Wall clock time and date at job start Tue Mar 31 2020 21:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36940 * 119.99986 * 2 1 4 4 H 1.08001 * 120.00153 * 149.91983 * 3 2 1 5 5 C 1.38819 * 119.99777 * 329.92213 * 3 2 1 6 6 N 1.31614 * 119.99866 * 151.70487 * 5 3 2 7 7 Si 1.86800 * 119.99876 * 331.70775 * 5 3 2 8 8 H 1.48493 * 109.47271 * 95.38480 * 7 5 3 9 9 H 1.48507 * 109.46818 * 215.38642 * 7 5 3 10 10 H 1.48504 * 109.47048 * 335.37952 * 7 5 3 11 11 C 1.46503 * 120.00326 * 179.97438 * 2 1 3 12 12 H 1.08992 * 110.64012 * 178.31302 * 11 2 1 13 13 C 1.55158 * 110.86837 * 55.06163 * 11 2 1 14 14 C 1.55129 * 101.48071 * 205.89974 * 13 11 2 15 15 N 1.47425 * 104.72694 * 37.29834 * 14 13 11 16 16 C 1.34776 * 125.65190 * 155.81309 * 15 14 13 17 17 O 1.21279 * 119.99908 * 179.69418 * 16 15 14 18 18 C 1.50703 * 119.99748 * 359.69654 * 16 15 14 19 19 O 1.42902 * 109.47067 * 179.97438 * 18 16 15 20 20 C 1.35919 * 117.00217 * 179.97438 * 19 18 16 21 21 C 1.38723 * 120.03779 * 359.72244 * 20 19 18 22 22 C 1.38148 * 119.95088 * 179.79020 * 21 20 19 23 23 C 1.38360 * 120.04432 * 0.46439 * 22 21 20 24 24 Cl 1.73599 * 119.95895 * 179.77028 * 23 22 21 25 25 C 1.38368 * 120.08441 * 359.78545 * 23 22 21 26 26 C 1.38139 * 120.04228 * 359.97438 * 25 23 22 27 27 C 1.47026 * 108.69964 * 335.55041 * 15 14 13 28 28 H 1.09005 * 109.47101 * 275.26337 * 1 2 3 29 29 H 1.08996 * 109.47168 * 35.26273 * 1 2 3 30 30 H 1.08999 * 109.47285 * 155.26972 * 1 2 3 31 31 H 0.97004 * 119.99766 * 179.97438 * 6 5 3 32 32 H 1.09001 * 111.00356 * 324.13535 * 13 11 2 33 33 H 1.08999 * 111.00199 * 87.95524 * 13 11 2 34 34 H 1.08995 * 110.49856 * 278.45208 * 14 13 11 35 35 H 1.09006 * 110.34293 * 156.06121 * 14 13 11 36 36 H 1.08996 * 109.47372 * 59.99728 * 18 16 15 37 37 H 1.09004 * 109.46865 * 299.99248 * 18 16 15 38 38 H 1.08001 * 120.02451 * 0.02807 * 21 20 19 39 39 H 1.07997 * 119.97788 * 180.23116 * 22 21 20 40 40 H 1.08005 * 119.97672 * 179.97438 * 25 23 22 41 41 H 1.08008 * 120.01747 * 180.02562 * 26 25 23 42 42 H 1.09002 * 109.87833 * 120.70032 * 27 15 14 43 43 H 1.08990 * 109.88391 * 241.86908 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1206 1.2489 0.4688 5 6 1.5957 2.3072 -0.6025 6 7 1.9093 3.5097 -0.1691 7 14 0.4053 2.1091 -2.0284 8 1 -0.9887 2.1422 -1.5176 9 1 0.6042 3.2173 -2.9968 10 1 0.6542 0.8105 -2.7043 11 6 2.1976 -1.2687 0.0006 12 1 3.2726 -1.0916 -0.0295 13 6 1.7549 -2.1631 -1.1875 14 6 2.0760 -3.5800 -0.6438 15 7 1.7367 -3.5172 0.7895 16 6 1.4112 -4.5692 1.5666 17 8 1.1546 -4.4000 2.7398 18 6 1.3662 -5.9556 0.9776 19 8 1.0001 -6.8926 1.9925 20 6 0.9128 -8.1981 1.6246 21 6 1.1685 -8.5684 0.3124 22 6 1.0835 -9.8964 -0.0587 23 6 0.7341 -10.8556 0.8753 24 17 0.6221 -12.5230 0.4052 25 6 0.4736 -10.4875 2.1834 26 6 0.5624 -9.1612 2.5594 27 6 1.8183 -2.1175 1.2323 28 1 -0.3633 0.0943 1.0234 29 1 -0.3633 0.8391 -0.5933 30 1 -0.3634 -0.9334 -0.4299 31 1 1.5225 4.2932 -0.5904 32 1 0.6892 -2.0494 -1.3862 33 1 2.3420 -1.9460 -2.0799 34 1 3.1339 -3.8079 -0.7735 35 1 1.4618 -4.3270 -1.1466 36 1 2.3483 -6.2143 0.5819 37 1 0.6310 -5.9849 0.1733 38 1 1.4377 -7.8195 -0.4178 39 1 1.2862 -10.1856 -1.0793 40 1 0.2006 -11.2376 2.9109 41 1 0.3594 -8.8744 3.5807 42 1 0.8526 -1.7951 1.6217 43 1 2.5833 -2.0163 2.0021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980293188.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:33 Heat of formation + Delta-G solvation = -26.791194 kcal Electronic energy + Delta-G solvation = -26110.654624 eV Core-core repulsion = 22182.885066 eV Total energy + Delta-G solvation = -3927.769558 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.61283 -40.79614 -39.19450 -38.42177 -37.11175 -36.66409 -33.85693 -32.35334 -31.90523 -31.02012 -30.07631 -28.71695 -28.04491 -25.35225 -24.10342 -23.75354 -23.13820 -20.99594 -20.43924 -19.54861 -18.99261 -18.06429 -17.98085 -17.60436 -17.41673 -17.07094 -16.51321 -16.08289 -15.75863 -15.50848 -15.09268 -14.89356 -14.65832 -14.54835 -14.40794 -14.36972 -14.17633 -13.98984 -13.55551 -13.28618 -13.20569 -13.03019 -12.82917 -12.56146 -12.42999 -12.38470 -12.31556 -12.05042 -11.74206 -11.72387 -11.59378 -11.40586 -11.01924 -10.60655 -10.14291 -9.74821 -9.18745 -8.95758 -8.22076 -5.50795 0.16371 0.21748 1.18402 1.32887 1.38051 1.43633 1.43938 1.55045 2.42864 2.45582 2.58318 2.97837 3.25662 3.37209 3.71360 3.75319 3.82561 3.93518 3.97822 4.05767 4.14991 4.24631 4.31780 4.33918 4.38551 4.49137 4.50657 4.69069 4.70761 4.83049 4.91645 4.92835 4.96212 4.98732 5.15398 5.18948 5.23736 5.25747 5.35406 5.52741 5.86309 6.13381 6.21545 6.44156 6.89918 7.00397 7.60140 7.98652 8.97461 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.031448 B = 0.001894 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.153841 B =14780.489235 C =15248.400407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.608 5.608 3 C -0.266 4.266 4 H 0.048 0.952 5 C -0.025 4.025 6 N -0.943 5.943 7 Si 0.947 3.053 8 H -0.281 1.281 9 H -0.312 1.312 10 H -0.248 1.248 11 C 0.165 3.835 12 H 0.084 0.916 13 C -0.149 4.149 14 C 0.100 3.900 15 N -0.608 5.608 16 C 0.521 3.479 17 O -0.581 6.581 18 C 0.051 3.949 19 O -0.317 6.317 20 C 0.120 3.880 21 C -0.194 4.194 22 C -0.069 4.069 23 C -0.085 4.085 24 Cl -0.073 7.073 25 C -0.071 4.071 26 C -0.152 4.152 27 C 0.100 3.900 28 H 0.012 0.988 29 H 0.027 0.973 30 H 0.072 0.928 31 H 0.263 0.737 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.115 0.885 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.167 0.833 39 H 0.158 0.842 40 H 0.154 0.846 41 H 0.140 0.860 42 H 0.049 0.951 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.710 -32.050 -5.237 32.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.330 5.330 3 C -0.395 4.395 4 H 0.066 0.934 5 C -0.221 4.221 6 N -0.586 5.586 7 Si 0.776 3.224 8 H -0.209 1.209 9 H -0.241 1.241 10 H -0.172 1.172 11 C 0.057 3.943 12 H 0.102 0.898 13 C -0.188 4.188 14 C -0.021 4.021 15 N -0.343 5.343 16 C 0.310 3.690 17 O -0.460 6.460 18 C -0.026 4.026 19 O -0.230 6.230 20 C 0.074 3.926 21 C -0.212 4.212 22 C -0.087 4.087 23 C -0.111 4.111 24 Cl -0.044 7.044 25 C -0.090 4.090 26 C -0.171 4.171 27 C -0.025 4.025 28 H 0.030 0.970 29 H 0.045 0.955 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.133 0.867 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.185 0.815 39 H 0.175 0.825 40 H 0.172 0.828 41 H 0.158 0.842 42 H 0.067 0.933 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.917 -31.912 -4.443 32.276 hybrid contribution -0.463 0.869 -0.204 1.006 sum -2.380 -31.042 -4.648 31.479 Atomic orbital electron populations 1.21371 0.83823 0.99912 0.98529 1.44070 1.01238 1.01613 1.86102 1.18699 1.03457 0.86872 1.30459 0.93390 1.25925 1.01032 0.94490 1.00703 1.70080 1.48512 0.98704 1.41320 0.85862 0.78336 0.77573 0.80631 1.20897 1.24100 1.17207 1.21566 0.96498 0.84147 0.92119 0.89750 1.23356 1.02671 0.93838 0.98971 1.22761 1.03082 0.98339 0.77924 1.48423 1.67348 1.06058 1.12446 1.20399 0.76672 0.86361 0.85589 1.90739 1.50647 1.86062 1.18563 1.22634 1.05344 0.84245 0.90416 1.86142 1.84288 1.14598 1.37978 1.19345 0.96128 0.82902 0.94181 1.21518 1.06777 0.97874 0.95057 1.21131 0.96296 0.91070 1.00233 1.20991 1.08694 0.86019 0.95425 1.98370 1.96946 1.16815 1.92283 1.21029 0.97424 0.95575 0.94936 1.20571 1.05011 0.91120 1.00359 1.22379 1.00622 0.80734 0.98796 0.96957 0.95528 0.90977 0.92813 0.90897 0.88436 0.88107 0.86668 0.85238 0.85424 0.81547 0.82455 0.82823 0.84203 0.93287 0.93151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.38 8.52 127.77 1.09 5.47 16 2 N -0.61 -26.68 2.61 -696.14 -1.82 -28.50 16 3 C -0.27 -14.42 9.87 84.03 0.83 -13.59 16 4 H 0.05 2.87 8.06 -2.91 -0.02 2.84 16 5 C -0.02 -1.39 5.26 84.86 0.45 -0.95 16 6 N -0.94 -57.75 13.97 21.65 0.30 -57.44 16 7 Si 0.95 43.99 25.14 68.60 1.72 45.71 16 8 H -0.28 -12.67 6.61 99.48 0.66 -12.02 16 9 H -0.31 -14.85 7.11 99.48 0.71 -14.15 16 10 H -0.25 -10.47 7.11 99.48 0.71 -9.77 16 11 C 0.16 5.53 3.43 46.18 0.16 5.69 16 12 H 0.08 2.90 7.94 -2.39 -0.02 2.89 16 13 C -0.15 -3.47 6.61 32.06 0.21 -3.26 16 14 C 0.10 1.53 6.70 86.93 0.58 2.12 16 15 N -0.61 -14.99 3.32 -811.35 -2.70 -17.69 16 16 C 0.52 13.88 7.93 87.66 0.69 14.57 16 17 O -0.58 -22.25 16.83 16.01 0.27 -21.98 16 18 C 0.05 0.80 4.22 71.24 0.30 1.10 16 19 O -0.32 -6.98 9.67 -73.61 -0.71 -7.69 16 20 C 0.12 2.06 6.69 22.50 0.15 2.21 16 21 C -0.19 -2.20 9.04 22.36 0.20 -2.00 16 22 C -0.07 -0.76 9.82 22.28 0.22 -0.54 16 23 C -0.08 -1.14 6.32 22.33 0.14 -0.99 16 24 Cl -0.07 -0.94 28.95 -2.72 -0.08 -1.02 16 25 C -0.07 -0.97 9.82 22.28 0.22 -0.76 16 26 C -0.15 -2.51 9.99 22.36 0.22 -2.29 16 27 C 0.10 3.28 6.50 86.73 0.56 3.85 16 28 H 0.01 0.51 8.07 -2.38 -0.02 0.49 16 29 H 0.03 1.17 2.58 -2.39 -0.01 1.16 16 30 H 0.07 2.39 6.14 -2.39 -0.01 2.37 16 31 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 32 H 0.07 1.79 6.16 -2.39 -0.01 1.77 16 33 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.12 0.85 7.48 -2.38 -0.02 0.84 16 36 H 0.13 1.11 7.67 -2.39 -0.02 1.10 16 37 H 0.13 1.13 7.36 -2.39 -0.02 1.11 16 38 H 0.17 0.82 6.30 -2.91 -0.02 0.80 16 39 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 40 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 41 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 42 H 0.05 1.85 7.06 -2.39 -0.02 1.83 16 43 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -76.55 363.78 4.01 -72.54 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: 0.99 Total: 5.45 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: 6.03 Total: 10.63 kcal Atomic # 7 Polarization: -99.42 SS G_CDS: -4.21 Total: -103.63 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -0.44 Total: -29.67 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.72 Total: 45.71 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -0.08 Total: -1.02 kcal Total: -76.55 4.01 -72.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980293188.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.746 kcal (2) G-P(sol) polarization free energy of solvation -76.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds