.58 -24.63 16.67 -3.89 -0.06 -24.69 16 11 N -0.60 -19.08 3.33 -826.79 -2.75 -21.83 16 12 C 0.09 2.05 4.87 86.73 0.42 2.47 16 13 C -0.14 -3.87 6.53 31.78 0.21 -3.66 16 14 C 0.17 6.30 3.55 46.39 0.16 6.46 16 15 H 0.08 2.96 7.96 -2.39 -0.02 2.94 16 16 N -0.60 -28.81 2.96 -695.02 -2.06 -30.86 16 17 C 0.18 8.49 7.71 127.77 0.98 9.47 16 18 C -0.26 -13.96 9.61 84.03 0.81 -13.15 16 19 H 0.08 3.87 7.83 -2.91 -0.02 3.85 16 20 C -0.05 -2.88 5.19 84.86 0.44 -2.44 16 21 N -0.94 -55.18 10.53 21.65 0.23 -54.95 16 22 Si 0.97 44.33 29.56 68.60 2.03 46.36 16 23 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 24 H -0.30 -13.60 7.11 99.48 0.71 -12.90 16 25 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 26 C 0.10 3.82 6.44 86.86 0.56 4.38 16 27 C -0.11 -2.71 9.53 22.63 0.22 -2.50 16 28 H 0.07 0.36 7.66 -2.39 -0.02 0.34 16 29 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.07 0.36 7.66 -2.39 -0.02 0.34 16 31 H 0.17 1.52 6.28 -2.91 -0.02 1.51 16 32 H 0.19 3.12 2.76 -7.39 -0.02 3.10 16 33 H 0.10 1.84 6.68 -2.38 -0.02 1.82 16 34 H 0.10 1.80 6.79 -2.39 -0.02 1.79 16 35 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.08 2.18 6.36 -2.39 -0.02 2.17 16 37 H -0.01 -0.68 7.64 -2.38 -0.02 -0.70 16 38 H 0.03 1.18 6.39 -2.39 -0.02 1.16 16 39 H 0.04 2.05 6.63 -2.39 -0.02 2.03 16 40 H 0.25 14.25 8.31 -92.70 -0.77 13.48 16 41 H 0.05 2.29 6.89 -2.38 -0.02 2.28 16 42 H 0.05 2.06 8.09 -2.39 -0.02 2.05 16 43 H 0.13 3.72 7.67 -2.91 -0.02 3.70 16 Total: -1.00 -70.70 358.77 3.53 -67.18 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: 1.04 Total: 8.69 kcal Atomic # 6 Polarization: 11.38 SS G_CDS: 6.15 Total: 17.53 kcal Atomic # 7 Polarization: -103.06 SS G_CDS: -4.58 Total: -107.64 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -1.04 Total: -31.43 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -0.08 Total: -0.69 kcal Total: -70.70 3.53 -67.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972592737.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.159 kcal (2) G-P(sol) polarization free energy of solvation -70.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds