Wall clock time and date at job start Tue Mar 31 2020 21:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36940 * 119.99986 * 2 1 4 4 H 1.08001 * 120.00153 * 149.91983 * 3 2 1 5 5 C 1.38819 * 119.99777 * 329.92213 * 3 2 1 6 6 N 1.31614 * 119.99866 * 151.70487 * 5 3 2 7 7 Si 1.86800 * 119.99876 * 331.70775 * 5 3 2 8 8 H 1.48493 * 109.47271 * 95.38480 * 7 5 3 9 9 H 1.48507 * 109.46818 * 215.38642 * 7 5 3 10 10 H 1.48504 * 109.47048 * 335.37952 * 7 5 3 11 11 C 1.46503 * 120.00326 * 179.97438 * 2 1 3 12 12 H 1.08992 * 110.64012 * 178.31302 * 11 2 1 13 13 C 1.55158 * 110.86837 * 55.06163 * 11 2 1 14 14 C 1.55129 * 101.48071 * 205.89974 * 13 11 2 15 15 N 1.47425 * 104.72694 * 37.29834 * 14 13 11 16 16 C 1.34776 * 125.65190 * 155.81309 * 15 14 13 17 17 O 1.21279 * 119.99908 * 179.69418 * 16 15 14 18 18 C 1.50703 * 119.99748 * 359.69654 * 16 15 14 19 19 O 1.42902 * 109.47067 * 179.97438 * 18 16 15 20 20 C 1.35919 * 117.00217 * 179.97438 * 19 18 16 21 21 C 1.38723 * 120.03779 * 359.72244 * 20 19 18 22 22 C 1.38148 * 119.95088 * 179.79020 * 21 20 19 23 23 C 1.38360 * 120.04432 * 0.46439 * 22 21 20 24 24 Cl 1.73599 * 119.95895 * 179.77028 * 23 22 21 25 25 C 1.38368 * 120.08441 * 359.78545 * 23 22 21 26 26 C 1.38139 * 120.04228 * 359.97438 * 25 23 22 27 27 C 1.47026 * 108.69964 * 335.55041 * 15 14 13 28 28 H 1.09005 * 109.47101 * 275.26337 * 1 2 3 29 29 H 1.08996 * 109.47168 * 35.26273 * 1 2 3 30 30 H 1.08999 * 109.47285 * 155.26972 * 1 2 3 31 31 H 0.97004 * 119.99766 * 179.97438 * 6 5 3 32 32 H 1.09001 * 111.00356 * 324.13535 * 13 11 2 33 33 H 1.08999 * 111.00199 * 87.95524 * 13 11 2 34 34 H 1.08995 * 110.49856 * 278.45208 * 14 13 11 35 35 H 1.09006 * 110.34293 * 156.06121 * 14 13 11 36 36 H 1.08996 * 109.47372 * 59.99728 * 18 16 15 37 37 H 1.09004 * 109.46865 * 299.99248 * 18 16 15 38 38 H 1.08001 * 120.02451 * 0.02807 * 21 20 19 39 39 H 1.07997 * 119.97788 * 180.23116 * 22 21 20 40 40 H 1.08005 * 119.97672 * 179.97438 * 25 23 22 41 41 H 1.08008 * 120.01747 * 180.02562 * 26 25 23 42 42 H 1.09002 * 109.87833 * 120.70032 * 27 15 14 43 43 H 1.08990 * 109.88391 * 241.86908 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1206 1.2489 0.4688 5 6 1.5957 2.3072 -0.6025 6 7 1.9093 3.5097 -0.1691 7 14 0.4053 2.1091 -2.0284 8 1 -0.9887 2.1422 -1.5176 9 1 0.6042 3.2173 -2.9968 10 1 0.6542 0.8105 -2.7043 11 6 2.1976 -1.2687 0.0006 12 1 3.2726 -1.0916 -0.0295 13 6 1.7549 -2.1631 -1.1875 14 6 2.0760 -3.5800 -0.6438 15 7 1.7367 -3.5172 0.7895 16 6 1.4112 -4.5692 1.5666 17 8 1.1546 -4.4000 2.7398 18 6 1.3662 -5.9556 0.9776 19 8 1.0001 -6.8926 1.9925 20 6 0.9128 -8.1981 1.6246 21 6 1.1685 -8.5684 0.3124 22 6 1.0835 -9.8964 -0.0587 23 6 0.7341 -10.8556 0.8753 24 17 0.6221 -12.5230 0.4052 25 6 0.4736 -10.4875 2.1834 26 6 0.5624 -9.1612 2.5594 27 6 1.8183 -2.1175 1.2323 28 1 -0.3633 0.0943 1.0234 29 1 -0.3633 0.8391 -0.5933 30 1 -0.3634 -0.9334 -0.4299 31 1 1.5225 4.2932 -0.5904 32 1 0.6892 -2.0494 -1.3862 33 1 2.3420 -1.9460 -2.0799 34 1 3.1339 -3.8079 -0.7735 35 1 1.4618 -4.3270 -1.1466 36 1 2.3483 -6.2143 0.5819 37 1 0.6310 -5.9849 0.1733 38 1 1.4377 -7.8195 -0.4178 39 1 1.2862 -10.1856 -1.0793 40 1 0.2006 -11.2376 2.9109 41 1 0.3594 -8.8744 3.5807 42 1 0.8526 -1.7951 1.6217 43 1 2.5833 -2.0163 2.0021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980293188.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:34 Heat of formation + Delta-G solvation = -6.860219 kcal Electronic energy + Delta-G solvation = -26109.790352 eV Core-core repulsion = 22182.885066 eV Total energy + Delta-G solvation = -3926.905286 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.81268 -39.82218 -38.22361 -37.41945 -36.50715 -35.09352 -32.05269 -31.69456 -30.72500 -30.20288 -29.09493 -27.65990 -26.24913 -24.02499 -23.24244 -22.60879 -22.47174 -19.62480 -19.36178 -18.88603 -17.23667 -17.08312 -16.92220 -16.77199 -16.32272 -16.03657 -15.19562 -15.07646 -14.93194 -14.35727 -14.02155 -13.89739 -13.66558 -13.44809 -13.24037 -13.14317 -12.74021 -12.62246 -12.45595 -12.33566 -12.13312 -12.00349 -11.74796 -11.59591 -11.19116 -11.11471 -11.10540 -10.97411 -10.60383 -10.30286 -10.04995 -9.87650 -9.60589 -9.60045 -8.61354 -8.57995 -8.56892 -7.09941 -6.10929 -3.43387 0.73927 0.77929 1.75715 2.24527 2.48521 3.15458 3.24522 3.31237 3.40409 3.43681 4.13720 4.29345 4.35754 4.43474 4.54563 4.65274 4.66085 4.70313 4.87575 4.89953 5.01441 5.04782 5.23911 5.30850 5.43147 5.45746 5.51079 5.60871 5.74329 5.75204 5.78874 5.99425 6.06517 6.09609 6.20241 6.28626 6.34564 6.52713 6.61137 6.70090 6.86526 7.46281 7.85720 8.06976 8.22493 8.82917 9.59786 9.95121 11.04344 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.031448 B = 0.001894 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.153841 B =14780.489235 C =15248.400407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.595 5.595 3 C -0.277 4.277 4 H 0.084 0.916 5 C 0.036 3.964 6 N -0.889 5.889 7 Si 0.878 3.122 8 H -0.286 1.286 9 H -0.302 1.302 10 H -0.272 1.272 11 C 0.173 3.827 12 H 0.090 0.910 13 C -0.158 4.158 14 C 0.095 3.905 15 N -0.611 5.611 16 C 0.527 3.473 17 O -0.520 6.520 18 C 0.045 3.955 19 O -0.285 6.285 20 C 0.139 3.861 21 C -0.200 4.200 22 C -0.068 4.068 23 C -0.076 4.076 24 Cl -0.074 7.074 25 C -0.069 4.069 26 C -0.137 4.137 27 C 0.091 3.909 28 H 0.022 0.978 29 H 0.042 0.958 30 H 0.036 0.964 31 H 0.264 0.736 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.073 0.927 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.218 -28.592 -2.182 28.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.316 5.316 3 C -0.405 4.405 4 H 0.102 0.898 5 C -0.165 4.165 6 N -0.529 5.529 7 Si 0.709 3.291 8 H -0.215 1.215 9 H -0.231 1.231 10 H -0.197 1.197 11 C 0.063 3.937 12 H 0.108 0.892 13 C -0.198 4.198 14 C -0.028 4.028 15 N -0.347 5.347 16 C 0.313 3.687 17 O -0.396 6.396 18 C -0.034 4.034 19 O -0.196 6.196 20 C 0.093 3.907 21 C -0.219 4.219 22 C -0.086 4.086 23 C -0.103 4.103 24 Cl -0.045 7.045 25 C -0.088 4.088 26 C -0.155 4.155 27 C -0.033 4.033 28 H 0.040 0.960 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.156 0.844 39 H 0.154 0.846 40 H 0.159 0.841 41 H 0.161 0.839 42 H 0.092 0.908 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.431 -28.372 -1.345 28.440 hybrid contribution -0.682 -0.124 -1.290 1.464 sum -2.113 -28.497 -2.635 28.696 Atomic orbital electron populations 1.21349 0.84543 0.98765 0.98992 1.44040 1.00623 1.01315 1.85652 1.18783 1.04725 0.84942 1.32052 0.89833 1.25276 0.98112 0.94925 0.98212 1.69947 1.45567 0.97776 1.39641 0.86978 0.80457 0.77179 0.84497 1.21499 1.23061 1.19681 1.21438 0.97129 0.85359 0.89781 0.89162 1.23471 1.02812 0.92955 1.00522 1.22489 1.00342 0.99478 0.80470 1.48398 1.67788 1.07603 1.10883 1.19487 0.78275 0.84666 0.86281 1.90763 1.48029 1.85002 1.15766 1.22528 1.02342 0.87680 0.90815 1.86193 1.83537 1.13435 1.36475 1.19158 0.94804 0.83764 0.92987 1.21256 1.07917 0.97142 0.95600 1.20840 0.97087 0.91316 0.99387 1.20795 1.08666 0.85703 0.95119 1.98368 1.96952 1.16846 1.92340 1.20880 0.97723 0.95730 0.94432 1.20434 1.04396 0.90530 1.00182 1.22778 1.02602 0.78363 0.99543 0.96005 0.94047 0.94549 0.92568 0.90585 0.89803 0.90894 0.91248 0.88804 0.88864 0.84390 0.84553 0.84148 0.83873 0.90839 0.91414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.25 8.52 59.85 0.51 2.76 16 2 N -0.59 -13.14 2.61 -171.38 -0.45 -13.59 16 3 C -0.28 -7.34 9.87 -15.06 -0.15 -7.49 16 4 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 5 C 0.04 1.00 5.26 -17.43 -0.09 0.90 16 6 N -0.89 -26.25 13.97 55.49 0.78 -25.48 16 7 Si 0.88 21.23 25.14 -169.99 -4.27 16.96 16 8 H -0.29 -6.81 6.61 56.52 0.37 -6.44 16 9 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 10 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 11 C 0.17 3.00 3.43 -66.09 -0.23 2.77 16 12 H 0.09 1.57 7.94 -51.93 -0.41 1.16 16 13 C -0.16 -2.17 6.61 -24.46 -0.16 -2.33 16 14 C 0.10 0.99 6.70 -2.41 -0.02 0.97 16 15 N -0.61 -8.36 3.32 -170.38 -0.57 -8.92 16 16 C 0.53 7.55 7.93 -10.98 -0.09 7.47 16 17 O -0.52 -9.87 16.83 -14.35 -0.24 -10.11 16 18 C 0.04 0.44 4.22 36.01 0.15 0.60 16 19 O -0.28 -3.41 9.67 -39.39 -0.38 -3.79 16 20 C 0.14 1.35 6.69 -39.23 -0.26 1.09 16 21 C -0.20 -1.54 9.04 -39.44 -0.36 -1.90 16 22 C -0.07 -0.49 9.82 -39.57 -0.39 -0.88 16 23 C -0.08 -0.60 6.32 -39.49 -0.25 -0.85 16 24 Cl -0.07 -0.55 28.95 -51.86 -1.50 -2.06 16 25 C -0.07 -0.52 9.82 -39.57 -0.39 -0.91 16 26 C -0.14 -1.20 9.99 -39.44 -0.39 -1.59 16 27 C 0.09 1.51 6.50 -3.06 -0.02 1.49 16 28 H 0.02 0.46 8.07 -51.93 -0.42 0.04 16 29 H 0.04 0.94 2.58 -51.93 -0.13 0.81 16 30 H 0.04 0.65 6.14 -51.93 -0.32 0.33 16 31 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.08 1.11 6.16 -51.93 -0.32 0.79 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.53 7.48 -51.93 -0.39 0.14 16 36 H 0.09 0.67 7.67 -51.93 -0.40 0.28 16 37 H 0.09 0.70 7.36 -51.93 -0.38 0.31 16 38 H 0.14 0.76 6.30 -52.49 -0.33 0.43 16 39 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 41 H 0.14 1.13 8.06 -52.48 -0.42 0.71 16 42 H 0.07 1.36 7.06 -51.93 -0.37 1.00 16 43 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 363.78 15.07 5.48 5.48 Total: -1.00 -32.65 363.78 -8.88 -41.53 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -5.59 Total: -2.13 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -2.13 Total: 2.11 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: -0.24 Total: -47.99 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -0.62 Total: -13.90 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.27 Total: 16.96 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.50 Total: -2.06 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.65 -8.88 -41.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980293188.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.670 kcal (2) G-P(sol) polarization free energy of solvation -32.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds