Wall clock time and date at job start Tue Mar 31 2020 21:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35658 * 117.00104 * 2 1 4 4 C 1.38672 * 120.14294 * 0.27756 * 3 2 1 5 5 C 1.38096 * 120.11935 * 180.30193 * 4 3 2 6 6 C 1.38474 * 120.41333 * 359.71608 * 5 4 3 7 7 C 1.37964 * 120.28697 * 359.97438 * 6 5 4 8 8 Cl 1.73595 * 120.06780 * 179.97438 * 7 6 5 9 9 C 1.39842 * 119.86872 * 0.02562 * 7 6 5 10 10 C 1.47464 * 120.20342 * 179.97438 * 9 7 6 11 11 O 1.21599 * 119.99408 * 89.99871 * 10 9 7 12 12 N 1.34772 * 120.00080 * 270.00013 * 10 9 7 13 13 C 1.47424 * 125.64999 * 0.02565 * 12 10 9 14 14 C 1.54910 * 104.83412 * 155.83382 * 13 12 10 15 15 C 1.55158 * 101.58050 * 37.00785 * 14 13 12 16 16 H 1.09001 * 110.72195 * 83.04147 * 15 14 13 17 17 N 1.46504 * 110.72129 * 206.13517 * 15 14 13 18 18 C 1.46498 * 119.99660 * 59.99859 * 17 15 14 19 19 C 1.36932 * 119.99865 * 239.99827 * 17 15 14 20 20 H 1.08001 * 120.00173 * 340.11211 * 19 17 15 21 21 C 1.38816 * 119.99605 * 159.83012 * 19 17 15 22 22 N 1.31611 * 120.00326 * 347.22917 * 21 19 17 23 23 Si 1.86800 * 119.99550 * 167.22359 * 21 19 17 24 24 H 1.48498 * 109.47541 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46811 * 120.00414 * 23 21 19 26 26 H 1.48495 * 109.47205 * 239.99975 * 23 21 19 27 27 C 1.47026 * 125.64608 * 179.97438 * 12 10 9 28 28 H 1.08999 * 109.47112 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46974 * 300.00137 * 1 2 3 30 30 H 1.08999 * 109.47061 * 59.99471 * 1 2 3 31 31 H 1.08004 * 119.94101 * 0.04372 * 4 3 2 32 32 H 1.08002 * 119.79380 * 179.69999 * 5 4 3 33 33 H 1.08003 * 119.85487 * 180.02562 * 6 5 4 34 34 H 1.08996 * 110.36857 * 36.99640 * 13 12 10 35 35 H 1.09000 * 110.36581 * 274.67318 * 13 12 10 36 36 H 1.08995 * 111.00416 * 278.93779 * 14 13 12 37 37 H 1.08998 * 111.03706 * 155.09516 * 14 13 12 38 38 H 1.09001 * 109.47091 * 264.77993 * 18 17 15 39 39 H 1.08997 * 109.47193 * 24.78495 * 18 17 15 40 40 H 1.09000 * 109.47000 * 144.78292 * 18 17 15 41 41 H 0.96998 * 120.00497 * 180.02562 * 22 21 19 42 42 H 1.08997 * 109.88084 * 61.67885 * 27 12 10 43 43 H 1.09005 * 109.88311 * 300.51346 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2926 2.3736 0.0058 5 6 1.9200 3.6038 -0.0005 6 6 3.3023 3.6857 -0.0067 7 6 4.0674 2.5375 -0.0061 8 17 5.7999 2.6468 -0.0146 9 6 3.4444 1.2856 0.0002 10 6 4.2549 0.0536 0.0003 11 8 4.5936 -0.4511 1.0534 12 7 4.6203 -0.5127 -1.1668 13 6 4.2808 -0.0085 -2.5099 14 6 5.3832 -0.5778 -3.4376 15 6 5.6120 -1.9839 -2.8228 16 1 4.8719 -2.6925 -3.1947 17 7 6.9689 -2.4586 -3.1053 18 6 8.1256 -1.6945 -2.6317 19 6 7.1559 -3.6164 -3.8121 20 1 6.3569 -4.3393 -3.8856 21 6 8.3706 -3.8584 -4.4390 22 7 9.2478 -2.8862 -4.5718 23 14 8.7602 -5.5639 -5.0938 24 1 7.6172 -6.4719 -4.8213 25 1 8.9949 -5.4900 -6.5583 26 1 9.9781 -6.0854 -4.4231 27 6 5.4243 -1.7351 -1.3114 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 0.2140 2.3187 0.0111 32 1 1.3289 4.5077 -0.0008 33 1 3.7836 4.6525 -0.0112 34 1 4.3002 1.0812 -2.5222 35 1 3.3009 -0.3748 -2.8161 36 1 6.2897 0.0248 -3.3825 37 1 5.0288 -0.6538 -4.4655 38 1 8.4748 -1.0343 -3.4256 39 1 7.8379 -1.0998 -1.7648 40 1 8.9248 -2.3810 -2.3522 41 1 10.0964 -3.0551 -5.0102 42 1 4.9019 -2.5780 -0.8590 43 1 6.3951 -1.5989 -0.8347 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980483678.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:04 Heat of formation + Delta-G solvation = -32.046477 kcal Electronic energy + Delta-G solvation = -27598.655343 eV Core-core repulsion = 23670.657899 eV Total energy + Delta-G solvation = -3927.997444 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.79524 -40.55720 -39.01287 -38.54988 -37.36708 -36.57078 -33.59584 -32.48881 -31.24499 -31.13354 -29.43283 -28.24936 -28.10668 -25.94937 -24.39911 -23.59055 -23.26950 -21.13235 -20.71387 -19.27413 -18.97095 -18.34943 -17.83749 -17.38535 -17.07716 -16.67921 -16.41807 -16.17381 -15.67202 -15.53242 -15.10332 -15.04126 -14.70342 -14.47907 -14.33700 -14.11938 -13.85260 -13.36106 -13.22757 -13.02981 -12.87746 -12.86706 -12.83532 -12.58090 -12.38617 -12.36066 -12.27199 -12.12495 -12.04302 -11.89171 -11.82318 -11.54978 -11.11407 -10.65201 -9.99616 -9.72699 -9.39614 -8.86092 -7.83522 -5.30492 -0.16659 0.16115 0.89735 1.42337 1.47205 1.49405 1.59324 1.88820 2.25438 2.45412 2.51408 3.26182 3.34889 3.52858 3.77966 3.83135 3.94481 3.97271 4.08101 4.24014 4.25657 4.26983 4.36257 4.39838 4.40928 4.41280 4.58318 4.71403 4.74929 4.89462 4.92739 5.00862 5.07278 5.14025 5.19873 5.23295 5.32075 5.35674 5.48710 5.62272 5.68619 6.24160 6.28978 6.43474 6.97745 7.12319 7.82229 8.27146 9.20726 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018095 B = 0.003193 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.030832 B = 8766.901315 C = 9610.323202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.337 6.337 3 C 0.163 3.837 4 C -0.195 4.195 5 C -0.035 4.035 6 C -0.146 4.146 7 C 0.012 3.988 8 Cl -0.067 7.067 9 C -0.179 4.179 10 C 0.586 3.414 11 O -0.583 6.583 12 N -0.599 5.599 13 C 0.114 3.886 14 C -0.138 4.138 15 C 0.170 3.830 16 H 0.087 0.913 17 N -0.602 5.602 18 C 0.184 3.816 19 C -0.264 4.264 20 H 0.078 0.922 21 C -0.052 4.052 22 N -0.938 5.938 23 Si 0.971 3.029 24 H -0.265 1.265 25 H -0.290 1.290 26 H -0.295 1.295 27 C 0.099 3.901 28 H 0.111 0.889 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.176 0.824 32 H 0.186 0.814 33 H 0.164 0.836 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.056 0.944 37 H 0.092 0.908 38 H 0.009 0.991 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.248 0.752 42 H 0.057 0.943 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.510 16.663 6.779 28.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.251 6.251 3 C 0.115 3.885 4 C -0.214 4.214 5 C -0.053 4.053 6 C -0.165 4.165 7 C -0.015 4.015 8 Cl -0.038 7.038 9 C -0.183 4.183 10 C 0.375 3.625 11 O -0.463 6.463 12 N -0.330 5.330 13 C -0.008 4.008 14 C -0.179 4.179 15 C 0.062 3.938 16 H 0.105 0.895 17 N -0.323 5.323 18 C 0.039 3.961 19 C -0.394 4.394 20 H 0.096 0.904 21 C -0.247 4.247 22 N -0.585 5.585 23 Si 0.799 3.201 24 H -0.189 1.189 25 H -0.217 1.217 26 H -0.222 1.222 27 C -0.026 4.026 28 H 0.129 0.871 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.194 0.806 32 H 0.203 0.797 33 H 0.181 0.819 34 H 0.100 0.900 35 H 0.107 0.893 36 H 0.075 0.925 37 H 0.111 0.889 38 H 0.028 0.972 39 H 0.034 0.966 40 H 0.035 0.965 41 H 0.057 0.943 42 H 0.075 0.925 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -21.954 16.187 7.309 28.239 hybrid contribution 1.171 -1.098 -0.245 1.624 sum -20.783 15.089 7.063 26.637 Atomic orbital electron populations 1.23502 0.75015 1.05864 1.03383 1.86097 1.24695 1.26645 1.87614 1.18916 0.89261 0.86404 0.93904 1.21712 1.02166 0.90636 1.06869 1.21552 0.92937 0.98829 0.91975 1.21288 0.94547 0.96940 1.03691 1.20861 0.85002 0.93437 1.02225 1.98420 1.10426 1.98354 1.96600 1.18870 0.92254 0.92165 1.15039 1.17918 0.78799 0.83680 0.82145 1.90747 1.57914 1.65361 1.32300 1.48420 1.51629 1.26562 1.06422 1.22371 0.98874 0.99510 0.80039 1.23210 0.97816 0.97271 0.99567 1.21438 0.87128 0.94946 0.90323 0.89460 1.44047 1.00223 1.25906 1.62171 1.20433 0.88322 0.93610 0.93726 1.19656 0.99688 0.95268 1.24807 0.90384 1.25737 0.98154 1.01030 0.99764 1.70257 1.09069 1.31621 1.47532 0.85145 0.77720 0.80037 0.77168 1.18918 1.21739 1.22238 1.22430 0.94331 0.86121 0.99733 0.87104 0.90582 0.89941 0.80638 0.79709 0.81873 0.89989 0.89270 0.92525 0.88918 0.97245 0.96577 0.96502 0.94302 0.92471 0.93422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.34 -7.77 9.94 -89.73 -0.89 -8.66 16 3 C 0.16 3.62 6.70 22.84 0.15 3.77 16 4 C -0.20 -2.43 9.03 22.34 0.20 -2.23 16 5 C -0.04 -0.34 10.03 22.29 0.22 -0.12 16 6 C -0.15 -2.26 9.81 22.26 0.22 -2.04 16 7 C 0.01 0.30 6.35 22.59 0.14 0.44 16 8 Cl -0.07 -1.92 28.04 -2.72 -0.08 -1.99 16 9 C -0.18 -5.15 4.54 -19.99 -0.09 -5.24 16 10 C 0.59 21.91 5.87 86.68 0.51 22.42 16 11 O -0.58 -26.79 17.43 -4.03 -0.07 -26.86 16 12 N -0.60 -21.38 3.33 -815.61 -2.71 -24.09 16 13 C 0.11 3.30 6.68 86.86 0.58 3.88 16 14 C -0.14 -4.77 6.66 31.99 0.21 -4.56 16 15 C 0.17 6.94 3.45 46.18 0.16 7.10 16 16 H 0.09 3.40 7.91 -2.39 -0.02 3.38 16 17 N -0.60 -30.54 2.94 -696.14 -2.05 -32.59 16 18 C 0.18 9.60 7.73 127.77 0.99 10.59 16 19 C -0.26 -14.47 9.65 84.04 0.81 -13.66 16 20 H 0.08 4.08 7.81 -2.91 -0.02 4.06 16 21 C -0.05 -2.91 5.11 84.86 0.43 -2.48 16 22 N -0.94 -55.82 10.53 21.65 0.23 -55.60 16 23 Si 0.97 45.28 29.57 68.60 2.03 47.31 16 24 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 25 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 26 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 27 C 0.10 3.99 6.40 86.73 0.55 4.55 16 28 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.08 0.53 7.65 -2.38 -0.02 0.51 16 30 H 0.08 0.49 7.67 -2.39 -0.02 0.47 16 31 H 0.18 0.85 6.30 -2.91 -0.02 0.84 16 32 H 0.19 0.18 8.06 -2.91 -0.02 0.15 16 33 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 34 H 0.08 2.14 7.69 -2.39 -0.02 2.12 16 35 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.06 2.19 7.34 -2.39 -0.02 2.17 16 37 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 38 H 0.01 0.52 7.41 -2.39 -0.02 0.50 16 39 H 0.02 0.77 6.16 -2.39 -0.01 0.75 16 40 H 0.02 0.94 7.14 -2.39 -0.02 0.92 16 41 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 42 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.05 2.18 6.00 -2.38 -0.01 2.17 16 Total: -1.00 -77.71 366.99 3.70 -74.01 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: 1.03 Total: 4.77 kcal Atomic # 6 Polarization: 17.49 SS G_CDS: 6.21 Total: 23.70 kcal Atomic # 7 Polarization: -107.75 SS G_CDS: -4.53 Total: -112.28 kcal Atomic # 8 Polarization: -34.56 SS G_CDS: -0.96 Total: -35.52 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Atomic # 17 Polarization: -1.92 SS G_CDS: -0.08 Total: -1.99 kcal Total: -77.71 3.70 -74.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980483678.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.967 kcal (2) G-P(sol) polarization free energy of solvation -77.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds