Wall clock time and date at job start Tue Mar 31 2020 21:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35673 * 117.00345 * 2 1 4 4 C 1.38701 * 120.13290 * 0.22990 * 3 2 1 5 5 C 1.38059 * 120.09541 * 180.27652 * 4 3 2 6 6 C 1.38650 * 120.37732 * 359.74892 * 5 4 3 7 7 Cl 1.73600 * 119.86146 * 180.02562 * 6 5 4 8 8 C 1.37890 * 120.27499 * 359.97438 * 6 5 4 9 9 C 1.39713 * 119.89147 * 0.02562 * 8 6 5 10 10 C 1.47539 * 120.18667 * 179.97438 * 9 8 6 11 11 O 1.21590 * 120.00347 * 204.89854 * 10 9 8 12 12 N 1.34782 * 119.99528 * 24.89684 * 10 9 8 13 13 C 1.48213 * 119.96764 * 170.97685 * 12 10 9 14 14 C 1.47137 * 110.34297 * 102.47004 * 13 12 10 15 15 C 1.53793 * 111.84292 * 58.29649 * 14 13 12 16 16 N 1.43469 * 107.95809 * 281.66809 * 15 14 13 17 17 C 1.36934 * 118.93797 * 273.60756 * 16 15 14 18 18 H 1.07996 * 120.00018 * 26.33303 * 17 16 15 19 19 C 1.38815 * 120.00014 * 206.33374 * 17 16 15 20 20 N 1.31616 * 119.99749 * 15.89245 * 19 17 16 21 21 Si 1.86801 * 120.00128 * 195.89517 * 19 17 16 22 22 H 1.48493 * 109.47284 * 265.01363 * 21 19 17 23 23 H 1.48498 * 109.47056 * 145.00919 * 21 19 17 24 24 H 1.48503 * 109.47111 * 25.01263 * 21 19 17 25 25 C 1.48855 * 122.11900 * 93.89205 * 16 15 14 26 26 C 1.43621 * 119.97388 * 350.95507 * 12 10 9 27 27 H 1.09008 * 109.46798 * 300.00053 * 1 2 3 28 28 H 1.08997 * 109.47316 * 59.99761 * 1 2 3 29 29 H 1.09003 * 109.47239 * 180.02562 * 1 2 3 30 30 H 1.07993 * 119.95788 * 0.02625 * 4 3 2 31 31 H 1.08001 * 119.81170 * 179.71962 * 5 4 3 32 32 H 1.07990 * 120.05349 * 180.02562 * 8 6 5 33 33 H 1.09005 * 109.32333 * 342.20192 * 13 12 10 34 34 H 1.08998 * 109.18156 * 222.64507 * 13 12 10 35 35 H 1.09006 * 109.00762 * 297.68651 * 14 13 12 36 36 H 1.09001 * 109.00870 * 178.90812 * 14 13 12 37 37 H 1.08998 * 109.76856 * 162.05237 * 15 14 13 38 38 H 1.08998 * 109.80565 * 41.30789 * 15 14 13 39 39 H 0.97000 * 120.00077 * 180.02562 * 20 19 17 40 40 H 1.08997 * 109.48408 * 80.34413 * 25 16 15 41 41 H 1.09005 * 109.47988 * 200.38088 * 25 16 15 42 42 H 1.08998 * 108.87092 * 31.46193 * 26 12 10 43 43 H 1.08995 * 108.87407 * 150.00433 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 1.2924 2.3738 0.0048 5 6 1.9200 3.6035 -0.0010 6 6 3.3041 3.6842 -0.0063 7 17 4.0794 5.2375 -0.0129 8 6 4.0674 2.5359 -0.0054 9 6 3.4441 1.2855 0.0004 10 6 4.2545 0.0526 0.0008 11 8 3.7887 -0.9813 -0.4379 12 7 5.5113 0.0725 0.4875 13 6 6.2531 -1.1970 0.6739 14 6 7.2276 -1.3843 -0.4124 15 6 8.2302 -0.2206 -0.4887 16 7 7.5802 0.8815 -1.1377 17 6 7.5997 0.9503 -2.5052 18 1 7.6950 0.0473 -3.0899 19 6 7.4969 2.1806 -3.1398 20 7 7.6940 3.2902 -2.4600 21 14 7.0787 2.2613 -4.9586 22 1 8.3312 2.3555 -5.7508 23 1 6.2364 3.4560 -5.2203 24 1 6.3360 1.0366 -5.3506 25 6 6.8906 1.9559 -0.3722 26 6 6.1305 1.3237 0.8245 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 0.2138 2.3191 0.0090 31 1 1.3294 4.5078 -0.0018 32 1 5.1452 2.6029 -0.0092 33 1 5.5493 -2.0293 0.6747 34 1 6.7784 -1.1679 1.6286 35 1 6.6935 -1.4555 -1.3600 36 1 7.7734 -2.3126 -0.2437 37 1 9.1042 -0.5242 -1.0649 38 1 8.5347 0.0711 0.5164 39 1 7.6219 4.1499 -2.9033 40 1 7.6273 2.6693 -0.0030 41 1 6.1821 2.4685 -1.0229 42 1 5.3610 2.0188 1.1604 43 1 6.8367 1.1598 1.6384 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989608321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:31 Heat of formation + Delta-G solvation = 10.865848 kcal Electronic energy + Delta-G solvation = -28922.572495 eV Core-core repulsion = 24996.435869 eV Total energy + Delta-G solvation = -3926.136626 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.08916 -40.51079 -38.78057 -38.47483 -37.12790 -35.96360 -34.84627 -33.01483 -31.93996 -31.07196 -29.47134 -28.21754 -27.25698 -25.54462 -25.06201 -23.67488 -22.84137 -21.48872 -20.61713 -19.01815 -18.88126 -18.07113 -17.76900 -17.27209 -16.89551 -16.68930 -16.51097 -16.24049 -15.91719 -15.48837 -15.26617 -14.92433 -14.49977 -14.41435 -14.29395 -14.03007 -13.83940 -13.51060 -13.41294 -13.14562 -12.95727 -12.79686 -12.63897 -12.43772 -12.32932 -12.15064 -12.04419 -11.94501 -11.76613 -11.60504 -11.55513 -11.44233 -10.74623 -10.51827 -10.11416 -9.58269 -9.17600 -8.62832 -7.85796 -5.27995 -0.26291 0.10870 1.17256 1.38417 1.42440 1.50400 1.75920 2.11042 2.25560 2.49669 2.57965 3.26484 3.42603 3.61550 3.73890 3.88309 4.04584 4.10080 4.18650 4.25503 4.31853 4.35109 4.39305 4.46111 4.55249 4.64040 4.65767 4.70678 4.74949 4.81431 4.92507 4.99988 5.06219 5.10675 5.21142 5.26130 5.41314 5.50724 5.55768 5.67730 5.79693 6.29377 6.40738 6.51125 7.18356 7.22223 7.94924 8.33646 9.18375 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.009339 B = 0.005989 C = 0.004721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2997.546391 B = 4673.828877 C = 5929.589394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.315 6.315 3 C 0.174 3.826 4 C -0.199 4.199 5 C -0.037 4.037 6 C -0.094 4.094 7 Cl -0.064 7.064 8 C -0.092 4.092 9 C -0.185 4.185 10 C 0.558 3.442 11 O -0.570 6.570 12 N -0.582 5.582 13 C 0.129 3.871 14 C -0.155 4.155 15 C 0.158 3.842 16 N -0.601 5.601 17 C -0.260 4.260 18 H 0.049 0.951 19 C -0.033 4.033 20 N -0.919 5.919 21 Si 0.940 3.060 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.287 1.287 25 C 0.157 3.843 26 C 0.055 3.945 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.113 0.887 30 H 0.182 0.818 31 H 0.173 0.827 32 H 0.187 0.813 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.024 0.976 36 H 0.088 0.912 37 H 0.038 0.962 38 H 0.060 0.940 39 H 0.251 0.749 40 H 0.033 0.967 41 H 0.060 0.940 42 H 0.106 0.894 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.271 0.016 11.580 17.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.227 6.227 3 C 0.125 3.875 4 C -0.218 4.218 5 C -0.055 4.055 6 C -0.121 4.121 7 Cl -0.035 7.035 8 C -0.110 4.110 9 C -0.189 4.189 10 C 0.349 3.651 11 O -0.451 6.451 12 N -0.312 5.312 13 C 0.008 3.992 14 C -0.196 4.196 15 C 0.031 3.969 16 N -0.323 5.323 17 C -0.391 4.391 18 H 0.067 0.933 19 C -0.230 4.230 20 N -0.565 5.565 21 Si 0.770 3.230 22 H -0.209 1.209 23 H -0.215 1.215 24 H -0.213 1.213 25 C 0.032 3.968 26 C -0.069 4.069 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.131 0.869 30 H 0.199 0.801 31 H 0.190 0.810 32 H 0.203 0.797 33 H 0.090 0.910 34 H 0.119 0.881 35 H 0.043 0.957 36 H 0.107 0.893 37 H 0.057 0.943 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.051 0.949 41 H 0.078 0.922 42 H 0.123 0.877 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.336 -0.456 11.341 17.512 hybrid contribution 0.045 0.402 -1.568 1.619 sum -13.290 -0.054 9.773 16.497 Atomic orbital electron populations 1.23520 0.75962 1.05814 1.03077 1.86295 1.23814 1.25942 1.86679 1.19260 0.90461 0.86096 0.91637 1.21483 1.01987 0.89758 1.08546 1.21391 0.91550 0.99455 0.93147 1.20843 0.93771 0.86772 1.10705 1.98374 1.81445 1.26507 1.97194 1.23020 1.04469 0.89820 0.93722 1.19289 0.91963 0.93445 1.14204 1.18254 0.81906 0.87863 0.77117 1.90696 1.73035 1.34184 1.47189 1.47332 1.12640 1.08178 1.63020 1.20726 0.94073 0.85024 0.99347 1.21685 0.98765 1.00878 0.98298 1.20472 0.92852 0.87139 0.96456 1.43759 1.61115 1.25232 1.02178 1.19243 1.44710 0.91455 0.83706 0.93339 1.25423 1.01592 0.95757 1.00229 1.70079 1.53406 0.96824 1.36159 0.85678 0.77838 0.76670 0.82857 1.20877 1.21456 1.21266 1.22032 0.94122 0.89482 0.91154 1.22930 0.98738 0.86373 0.98892 0.90059 0.91052 0.86898 0.80124 0.80972 0.79703 0.91001 0.88069 0.95670 0.89330 0.94342 0.92139 0.93980 0.94869 0.92232 0.87704 0.88744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.81 113.37 1.11 1.29 16 2 O -0.32 -9.77 8.86 -70.56 -0.63 -10.39 16 3 C 0.17 5.42 6.67 22.84 0.15 5.57 16 4 C -0.20 -4.43 9.03 22.34 0.20 -4.23 16 5 C -0.04 -0.84 9.81 22.33 0.22 -0.62 16 6 C -0.09 -2.80 6.31 22.29 0.14 -2.66 16 7 Cl -0.06 -1.88 28.94 -2.72 -0.08 -1.96 16 8 C -0.09 -3.26 7.02 22.54 0.16 -3.10 16 9 C -0.18 -6.88 5.69 -20.01 -0.11 -6.99 16 10 C 0.56 23.57 7.43 86.70 0.64 24.21 16 11 O -0.57 -27.30 15.09 15.34 0.23 -27.07 16 12 N -0.58 -21.91 2.46 -834.30 -2.05 -23.96 16 13 C 0.13 4.27 5.65 84.23 0.48 4.74 16 14 C -0.16 -5.63 5.64 29.04 0.16 -5.47 16 15 C 0.16 6.29 5.63 87.21 0.49 6.78 16 16 N -0.60 -29.22 2.53 -697.39 -1.76 -30.98 16 17 C -0.26 -14.54 9.25 84.03 0.78 -13.76 16 18 H 0.05 2.80 7.88 -2.91 -0.02 2.77 16 19 C -0.03 -1.88 4.90 84.86 0.42 -1.46 16 20 N -0.92 -52.18 11.06 21.65 0.24 -51.94 16 21 Si 0.94 46.51 29.58 68.60 2.03 48.54 16 22 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 23 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 24 H -0.29 -14.38 7.11 99.48 0.71 -13.68 16 25 C 0.16 7.05 4.46 86.69 0.39 7.44 16 26 C 0.06 1.94 4.71 87.67 0.41 2.35 16 27 H 0.08 0.96 7.65 -2.38 -0.02 0.94 16 28 H 0.07 1.01 7.67 -2.39 -0.02 0.99 16 29 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.18 2.42 6.30 -2.91 -0.02 2.40 16 31 H 0.17 2.62 8.06 -2.91 -0.02 2.60 16 32 H 0.19 7.13 1.73 -2.93 -0.01 7.12 16 33 H 0.07 2.47 7.24 -2.38 -0.02 2.45 16 34 H 0.10 2.57 8.05 -2.39 -0.02 2.55 16 35 H 0.02 1.13 7.91 -2.38 -0.02 1.11 16 36 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 37 H 0.04 1.58 8.02 -2.39 -0.02 1.56 16 38 H 0.06 2.09 7.59 -2.39 -0.02 2.07 16 39 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 40 H 0.03 1.58 7.99 -2.39 -0.02 1.56 16 41 H 0.06 3.02 4.64 -2.38 -0.01 3.01 16 42 H 0.11 3.43 4.26 -2.41 -0.01 3.42 16 43 H 0.09 2.75 7.72 -2.39 -0.02 2.73 16 Total: -1.00 -73.72 349.15 4.67 -69.04 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 1.05 Total: 14.62 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: 5.64 Total: 14.09 kcal Atomic # 7 Polarization: -103.31 SS G_CDS: -3.58 Total: -106.88 kcal Atomic # 8 Polarization: -37.07 SS G_CDS: -0.39 Total: -37.47 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Atomic # 17 Polarization: -1.88 SS G_CDS: -0.08 Total: -1.96 kcal Total: -73.72 4.67 -69.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989608321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.909 kcal (2) G-P(sol) polarization free energy of solvation -73.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds