Wall clock time and date at job start Tue Mar 31 2020 21:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35716 * 116.99791 * 2 1 4 4 C 1.39056 * 119.89548 * 179.97438 * 3 2 1 5 5 C 1.37649 * 120.12502 * 180.02562 * 4 3 2 6 6 C 1.39783 * 119.92007 * 0.02562 * 5 4 3 7 7 C 1.47534 * 120.09891 * 179.97438 * 6 5 4 8 8 O 1.21589 * 119.99968 * 205.75455 * 7 6 5 9 9 N 1.34773 * 119.99560 * 25.75207 * 7 6 5 10 10 C 1.48215 * 119.96697 * 172.53185 * 9 7 6 11 11 C 1.47726 * 110.06645 * 102.59512 * 10 9 7 12 12 C 1.53792 * 111.83612 * 58.36756 * 11 10 9 13 13 N 1.43464 * 107.96072 * 281.60542 * 12 11 10 14 14 C 1.36939 * 118.93423 * 273.62914 * 13 12 11 15 15 H 1.07996 * 120.00215 * 24.69297 * 14 13 12 16 16 C 1.38819 * 120.00077 * 204.69120 * 14 13 12 17 17 N 1.31627 * 119.99512 * 17.25206 * 16 14 13 18 18 Si 1.86797 * 120.00327 * 197.25083 * 16 14 13 19 19 H 1.48503 * 109.47158 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47167 * 120.00400 * 18 16 14 21 21 H 1.48505 * 109.46985 * 240.00242 * 18 16 14 22 22 C 1.48855 * 122.12604 * 93.65045 * 13 12 11 23 23 C 1.43623 * 119.97357 * 352.81011 * 9 7 6 24 24 C 1.39854 * 119.80113 * 359.97438 * 6 5 4 25 25 Cl 1.73600 * 120.06010 * 179.97438 * 24 6 5 26 26 C 1.37888 * 119.87797 * 0.25517 * 24 6 5 27 27 H 1.09002 * 109.47233 * 60.00632 * 1 2 3 28 28 H 1.08998 * 109.47121 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47662 * 300.00993 * 1 2 3 30 30 H 1.07999 * 119.94310 * 0.03980 * 4 3 2 31 31 H 1.07993 * 120.04195 * 179.97438 * 5 4 3 32 32 H 1.08995 * 109.33049 * 222.78046 * 10 9 7 33 33 H 1.09008 * 109.32431 * 342.25024 * 10 9 7 34 34 H 1.08997 * 109.06221 * 297.72709 * 11 10 9 35 35 H 1.09002 * 108.89145 * 178.89915 * 11 10 9 36 36 H 1.08995 * 109.76827 * 161.98313 * 12 11 10 37 37 H 1.09005 * 109.80532 * 41.23629 * 12 11 10 38 38 H 0.96996 * 119.99368 * 179.97438 * 17 16 14 39 39 H 1.09001 * 109.48138 * 200.61749 * 22 13 12 40 40 H 1.08997 * 109.48732 * 80.58603 * 22 13 12 41 41 H 1.09002 * 108.87050 * 31.42686 * 23 9 7 42 42 H 1.09002 * 108.87067 * 149.95941 * 23 9 7 43 43 H 1.07996 * 119.96447 * 179.74764 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 3.4338 1.2796 0.0005 5 6 4.0636 2.5035 0.0011 6 6 3.3053 3.6778 0.0016 7 6 3.9762 4.9918 0.0028 8 8 3.4079 5.9642 0.4608 9 7 5.2191 5.1141 -0.5038 10 6 5.8281 6.4569 -0.6551 11 6 6.8046 6.6954 0.4274 12 6 7.9164 5.6329 0.4392 13 7 7.3894 4.4479 1.0525 14 6 7.4427 4.3275 2.4156 15 1 7.4884 5.2115 3.0343 16 6 7.4380 3.0693 3.0020 17 7 7.7223 2.0059 2.2803 18 14 7.0281 2.8854 4.8151 19 1 6.7470 4.2223 5.3972 20 1 5.8319 2.0185 4.9668 21 1 8.1791 2.2689 5.5227 22 6 6.7869 3.3448 0.2551 23 6 5.9500 3.9437 -0.9023 24 6 1.9088 3.6034 0.0011 25 17 0.9604 5.0575 0.0024 26 6 1.2865 2.3729 0.0053 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 4.0195 0.3722 0.0003 31 1 5.1422 2.5566 0.0019 32 1 6.3339 6.5172 -1.6186 33 1 5.0455 7.2147 -0.6133 34 1 6.2855 6.6766 1.3857 35 1 7.2543 7.6783 0.2868 36 1 8.7684 5.9972 1.0131 37 1 8.2272 5.4122 -0.5820 38 1 7.7194 1.1268 2.6902 39 1 6.1426 2.7429 0.8959 40 1 7.5788 2.7184 -0.1554 41 1 5.2449 3.1906 -1.2542 42 1 6.6203 4.2081 -1.7201 43 1 0.2081 2.3138 0.0090 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982251879.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:25 Heat of formation + Delta-G solvation = 14.294522 kcal Electronic energy + Delta-G solvation = -28631.405066 eV Core-core repulsion = 24705.417118 eV Total energy + Delta-G solvation = -3925.987948 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.98834 -40.76267 -38.78664 -38.28576 -37.37906 -35.94102 -34.66074 -32.94635 -32.01591 -31.19773 -29.58801 -28.28032 -27.16606 -25.53011 -24.78894 -23.68380 -23.02148 -21.46744 -20.46226 -19.38250 -18.86176 -18.11191 -17.66564 -17.27611 -16.78673 -16.76536 -16.47262 -16.05342 -15.93193 -15.60553 -15.31823 -14.88465 -14.54495 -14.37004 -14.25405 -14.20211 -13.75451 -13.65031 -13.36258 -13.13639 -12.95848 -12.86100 -12.66144 -12.43829 -12.28648 -12.19275 -12.10151 -12.02558 -11.76031 -11.55620 -11.51190 -11.42014 -10.63234 -10.49293 -9.97480 -9.58155 -9.31407 -8.64009 -7.86663 -5.26027 -0.26097 0.03404 1.00320 1.39090 1.44571 1.51718 1.78267 2.10503 2.22229 2.50333 2.56443 3.25808 3.47859 3.63116 3.73070 3.79294 4.08421 4.10117 4.21970 4.27363 4.29691 4.37542 4.42315 4.47567 4.54918 4.58311 4.69636 4.71268 4.80125 4.89868 4.95123 4.97229 5.09106 5.13992 5.22803 5.27415 5.39875 5.52642 5.57833 5.68961 5.81985 6.20959 6.40527 6.51646 7.18907 7.23076 7.95906 8.33144 9.18308 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010286 B = 0.005348 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2721.475591 B = 5234.266628 C = 6631.078033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.317 6.317 3 C 0.167 3.833 4 C -0.161 4.161 5 C -0.083 4.083 6 C -0.185 4.185 7 C 0.554 3.446 8 O -0.565 6.565 9 N -0.580 5.580 10 C 0.129 3.871 11 C -0.155 4.155 12 C 0.158 3.842 13 N -0.601 5.601 14 C -0.256 4.256 15 H 0.050 0.950 16 C -0.034 4.034 17 N -0.922 5.922 18 Si 0.938 3.062 19 H -0.283 1.283 20 H -0.292 1.292 21 H -0.287 1.287 22 C 0.150 3.850 23 C 0.060 3.940 24 C 0.040 3.960 25 Cl -0.046 7.046 26 C -0.211 4.211 27 H 0.073 0.927 28 H 0.127 0.873 29 H 0.065 0.935 30 H 0.154 0.846 31 H 0.193 0.807 32 H 0.101 0.899 33 H 0.072 0.928 34 H 0.025 0.975 35 H 0.086 0.914 36 H 0.037 0.963 37 H 0.062 0.938 38 H 0.251 0.749 39 H 0.068 0.932 40 H 0.037 0.963 41 H 0.106 0.894 42 H 0.096 0.904 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.940 -2.155 -11.304 16.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.230 6.230 3 C 0.119 3.881 4 C -0.180 4.180 5 C -0.100 4.100 6 C -0.189 4.189 7 C 0.344 3.656 8 O -0.446 6.446 9 N -0.310 5.310 10 C 0.008 3.992 11 C -0.196 4.196 12 C 0.031 3.969 13 N -0.323 5.323 14 C -0.387 4.387 15 H 0.067 0.933 16 C -0.230 4.230 17 N -0.568 5.568 18 Si 0.768 3.232 19 H -0.208 1.208 20 H -0.219 1.219 21 H -0.214 1.214 22 C 0.025 3.975 23 C -0.065 4.065 24 C 0.012 3.988 25 Cl -0.016 7.016 26 C -0.230 4.230 27 H 0.091 0.909 28 H 0.145 0.855 29 H 0.083 0.917 30 H 0.172 0.828 31 H 0.209 0.791 32 H 0.119 0.881 33 H 0.091 0.909 34 H 0.044 0.956 35 H 0.104 0.896 36 H 0.055 0.945 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.086 0.914 40 H 0.055 0.945 41 H 0.123 0.877 42 H 0.114 0.886 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -12.206 -1.842 -11.060 16.574 hybrid contribution -0.336 0.075 1.577 1.614 sum -12.542 -1.767 -9.483 15.823 Atomic orbital electron populations 1.23518 0.75799 1.06314 1.02729 1.86086 1.24050 1.25409 1.87445 1.19163 0.92085 0.84408 0.92400 1.20756 0.91849 0.99148 1.06227 1.23256 1.04405 0.90291 0.92084 1.19749 0.92677 0.94454 1.12036 1.18268 0.81829 0.87967 0.77553 1.90731 1.66535 1.40537 1.46754 1.47313 1.13695 1.08300 1.61664 1.20836 0.95997 0.82832 0.99499 1.21788 0.98632 1.00813 0.98349 1.20461 0.93294 0.86266 0.96846 1.43781 1.67883 1.18089 1.02574 1.19307 1.44046 0.91428 0.83899 0.93261 1.25337 1.01408 0.96245 1.00003 1.70091 1.52713 0.98019 1.36010 0.85645 0.77372 0.77213 0.82922 1.20793 1.21872 1.21368 1.22106 0.94533 0.89521 0.91317 1.22790 0.96665 0.88679 0.98387 1.20802 0.90328 0.88757 0.98922 1.98381 1.70895 1.36105 1.96240 1.21173 1.01932 0.89248 1.10679 0.90883 0.85463 0.91677 0.82796 0.79108 0.88112 0.90921 0.95574 0.89578 0.94465 0.92018 0.93898 0.91442 0.94544 0.87684 0.88622 0.81382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.24 16 2 O -0.32 -7.07 10.48 -90.38 -0.95 -8.02 16 3 C 0.17 4.41 6.69 22.63 0.15 4.56 16 4 C -0.16 -4.75 9.97 22.33 0.22 -4.53 16 5 C -0.08 -2.81 7.20 22.50 0.16 -2.65 16 6 C -0.19 -6.70 5.64 -20.06 -0.11 -6.81 16 7 C 0.55 22.17 7.35 86.70 0.64 22.81 16 8 O -0.56 -25.32 14.07 -4.00 -0.06 -25.37 16 9 N -0.58 -20.62 2.45 -833.97 -2.04 -22.66 16 10 C 0.13 4.06 5.70 84.40 0.48 4.54 16 11 C -0.15 -5.40 5.66 29.21 0.17 -5.23 16 12 C 0.16 6.06 5.63 87.21 0.49 6.56 16 13 N -0.60 -28.09 2.54 -698.09 -1.77 -29.86 16 14 C -0.26 -13.89 9.26 84.03 0.78 -13.11 16 15 H 0.05 2.78 7.89 -2.91 -0.02 2.75 16 16 C -0.03 -1.84 4.88 84.86 0.41 -1.43 16 17 N -0.92 -50.64 11.05 21.65 0.24 -50.40 16 18 Si 0.94 45.58 29.59 68.60 2.03 47.61 16 19 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 20 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 21 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 22 C 0.15 6.33 4.43 86.56 0.38 6.71 16 23 C 0.06 1.93 4.71 87.55 0.41 2.34 16 24 C 0.04 1.29 6.33 22.58 0.14 1.43 16 25 Cl -0.05 -1.46 26.37 -2.72 -0.07 -1.53 16 26 C -0.21 -5.49 8.80 22.35 0.20 -5.29 16 27 H 0.07 0.75 7.66 -2.39 -0.02 0.73 16 28 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.06 0.78 7.64 -2.39 -0.02 0.76 16 30 H 0.15 4.08 8.06 -2.91 -0.02 4.06 16 31 H 0.19 6.87 1.57 -2.91 0.00 6.86 16 32 H 0.10 2.42 8.05 -2.39 -0.02 2.40 16 33 H 0.07 2.39 7.22 -2.38 -0.02 2.37 16 34 H 0.03 1.13 7.91 -2.39 -0.02 1.11 16 35 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.04 1.48 8.02 -2.39 -0.02 1.46 16 37 H 0.06 2.03 7.59 -2.38 -0.02 2.01 16 38 H 0.25 13.47 8.31 -92.71 -0.77 12.70 16 39 H 0.07 3.20 4.31 -2.39 -0.01 3.19 16 40 H 0.04 1.62 8.00 -2.39 -0.02 1.60 16 41 H 0.11 3.10 4.50 -2.39 -0.01 3.09 16 42 H 0.10 2.55 7.72 -2.39 -0.02 2.54 16 43 H 0.17 3.26 6.27 -2.91 -0.02 3.24 16 Total: -1.00 -68.45 346.91 4.07 -64.37 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 1.05 Total: 14.72 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: 5.64 Total: 11.14 kcal Atomic # 7 Polarization: -99.35 SS G_CDS: -3.57 Total: -102.92 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -1.00 Total: -33.39 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -0.07 Total: -1.53 kcal Total: -68.45 4.07 -64.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982251879.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.669 kcal (2) G-P(sol) polarization free energy of solvation -68.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds