Wall clock time and date at job start Tue Mar 31 2020 21:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35911 * 116.99947 * 2 1 4 4 C 1.38821 * 119.97749 * 0.02562 * 3 2 1 5 5 C 1.38358 * 120.22711 * 179.97438 * 4 3 2 6 6 Cl 1.73603 * 119.91184 * 179.97438 * 5 4 3 7 7 C 1.38136 * 120.17730 * 0.02562 * 5 4 3 8 8 C 1.39546 * 119.95263 * 359.97438 * 7 5 4 9 9 C 1.47862 * 120.11133 * 179.97438 * 8 7 5 10 10 O 1.21547 * 119.99954 * 41.74441 * 9 8 7 11 11 N 1.34780 * 119.99809 * 221.74365 * 9 8 7 12 12 C 1.46925 * 120.63037 * 5.57994 * 11 9 8 13 13 C 1.53618 * 108.54429 * 126.36685 * 12 11 9 14 14 C 1.53043 * 109.24408 * 54.85304 * 13 12 11 15 15 N 1.46499 * 109.46358 * 178.49301 * 14 13 12 16 16 C 1.36942 * 119.99793 * 275.06792 * 15 14 13 17 17 H 1.08001 * 120.00153 * 0.02562 * 16 15 14 18 18 C 1.38807 * 120.00055 * 179.97438 * 16 15 14 19 19 N 1.31619 * 120.00255 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00091 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47403 * 89.99571 * 20 18 16 22 22 H 1.48495 * 109.47387 * 210.00134 * 20 18 16 23 23 H 1.48509 * 109.46861 * 329.99725 * 20 18 16 24 24 C 1.53041 * 109.53507 * 298.51098 * 14 13 12 25 25 C 1.46930 * 120.62701 * 185.85246 * 11 9 8 26 26 C 1.38468 * 119.97498 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47025 * 299.99457 * 1 2 3 28 28 H 1.09003 * 109.47438 * 59.99619 * 1 2 3 29 29 H 1.08998 * 109.47215 * 179.97438 * 1 2 3 30 30 H 1.07994 * 119.88730 * 0.24822 * 4 3 2 31 31 H 1.07996 * 120.02104 * 180.02562 * 7 5 4 32 32 H 1.09010 * 109.58144 * 246.19665 * 12 11 9 33 33 H 1.09001 * 109.58881 * 6.62003 * 12 11 9 34 34 H 1.09000 * 109.63937 * 294.86152 * 13 12 11 35 35 H 1.08999 * 109.43144 * 174.71847 * 13 12 11 36 36 H 1.08999 * 109.44943 * 58.52163 * 14 13 12 37 37 H 0.96995 * 120.00150 * 95.06102 * 15 14 13 38 38 H 0.96993 * 120.00399 * 180.02562 * 19 18 16 39 39 H 1.08992 * 109.49953 * 301.40906 * 24 14 13 40 40 H 1.09008 * 109.52176 * 181.33113 * 24 14 13 41 41 H 1.08996 * 109.58621 * 353.37437 * 25 11 9 42 42 H 1.09002 * 109.58022 * 113.65658 * 25 11 9 43 43 H 1.08001 * 120.08938 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2894 2.3749 0.0005 5 6 1.9122 3.6104 0.0011 6 17 0.9581 5.0608 0.0011 7 6 3.2911 3.6930 0.0005 8 6 4.0588 2.5278 0.0000 9 6 5.5350 2.6121 -0.0011 10 8 6.0975 3.4309 0.6992 11 7 6.2569 1.7809 -0.7788 12 6 5.5915 0.8703 -1.7205 13 6 6.1906 1.0894 -3.1180 14 6 7.7100 0.9202 -3.0477 15 7 8.2827 1.0927 -4.3850 16 6 8.3349 0.0320 -5.2495 17 1 7.9534 -0.9316 -4.9457 18 6 8.8771 0.1956 -6.5168 19 7 8.9268 -0.8238 -7.3480 20 14 9.5363 1.8624 -7.0427 21 1 10.9743 1.9611 -6.6858 22 1 9.3791 2.0160 -8.5113 23 1 8.7793 2.9353 -6.3490 24 6 8.2986 1.9695 -2.1018 25 6 7.7238 1.7642 -0.6967 26 6 3.4288 1.2829 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 0.2111 2.3159 0.0050 31 1 3.7745 4.6587 0.0014 32 1 5.7542 -0.1613 -1.4078 33 1 4.5228 1.0836 -1.7419 34 1 5.9522 2.0948 -3.4652 35 1 5.7746 0.3570 -3.8097 36 1 7.9474 -0.0769 -2.6768 37 1 8.6249 1.9583 -4.6581 38 1 9.3060 -0.7096 -8.2334 39 1 8.0404 2.9665 -2.4584 40 1 9.3831 1.8639 -2.0701 41 1 8.0623 2.5676 -0.0425 42 1 8.0565 0.8051 -0.2999 43 1 4.0180 0.3777 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997117819.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:22 Heat of formation + Delta-G solvation = -30.228760 kcal Electronic energy + Delta-G solvation = -26867.060267 eV Core-core repulsion = 22939.141645 eV Total energy + Delta-G solvation = -3927.918622 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.02584 -39.89030 -38.02611 -37.40251 -36.58780 -34.72268 -32.46009 -31.63211 -30.75379 -30.52351 -29.75412 -27.76407 -25.53819 -23.75767 -23.44025 -22.68922 -22.02638 -20.57644 -19.64299 -18.26231 -17.51801 -17.22829 -16.67980 -16.53522 -16.22461 -15.86557 -15.27937 -14.88028 -14.85861 -14.25048 -14.16829 -13.95269 -13.72516 -13.52946 -13.38728 -12.97537 -12.79011 -12.52954 -12.40303 -12.30018 -12.12437 -11.90261 -11.67134 -11.40305 -11.23448 -11.07091 -11.00824 -10.91505 -10.60867 -10.28524 -10.02194 -9.92031 -9.62070 -9.29125 -8.96147 -8.70433 -8.63359 -7.31590 -5.80713 -3.16696 0.40315 0.81340 1.63513 2.46138 2.74963 2.89916 3.29797 3.35694 3.39044 3.43811 4.13987 4.40376 4.56236 4.58598 4.63717 4.72778 4.73301 4.80296 4.99819 5.03713 5.06045 5.13763 5.21253 5.29442 5.44287 5.52791 5.57924 5.60827 5.67742 5.78289 5.82695 5.88239 5.98323 6.05644 6.12345 6.23946 6.33915 6.48356 6.75386 6.82347 6.90162 7.31582 7.94731 8.00511 8.38403 9.16560 9.89409 10.09005 11.37480 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013329 B = 0.002783 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.244019 B =10057.450098 C =10443.550713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.307 6.307 3 C 0.137 3.863 4 C -0.183 4.183 5 C -0.001 4.001 6 Cl -0.059 7.059 7 C -0.096 4.096 8 C -0.070 4.070 9 C 0.561 3.439 10 O -0.536 6.536 11 N -0.597 5.597 12 C 0.096 3.904 13 C -0.151 4.151 14 C 0.183 3.817 15 N -0.748 5.748 16 C -0.245 4.245 17 H 0.091 0.909 18 C 0.005 3.995 19 N -0.933 5.933 20 Si 0.884 3.116 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.277 1.277 24 C -0.143 4.143 25 C 0.117 3.883 26 C -0.116 4.116 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.105 0.895 30 H 0.143 0.857 31 H 0.144 0.856 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.058 0.942 37 H 0.361 0.639 38 H 0.260 0.740 39 H 0.063 0.937 40 H 0.078 0.922 41 H 0.091 0.909 42 H 0.072 0.928 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.104 5.381 18.196 26.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.220 6.220 3 C 0.091 3.909 4 C -0.203 4.203 5 C -0.027 4.027 6 Cl -0.030 7.030 7 C -0.116 4.116 8 C -0.074 4.074 9 C 0.349 3.651 10 O -0.414 6.414 11 N -0.329 5.329 12 C -0.027 4.027 13 C -0.192 4.192 14 C 0.073 3.927 15 N -0.390 5.390 16 C -0.374 4.374 17 H 0.109 0.891 18 C -0.190 4.190 19 N -0.581 5.581 20 Si 0.714 3.286 21 H -0.211 1.211 22 H -0.218 1.218 23 H -0.204 1.204 24 C -0.182 4.182 25 C -0.006 4.006 26 C -0.135 4.135 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.123 0.877 30 H 0.161 0.839 31 H 0.162 0.838 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.076 0.924 37 H 0.194 0.806 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.109 0.891 42 H 0.090 0.910 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -17.786 5.494 18.424 26.191 hybrid contribution -0.009 1.365 -0.715 1.541 sum -17.796 6.859 17.709 26.026 Atomic orbital electron populations 1.23159 0.77794 1.04561 1.01611 1.86143 1.21828 1.25657 1.88412 1.18622 0.91727 0.84200 0.96354 1.21225 1.01003 0.90540 1.07535 1.20447 0.91501 0.87639 1.03163 1.98390 1.71683 1.36185 1.96777 1.20956 0.91100 0.99137 1.00378 1.19596 0.93607 0.92740 1.01444 1.18083 0.86074 0.80758 0.80211 1.90787 1.71827 1.36250 1.42506 1.48093 1.07460 1.38633 1.38686 1.22330 0.97485 0.93073 0.89796 1.22724 0.99620 1.02621 0.94197 1.20154 0.90238 0.96712 0.85561 1.42800 1.73563 1.10414 1.12221 1.19062 1.34079 0.90714 0.93582 0.89148 1.24668 1.01065 0.96832 0.96478 1.69695 1.50978 1.29542 1.07880 0.86565 0.79175 0.85056 0.77802 1.21061 1.21768 1.20354 1.22249 1.01014 1.00583 0.94340 1.21665 0.77915 1.02859 0.98125 1.20765 0.91764 0.98161 1.02816 0.92406 0.92230 0.87692 0.83940 0.83788 0.90824 0.89519 0.92220 0.90040 0.92406 0.80630 0.93032 0.91836 0.90295 0.89068 0.90956 0.83372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 101.05 0.99 1.11 16 2 O -0.31 -2.70 10.49 -19.46 -0.20 -2.90 16 3 C 0.14 1.30 6.68 -39.28 -0.26 1.04 16 4 C -0.18 -1.60 8.81 -39.32 -0.35 -1.95 16 5 C 0.00 -0.01 6.31 -39.57 -0.25 -0.26 16 6 Cl -0.06 -0.54 28.95 -51.86 -1.50 -2.04 16 7 C -0.10 -1.08 9.43 -39.13 -0.37 -1.45 16 8 C -0.07 -0.83 5.07 -104.99 -0.53 -1.37 16 9 C 0.56 7.85 7.30 -12.32 -0.09 7.76 16 10 O -0.54 -9.00 16.37 5.32 0.09 -8.92 16 11 N -0.60 -7.84 2.97 -173.61 -0.51 -8.36 16 12 C 0.10 1.18 4.96 -3.49 -0.02 1.17 16 13 C -0.15 -2.39 5.67 -26.39 -0.15 -2.54 16 14 C 0.18 3.25 2.73 -67.89 -0.19 3.06 16 15 N -0.75 -16.95 4.93 -53.38 -0.26 -17.21 16 16 C -0.24 -6.64 10.41 -15.06 -0.16 -6.80 16 17 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 18 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 19 N -0.93 -28.80 13.97 55.49 0.78 -28.02 16 20 Si 0.88 21.84 27.74 -169.99 -4.71 17.13 16 21 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 23 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 24 C -0.14 -2.14 5.55 -26.61 -0.15 -2.28 16 25 C 0.12 1.52 6.44 -3.71 -0.02 1.50 16 26 C -0.12 -1.20 7.33 -39.02 -0.29 -1.49 16 27 H 0.06 0.23 7.65 -51.93 -0.40 -0.17 16 28 H 0.06 0.25 7.66 -51.93 -0.40 -0.14 16 29 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.14 0.92 6.28 -52.49 -0.33 0.59 16 31 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 32 H 0.07 0.82 8.14 -51.92 -0.42 0.39 16 33 H 0.09 0.98 4.80 -51.93 -0.25 0.73 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 36 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 37 H 0.36 8.19 5.66 -40.82 -0.23 7.96 16 38 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.08 1.15 8.14 -51.92 -0.42 0.73 16 41 H 0.09 1.22 7.00 -51.93 -0.36 0.85 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.15 1.40 6.73 -52.49 -0.35 1.05 16 LS Contribution 363.42 15.07 5.48 5.48 Total: -1.00 -32.62 363.42 -8.49 -41.12 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -5.71 Total: 6.15 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -1.92 Total: -2.43 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: 0.00 Total: -53.59 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: -0.12 Total: -11.82 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.71 Total: 17.13 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.50 Total: -2.04 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.62 -8.49 -41.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997117819.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.888 kcal (2) G-P(sol) polarization free energy of solvation -32.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds