Wall clock time and date at job start Tue Mar 31 2020 21:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35713 * 117.00016 * 2 1 4 4 C 1.39061 * 119.89904 * 359.97438 * 3 2 1 5 5 C 1.37646 * 120.12443 * 179.76907 * 4 3 2 6 6 C 1.39784 * 119.92042 * 0.52774 * 5 4 3 7 7 C 1.47524 * 120.09648 * 179.74784 * 6 5 4 8 8 O 1.21592 * 120.00161 * 132.00253 * 7 6 5 9 9 N 1.34781 * 120.00063 * 311.99928 * 7 6 5 10 10 C 1.46926 * 120.63007 * 174.99680 * 9 7 6 11 11 C 1.53193 * 108.77418 * 126.36838 * 10 9 7 12 12 C 1.53039 * 109.31152 * 54.64002 * 11 10 9 13 13 N 1.46501 * 109.46361 * 178.61526 * 12 11 10 14 14 C 1.36942 * 119.99534 * 275.06872 * 13 12 11 15 15 H 1.07998 * 120.00268 * 359.97438 * 14 13 12 16 16 C 1.38809 * 119.99735 * 179.97438 * 14 13 12 17 17 N 1.31616 * 120.00082 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99930 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47245 * 89.99505 * 18 16 14 20 20 H 1.48504 * 109.47239 * 209.99595 * 18 16 14 21 21 H 1.48504 * 109.47258 * 329.99558 * 18 16 14 22 22 C 1.53043 * 109.53543 * 298.63266 * 12 11 10 23 23 C 1.46917 * 120.62972 * 354.97884 * 9 7 6 24 24 C 1.39850 * 119.80214 * 359.47355 * 6 5 4 25 25 Cl 1.73600 * 120.06225 * 180.22810 * 24 6 5 26 26 C 1.37893 * 119.87558 * 0.25431 * 24 6 5 27 27 H 1.09002 * 109.47023 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46864 * 300.00307 * 1 2 3 29 29 H 1.08999 * 109.46480 * 60.00107 * 1 2 3 30 30 H 1.08004 * 119.94107 * 0.02562 * 4 3 2 31 31 H 1.07997 * 120.04069 * 180.27869 * 5 4 3 32 32 H 1.08998 * 109.58945 * 246.15910 * 10 9 7 33 33 H 1.09002 * 109.58801 * 6.58676 * 10 9 7 34 34 H 1.09009 * 109.49492 * 174.58328 * 11 10 9 35 35 H 1.08994 * 109.49809 * 294.68139 * 11 10 9 36 36 H 1.09002 * 109.46205 * 58.64863 * 12 11 10 37 37 H 0.96996 * 120.00172 * 95.06285 * 13 12 11 38 38 H 0.97001 * 120.00137 * 180.02562 * 17 16 14 39 39 H 1.08996 * 109.49552 * 301.41270 * 22 12 11 40 40 H 1.09000 * 109.52244 * 181.33477 * 22 12 11 41 41 H 1.08998 * 109.59179 * 353.41227 * 23 9 7 42 42 H 1.09001 * 109.59005 * 113.69881 * 23 9 7 43 43 H 1.07997 * 119.96366 * 180.02562 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 1.2857 2.3741 -0.0005 5 6 1.9058 3.6030 0.0043 6 6 3.3015 3.6798 -0.0015 7 6 3.9701 4.9948 -0.0020 8 8 4.8770 5.2161 0.7771 9 7 3.5757 5.9510 -0.8661 10 6 4.1558 7.2996 -0.8062 11 6 4.6948 7.6664 -2.1924 12 6 3.5789 7.5077 -3.2276 13 7 4.0817 7.8895 -4.5497 14 6 4.0722 9.2043 -4.9323 15 1 3.6938 9.9598 -4.2596 16 6 4.5490 9.5661 -6.1847 17 7 5.0107 8.6455 -7.0043 18 14 4.5355 11.3596 -6.7069 19 1 5.8145 12.0007 -6.3090 20 1 4.3767 11.4448 -8.1810 21 1 3.4045 12.0591 -6.0459 22 6 3.1147 6.0498 -3.2602 23 6 2.5578 5.6645 -1.8860 24 6 4.0622 2.5062 -0.0009 25 17 5.7960 2.5937 -0.0020 26 6 3.4324 1.2795 0.0000 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 0.2073 2.3146 -0.0005 31 1 1.3147 4.5068 0.0084 32 1 3.3879 8.0149 -0.5116 33 1 4.9700 7.3153 -0.0817 34 1 5.0410 8.7001 -2.1863 35 1 5.5238 7.0062 -2.4468 36 1 2.7402 8.1499 -2.9589 37 1 4.4213 7.2109 -5.1539 38 1 5.3442 8.8984 -7.8793 39 1 3.9586 5.4047 -3.5047 40 1 2.3364 5.9321 -4.0143 41 1 2.3176 4.6014 -1.8742 42 1 1.6587 6.2446 -1.6781 43 1 4.0184 0.3723 0.0008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997100332.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:19 Heat of formation + Delta-G solvation = -54.122662 kcal Electronic energy + Delta-G solvation = -26907.566966 eV Core-core repulsion = 22978.612226 eV Total energy + Delta-G solvation = -3928.954739 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.78441 -40.76180 -38.96109 -38.24225 -37.35157 -36.13926 -33.89060 -32.68822 -31.93366 -31.40290 -30.69191 -28.30675 -26.68093 -25.07906 -24.33716 -23.82736 -23.33004 -21.72536 -20.44538 -19.36843 -19.04718 -18.47053 -17.66740 -17.14313 -16.74367 -16.66505 -16.15825 -16.09419 -15.57947 -15.44717 -15.38964 -15.11737 -14.80746 -14.77770 -14.44332 -14.17022 -13.78685 -13.72047 -13.39316 -13.09187 -13.07668 -12.84060 -12.79569 -12.62030 -12.23050 -12.20159 -12.16088 -11.97053 -11.93245 -11.80795 -11.67053 -11.37923 -10.92512 -10.86338 -10.01529 -9.71259 -9.36077 -9.00051 -7.92714 -5.21208 -0.22423 0.03886 0.93649 1.48046 1.49641 1.57546 1.58469 1.94969 2.30404 2.48740 2.57496 3.38891 3.41153 3.58800 3.83305 3.86792 3.90561 3.99935 4.12119 4.17901 4.20862 4.36052 4.40730 4.42265 4.47248 4.60562 4.62634 4.76802 4.80129 4.83225 4.84294 4.87638 4.98374 5.04628 5.07169 5.13719 5.30123 5.34236 5.50474 5.55252 5.60732 6.25644 6.29248 6.36136 7.07819 7.35247 8.11609 8.33942 9.30973 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.016860 B = 0.002684 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.360032 B =10430.313713 C =11039.658589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.324 6.324 3 C 0.164 3.836 4 C -0.197 4.197 5 C -0.027 4.027 6 C -0.178 4.178 7 C 0.559 3.441 8 O -0.566 6.566 9 N -0.599 5.599 10 C 0.123 3.877 11 C -0.139 4.139 12 C 0.175 3.825 13 N -0.738 5.738 14 C -0.234 4.234 15 H 0.079 0.921 16 C -0.079 4.079 17 N -0.972 5.972 18 Si 0.970 3.030 19 H -0.292 1.292 20 H -0.298 1.298 21 H -0.266 1.266 22 C -0.131 4.131 23 C 0.112 3.888 24 C 0.030 3.970 25 Cl -0.061 7.061 26 C -0.161 4.161 27 H 0.120 0.880 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.178 0.822 31 H 0.167 0.833 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.033 0.967 36 H 0.057 0.943 37 H 0.370 0.630 38 H 0.249 0.751 39 H 0.045 0.955 40 H 0.084 0.916 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.602 -17.840 17.390 28.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.237 6.237 3 C 0.117 3.883 4 C -0.215 4.215 5 C -0.045 4.045 6 C -0.182 4.182 7 C 0.348 3.652 8 O -0.445 6.445 9 N -0.331 5.331 10 C 0.000 4.000 11 C -0.180 4.180 12 C 0.067 3.933 13 N -0.377 5.377 14 C -0.366 4.366 15 H 0.097 0.903 16 C -0.271 4.271 17 N -0.623 5.623 18 Si 0.799 3.201 19 H -0.219 1.219 20 H -0.224 1.224 21 H -0.190 1.190 22 C -0.170 4.170 23 C -0.010 4.010 24 C 0.002 3.998 25 Cl -0.031 7.031 26 C -0.181 4.181 27 H 0.138 0.862 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.196 0.804 31 H 0.185 0.815 32 H 0.110 0.890 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.052 0.948 36 H 0.075 0.925 37 H 0.201 0.799 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.102 0.898 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -13.958 -17.704 17.792 28.720 hybrid contribution 1.051 0.877 -0.999 1.694 sum -12.907 -16.828 16.793 27.051 Atomic orbital electron populations 1.23535 0.75319 1.06192 1.03172 1.86058 1.24329 1.25906 1.87369 1.19057 0.91168 0.85598 0.92498 1.21619 1.02420 0.90403 1.07082 1.21351 0.90726 0.99801 0.92661 1.19634 0.95178 0.91392 1.12028 1.18401 0.82153 0.84181 0.80450 1.90776 1.30744 1.81251 1.41765 1.48113 1.41276 1.11227 1.32467 1.21563 0.99078 0.82421 0.96888 1.22461 0.99594 1.00616 0.95328 1.20426 0.93969 0.94490 0.84465 1.42680 1.75154 1.05367 1.14499 1.19635 1.32742 0.86004 0.98191 0.90320 1.25543 1.02693 1.01352 0.97477 1.69821 1.49810 1.33496 1.09182 0.85188 0.77843 0.80346 0.76701 1.21936 1.22441 1.19036 1.22097 1.01144 0.95947 0.97849 1.22098 0.90533 1.03267 0.85092 1.20674 0.85036 0.93707 1.00341 1.98414 1.09637 1.98669 1.96429 1.20210 0.92903 0.96728 1.08236 0.86214 0.90725 0.90721 0.80447 0.81515 0.89045 0.90607 0.92237 0.94827 0.92505 0.79858 0.94201 0.93612 0.89766 0.87737 0.87834 0.83080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.81 113.37 1.11 1.16 16 2 O -0.32 -4.27 10.48 -90.34 -0.95 -5.22 16 3 C 0.16 2.52 6.69 22.63 0.15 2.67 16 4 C -0.20 -2.23 9.01 22.33 0.20 -2.03 16 5 C -0.03 -0.40 7.50 22.50 0.17 -0.23 16 6 C -0.18 -4.16 4.86 -20.06 -0.10 -4.26 16 7 C 0.56 16.37 6.77 86.69 0.59 16.96 16 8 O -0.57 -20.74 15.18 -4.00 -0.06 -20.80 16 9 N -0.60 -15.91 2.97 -822.68 -2.44 -18.36 16 10 C 0.12 3.57 6.44 86.36 0.56 4.12 16 11 C -0.14 -4.99 5.66 30.67 0.17 -4.81 16 12 C 0.17 6.47 2.73 45.02 0.12 6.59 16 13 N -0.74 -36.41 5.12 -322.81 -1.65 -38.06 16 14 C -0.23 -12.69 9.93 84.03 0.83 -11.85 16 15 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 16 C -0.08 -4.49 5.50 84.86 0.47 -4.03 16 17 N -0.97 -59.66 13.06 21.65 0.28 -59.38 16 18 Si 0.97 45.88 29.55 68.60 2.03 47.91 16 19 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 20 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 22 C -0.13 -3.89 5.55 30.67 0.17 -3.72 16 23 C 0.11 2.38 5.22 86.37 0.45 2.83 16 24 C 0.03 0.74 6.33 22.58 0.14 0.88 16 25 Cl -0.06 -1.73 27.11 -2.72 -0.07 -1.80 16 26 C -0.16 -3.17 9.75 22.35 0.22 -2.95 16 27 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 28 H 0.07 0.12 7.65 -2.39 -0.02 0.10 16 29 H 0.07 0.15 7.65 -2.39 -0.02 0.13 16 30 H 0.18 0.68 6.27 -2.91 -0.02 0.66 16 31 H 0.17 1.62 7.27 -2.91 -0.02 1.60 16 32 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.08 2.40 6.99 -2.39 -0.02 2.38 16 34 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 35 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.06 2.03 8.08 -2.39 -0.02 2.01 16 37 H 0.37 19.99 7.80 -92.71 -0.72 19.27 16 38 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 39 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 41 H 0.10 1.83 5.07 -2.39 -0.01 1.82 16 42 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -74.52 364.52 2.71 -71.81 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: 0.32 Total: 22.56 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: 5.26 Total: 1.34 kcal Atomic # 7 Polarization: -111.98 SS G_CDS: -3.82 Total: -115.79 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -1.01 Total: -26.02 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Atomic # 17 Polarization: -1.73 SS G_CDS: -0.07 Total: -1.80 kcal Total: -74.52 2.71 -71.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997100332.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.685 kcal (2) G-P(sol) polarization free energy of solvation -74.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds