Wall clock time and date at job start Tue Mar 31 2020 21:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35658 * 117.00104 * 2 1 4 4 C 1.38672 * 120.14294 * 0.27756 * 3 2 1 5 5 C 1.38096 * 120.11935 * 180.30193 * 4 3 2 6 6 C 1.38474 * 120.41333 * 359.71608 * 5 4 3 7 7 C 1.37964 * 120.28697 * 359.97438 * 6 5 4 8 8 Cl 1.73595 * 120.06780 * 179.97438 * 7 6 5 9 9 C 1.39842 * 119.86872 * 0.02562 * 7 6 5 10 10 C 1.47464 * 120.20342 * 179.97438 * 9 7 6 11 11 O 1.21599 * 119.99408 * 89.99871 * 10 9 7 12 12 N 1.34772 * 120.00080 * 270.00013 * 10 9 7 13 13 C 1.47424 * 125.64999 * 0.02565 * 12 10 9 14 14 C 1.54910 * 104.83412 * 155.83382 * 13 12 10 15 15 C 1.55158 * 101.58050 * 37.00785 * 14 13 12 16 16 H 1.09001 * 110.72195 * 83.04147 * 15 14 13 17 17 N 1.46504 * 110.72129 * 206.13517 * 15 14 13 18 18 C 1.46498 * 119.99660 * 59.99859 * 17 15 14 19 19 C 1.36932 * 119.99865 * 239.99827 * 17 15 14 20 20 H 1.08001 * 120.00173 * 340.11211 * 19 17 15 21 21 C 1.38816 * 119.99605 * 159.83012 * 19 17 15 22 22 N 1.31611 * 120.00326 * 347.22917 * 21 19 17 23 23 Si 1.86800 * 119.99550 * 167.22359 * 21 19 17 24 24 H 1.48498 * 109.47541 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46811 * 120.00414 * 23 21 19 26 26 H 1.48495 * 109.47205 * 239.99975 * 23 21 19 27 27 C 1.47026 * 125.64608 * 179.97438 * 12 10 9 28 28 H 1.08999 * 109.47112 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46974 * 300.00137 * 1 2 3 30 30 H 1.08999 * 109.47061 * 59.99471 * 1 2 3 31 31 H 1.08004 * 119.94101 * 0.04372 * 4 3 2 32 32 H 1.08002 * 119.79380 * 179.69999 * 5 4 3 33 33 H 1.08003 * 119.85487 * 180.02562 * 6 5 4 34 34 H 1.08996 * 110.36857 * 36.99640 * 13 12 10 35 35 H 1.09000 * 110.36581 * 274.67318 * 13 12 10 36 36 H 1.08995 * 111.00416 * 278.93779 * 14 13 12 37 37 H 1.08998 * 111.03706 * 155.09516 * 14 13 12 38 38 H 1.09001 * 109.47091 * 264.77993 * 18 17 15 39 39 H 1.08997 * 109.47193 * 24.78495 * 18 17 15 40 40 H 1.09000 * 109.47000 * 144.78292 * 18 17 15 41 41 H 0.96998 * 120.00497 * 180.02562 * 22 21 19 42 42 H 1.08997 * 109.88084 * 61.67885 * 27 12 10 43 43 H 1.09005 * 109.88311 * 300.51346 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2926 2.3736 0.0058 5 6 1.9200 3.6038 -0.0005 6 6 3.3023 3.6857 -0.0067 7 6 4.0674 2.5375 -0.0061 8 17 5.7999 2.6468 -0.0146 9 6 3.4444 1.2856 0.0002 10 6 4.2549 0.0536 0.0003 11 8 4.5936 -0.4511 1.0534 12 7 4.6203 -0.5127 -1.1668 13 6 4.2808 -0.0085 -2.5099 14 6 5.3832 -0.5778 -3.4376 15 6 5.6120 -1.9839 -2.8228 16 1 4.8719 -2.6925 -3.1947 17 7 6.9689 -2.4586 -3.1053 18 6 8.1256 -1.6945 -2.6317 19 6 7.1559 -3.6164 -3.8121 20 1 6.3569 -4.3393 -3.8856 21 6 8.3706 -3.8584 -4.4390 22 7 9.2478 -2.8862 -4.5718 23 14 8.7602 -5.5639 -5.0938 24 1 7.6172 -6.4719 -4.8213 25 1 8.9949 -5.4900 -6.5583 26 1 9.9781 -6.0854 -4.4231 27 6 5.4243 -1.7351 -1.3114 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 0.2140 2.3187 0.0111 32 1 1.3289 4.5077 -0.0008 33 1 3.7836 4.6525 -0.0112 34 1 4.3002 1.0812 -2.5222 35 1 3.3009 -0.3748 -2.8161 36 1 6.2897 0.0248 -3.3825 37 1 5.0288 -0.6538 -4.4655 38 1 8.4748 -1.0343 -3.4256 39 1 7.8379 -1.0998 -1.7648 40 1 8.9248 -2.3810 -2.3522 41 1 10.0964 -3.0551 -5.0102 42 1 4.9019 -2.5780 -0.8590 43 1 6.3951 -1.5989 -0.8347 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980483678.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:05 Heat of formation + Delta-G solvation = -10.890410 kcal Electronic energy + Delta-G solvation = -27597.737947 eV Core-core repulsion = 23670.657899 eV Total energy + Delta-G solvation = -3927.080048 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.82105 -39.31553 -37.95968 -37.18939 -36.45418 -34.73679 -32.04811 -31.17890 -30.42689 -29.65932 -27.96075 -27.56576 -26.03130 -24.61415 -22.89146 -22.52523 -22.17488 -19.84302 -19.12199 -18.37929 -17.19146 -17.06037 -16.79642 -16.19064 -15.85890 -15.63471 -15.33581 -14.78235 -14.61969 -14.29725 -13.67080 -13.56712 -13.34973 -13.24041 -12.86637 -12.54626 -12.41926 -12.30353 -12.17083 -12.11027 -11.66639 -11.60779 -11.33080 -11.19309 -11.13995 -10.94443 -10.76793 -10.52535 -10.39851 -10.19293 -9.90604 -9.81852 -9.68992 -9.12107 -8.62619 -8.55518 -8.24936 -6.81420 -5.72859 -3.17683 0.64499 0.91853 1.80235 2.76558 2.94046 3.08316 3.33012 3.38657 3.46194 3.47977 4.30675 4.47859 4.50781 4.65020 4.75000 4.80949 4.87178 4.92828 5.10970 5.13444 5.19541 5.33940 5.40327 5.59536 5.64188 5.73018 5.75878 5.84715 5.90591 5.95311 6.06517 6.10768 6.36017 6.46542 6.61800 6.68607 6.86999 6.92661 6.93297 7.42974 7.73219 7.81461 7.82641 8.34777 8.39085 9.22125 9.84868 10.32661 11.32021 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018095 B = 0.003193 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.030832 B = 8766.901315 C = 9610.323202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.303 6.303 3 C 0.172 3.828 4 C -0.209 4.209 5 C -0.055 4.055 6 C -0.150 4.150 7 C 0.029 3.971 8 Cl -0.040 7.040 9 C -0.141 4.141 10 C 0.585 3.415 11 O -0.532 6.532 12 N -0.597 5.597 13 C 0.102 3.898 14 C -0.150 4.150 15 C 0.174 3.826 16 H 0.079 0.921 17 N -0.587 5.587 18 C 0.161 3.839 19 C -0.257 4.257 20 H 0.072 0.928 21 C 0.002 3.998 22 N -0.906 5.906 23 Si 0.906 3.094 24 H -0.278 1.278 25 H -0.291 1.291 26 H -0.289 1.289 27 C 0.088 3.912 28 H 0.105 0.895 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.031 0.969 39 H 0.001 0.999 40 H 0.046 0.954 41 H 0.252 0.748 42 H 0.062 0.938 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.705 14.835 7.254 24.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.215 6.215 3 C 0.125 3.875 4 C -0.227 4.227 5 C -0.074 4.074 6 C -0.169 4.169 7 C 0.001 3.999 8 Cl -0.011 7.011 9 C -0.146 4.146 10 C 0.371 3.629 11 O -0.409 6.409 12 N -0.330 5.330 13 C -0.021 4.021 14 C -0.190 4.190 15 C 0.064 3.936 16 H 0.097 0.903 17 N -0.308 5.308 18 C 0.017 3.983 19 C -0.386 4.386 20 H 0.089 0.911 21 C -0.196 4.196 22 N -0.551 5.551 23 Si 0.736 3.264 24 H -0.203 1.203 25 H -0.218 1.218 26 H -0.216 1.216 27 C -0.036 4.036 28 H 0.123 0.877 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.157 0.843 32 H 0.156 0.844 33 H 0.159 0.841 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.049 0.951 39 H 0.020 0.980 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.080 0.920 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.087 14.339 7.795 24.362 hybrid contribution 0.155 -0.585 -0.457 0.759 sum -17.932 13.754 7.338 23.760 Atomic orbital electron populations 1.23172 0.77572 1.04639 1.01480 1.86141 1.21915 1.25907 1.87525 1.18726 0.90037 0.85109 0.93651 1.21270 1.00546 0.91824 1.09099 1.20978 0.93668 0.97444 0.95268 1.20911 0.93644 0.97328 1.05056 1.20668 0.86108 0.92758 1.00353 1.98434 1.07982 1.98327 1.96327 1.19023 0.91246 0.93618 1.10709 1.17277 0.79484 0.83001 0.83117 1.90797 1.55880 1.63574 1.30617 1.48341 1.52092 1.27301 1.05216 1.22331 0.98966 0.98546 0.82261 1.23384 0.97597 0.99675 0.98357 1.21284 0.89225 0.93214 0.89907 0.90316 1.43901 0.98709 1.25999 1.62181 1.20815 0.88704 0.94695 0.94108 1.19295 0.99466 0.94345 1.25511 0.91052 1.24967 0.98093 0.97674 0.98856 1.70099 1.08874 1.29853 1.46323 0.86161 0.78063 0.83992 0.78169 1.20310 1.21785 1.21621 1.22770 0.95270 0.84961 1.00583 0.87714 0.92314 0.92213 0.84312 0.84377 0.84146 0.91729 0.91741 0.90551 0.90396 0.95109 0.98012 0.93572 0.93785 0.91962 0.90640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.30 -3.75 9.94 -18.67 -0.19 -3.94 16 3 C 0.17 2.12 6.70 -38.70 -0.26 1.86 16 4 C -0.21 -1.80 9.03 -39.47 -0.36 -2.15 16 5 C -0.06 -0.42 10.03 -39.55 -0.40 -0.82 16 6 C -0.15 -1.43 9.81 -39.59 -0.39 -1.81 16 7 C 0.03 0.37 6.35 -39.08 -0.25 0.13 16 8 Cl -0.04 -0.56 28.04 -51.86 -1.45 -2.02 16 9 C -0.14 -2.09 4.54 -104.82 -0.48 -2.57 16 10 C 0.58 10.69 5.87 -12.50 -0.07 10.62 16 11 O -0.53 -11.63 17.43 5.28 0.09 -11.54 16 12 N -0.60 -10.53 3.33 -171.77 -0.57 -11.10 16 13 C 0.10 1.54 6.68 -2.53 -0.02 1.52 16 14 C -0.15 -2.61 6.66 -24.58 -0.16 -2.78 16 15 C 0.17 3.52 3.45 -66.09 -0.23 3.29 16 16 H 0.08 1.55 7.91 -51.93 -0.41 1.14 16 17 N -0.59 -14.53 2.94 -171.38 -0.50 -15.04 16 18 C 0.16 4.01 7.73 59.85 0.46 4.47 16 19 C -0.26 -6.95 9.65 -15.06 -0.15 -7.09 16 20 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 21 C 0.00 0.06 5.11 -17.43 -0.09 -0.03 16 22 N -0.91 -26.20 10.53 55.49 0.58 -25.62 16 23 Si 0.91 21.75 29.57 -169.99 -5.03 16.73 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 C 0.09 1.72 6.40 -3.06 -0.02 1.70 16 28 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.32 7.65 -51.92 -0.40 -0.08 16 30 H 0.06 0.31 7.67 -51.93 -0.40 -0.09 16 31 H 0.14 0.78 6.30 -52.48 -0.33 0.45 16 32 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 33 H 0.14 1.02 8.06 -52.48 -0.42 0.59 16 34 H 0.06 0.89 7.69 -51.93 -0.40 0.50 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 1.46 7.34 -51.93 -0.38 1.08 16 37 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.03 0.82 7.41 -51.93 -0.38 0.43 16 39 H 0.00 0.03 6.16 -51.93 -0.32 -0.29 16 40 H 0.05 1.25 7.14 -51.93 -0.37 0.88 16 41 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.08 1.63 6.00 -51.93 -0.31 1.32 16 LS Contribution 366.99 15.07 5.53 5.53 Total: -1.00 -33.52 366.99 -8.73 -42.25 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -5.79 Total: -2.77 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: -1.41 Total: 7.52 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: -0.49 Total: -51.76 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.09 Total: -15.48 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.73 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.45 Total: -2.02 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.52 -8.73 -42.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980483678.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.356 kcal (2) G-P(sol) polarization free energy of solvation -33.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds