Wall clock time and date at job start Tue Mar 31 2020 21:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35668 * 116.99885 * 2 1 4 4 C 1.38694 * 120.13961 * 359.97438 * 3 2 1 5 5 C 1.38055 * 120.10015 * 179.97438 * 4 3 2 6 6 C 1.38651 * 120.37939 * 0.02562 * 5 4 3 7 7 Cl 1.73599 * 119.86470 * 180.02562 * 6 5 4 8 8 C 1.37886 * 120.26791 * 359.78215 * 6 5 4 9 9 C 1.39717 * 119.89799 * 0.44804 * 8 6 5 10 10 C 1.47535 * 120.18517 * 179.80925 * 9 8 6 11 11 O 1.21589 * 120.00291 * 234.42074 * 10 9 8 12 12 N 1.34777 * 119.99860 * 54.42877 * 10 9 8 13 13 C 1.46929 * 120.62982 * 355.55281 * 12 10 9 14 14 C 1.53627 * 108.53922 * 126.37372 * 13 12 10 15 15 C 1.53038 * 109.24273 * 54.85598 * 14 13 12 16 16 N 1.46502 * 109.45895 * 178.48799 * 15 14 13 17 17 C 1.36936 * 120.00361 * 275.06956 * 16 15 14 18 18 H 1.08006 * 119.99757 * 359.97438 * 17 16 15 19 19 C 1.38806 * 120.00225 * 179.97438 * 17 16 15 20 20 N 1.31625 * 120.00134 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99991 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47077 * 90.00361 * 21 19 17 23 23 H 1.48505 * 109.47118 * 210.00113 * 21 19 17 24 24 H 1.48496 * 109.47169 * 329.99842 * 21 19 17 25 25 C 1.53039 * 109.53730 * 298.50764 * 15 14 13 26 26 C 1.46922 * 120.62943 * 175.83691 * 12 10 9 27 27 H 1.09004 * 109.47085 * 300.00288 * 1 2 3 28 28 H 1.09000 * 109.47216 * 60.00236 * 1 2 3 29 29 H 1.08998 * 109.47041 * 180.02562 * 1 2 3 30 30 H 1.08000 * 119.95214 * 0.02562 * 4 3 2 31 31 H 1.07999 * 119.81468 * 180.02562 * 5 4 3 32 32 H 1.08005 * 120.05133 * 180.23220 * 8 6 5 33 33 H 1.08997 * 109.58815 * 246.20314 * 13 12 10 34 34 H 1.08999 * 109.58697 * 6.63014 * 13 12 10 35 35 H 1.08997 * 109.63531 * 294.86095 * 14 13 12 36 36 H 1.09000 * 109.43119 * 174.72527 * 14 13 12 37 37 H 1.09005 * 109.46291 * 58.53287 * 15 14 13 38 38 H 0.97007 * 120.00123 * 95.06773 * 16 15 14 39 39 H 0.96996 * 120.00084 * 179.97438 * 20 19 17 40 40 H 1.08993 * 109.49970 * 301.41145 * 25 15 14 41 41 H 1.09007 * 109.49370 * 181.31420 * 25 15 14 42 42 H 1.09000 * 109.59048 * 353.37512 * 26 12 10 43 43 H 1.09007 * 109.58739 * 113.65653 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2923 2.3738 -0.0005 5 6 1.9199 3.6035 0.0000 6 6 3.3041 3.6843 0.0005 7 17 4.0793 5.2376 0.0019 8 6 4.0673 2.5359 0.0051 9 6 3.4441 1.2855 -0.0003 10 6 4.2546 0.0527 0.0002 11 8 4.0802 -0.7900 -0.8588 12 7 5.1882 -0.1395 0.9531 13 6 5.4781 0.9100 1.9396 14 6 5.3502 0.3067 3.3466 15 6 6.2557 -0.9225 3.4526 16 7 6.1648 -1.4805 4.8041 17 6 6.9495 -0.9770 5.8070 18 1 7.6357 -0.1687 5.6016 19 6 6.8629 -1.5055 7.0877 20 7 7.6175 -1.0218 8.0516 21 14 5.6756 -2.9030 7.4431 22 1 6.3598 -4.2022 7.2216 23 1 5.2192 -2.8182 8.8537 24 1 4.5039 -2.7997 6.5367 25 6 5.8105 -1.9754 2.4351 26 6 5.9397 -1.4001 1.0212 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.2137 2.3190 -0.0005 31 1 1.3294 4.5077 0.0000 32 1 5.1453 2.6030 0.0093 33 1 6.4914 1.2827 1.7896 34 1 4.7655 1.7267 1.8244 35 1 4.3160 0.0133 3.5267 36 1 5.6531 1.0467 4.0874 37 1 7.2865 -0.6329 3.2481 38 1 5.5487 -2.2068 4.9885 39 1 7.5568 -1.3908 8.9466 40 1 4.7720 -2.2473 2.6238 41 1 6.4412 -2.8597 2.5272 42 1 5.5318 -2.1083 0.2999 43 1 6.9895 -1.2125 0.7954 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997257707.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:41 Heat of formation + Delta-G solvation = -30.267680 kcal Electronic energy + Delta-G solvation = -27302.600147 eV Core-core repulsion = 23374.679838 eV Total energy + Delta-G solvation = -3927.920310 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.04256 -39.56122 -38.01864 -37.36867 -36.44263 -34.62892 -32.53765 -31.70942 -30.58010 -30.38131 -29.72445 -27.66601 -25.52499 -23.90053 -23.22670 -22.44807 -22.07713 -20.55694 -19.51823 -18.29606 -17.68815 -17.31377 -16.91813 -16.33874 -15.96439 -15.61665 -14.98683 -14.85740 -14.80813 -14.27166 -14.11035 -13.85397 -13.70168 -13.51444 -13.27019 -12.96840 -12.78438 -12.53813 -12.31950 -12.21201 -12.09639 -11.85240 -11.70662 -11.28279 -11.11740 -11.02988 -10.95744 -10.89644 -10.57169 -10.26500 -9.90102 -9.89748 -9.60827 -9.41079 -8.93533 -8.60238 -8.47374 -7.29986 -5.79486 -3.15231 0.55248 0.79588 1.80380 2.59265 2.84468 2.93336 3.28895 3.36083 3.39462 3.44016 4.17290 4.30342 4.53278 4.57172 4.65880 4.80155 4.80995 4.96083 5.03138 5.09395 5.16001 5.20633 5.30434 5.34531 5.42673 5.47854 5.57598 5.63210 5.66923 5.73973 5.85146 5.93387 6.04602 6.09116 6.16267 6.28230 6.37895 6.53637 6.79399 6.90273 6.93425 7.42755 7.96264 8.15857 8.39706 9.17946 9.90819 10.10667 11.38777 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.012059 B = 0.003225 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.372451 B = 8679.294241 C = 9438.510267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.295 6.295 3 C 0.179 3.821 4 C -0.202 4.202 5 C -0.050 4.050 6 C -0.079 4.079 7 Cl -0.064 7.064 8 C -0.040 4.040 9 C -0.145 4.145 10 C 0.570 3.430 11 O -0.531 6.531 12 N -0.600 5.600 13 C 0.099 3.901 14 C -0.149 4.149 15 C 0.183 3.817 16 N -0.748 5.748 17 C -0.244 4.244 18 H 0.091 0.909 19 C 0.006 3.994 20 N -0.934 5.934 21 Si 0.883 3.117 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.278 1.278 25 C -0.143 4.143 26 C 0.118 3.882 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.104 0.896 30 H 0.144 0.856 31 H 0.140 0.860 32 H 0.147 0.853 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.058 0.942 38 H 0.361 0.639 39 H 0.259 0.741 40 H 0.062 0.938 41 H 0.078 0.922 42 H 0.090 0.910 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.723 9.201 -19.602 25.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.206 6.206 3 C 0.131 3.869 4 C -0.221 4.221 5 C -0.069 4.069 6 C -0.105 4.105 7 Cl -0.035 7.035 8 C -0.060 4.060 9 C -0.149 4.149 10 C 0.357 3.643 11 O -0.408 6.408 12 N -0.332 5.332 13 C -0.024 4.024 14 C -0.190 4.190 15 C 0.074 3.926 16 N -0.390 5.390 17 C -0.374 4.374 18 H 0.109 0.891 19 C -0.190 4.190 20 N -0.581 5.581 21 Si 0.714 3.286 22 H -0.211 1.211 23 H -0.218 1.218 24 H -0.204 1.204 25 C -0.182 4.182 26 C -0.004 4.004 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.123 0.877 30 H 0.161 0.839 31 H 0.158 0.842 32 H 0.165 0.835 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.076 0.924 38 H 0.193 0.807 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.097 0.903 42 H 0.108 0.892 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.473 8.782 -19.889 25.577 hybrid contribution -1.082 -0.563 0.624 1.370 sum -14.555 8.219 -19.264 25.505 Atomic orbital electron populations 1.23194 0.77791 1.04690 1.01476 1.86213 1.21726 1.25743 1.86962 1.18958 0.90694 0.85022 0.92183 1.21159 1.00642 0.91145 1.09161 1.20959 0.92380 0.98164 0.95429 1.20590 0.92896 0.86907 1.10142 1.98382 1.81071 1.26866 1.97188 1.21032 1.00673 0.88960 0.95306 1.19120 0.91027 0.94054 1.10672 1.17835 0.79346 0.85595 0.81532 1.90779 1.68022 1.44908 1.37078 1.48088 1.37773 1.17430 1.29939 1.22192 1.01339 0.89919 0.88982 1.22700 1.01585 1.00668 0.94088 1.20151 0.97013 0.90783 0.84683 1.42805 1.48471 1.42050 1.05685 1.19072 1.15312 1.15148 0.87841 0.89141 1.24662 0.99228 0.99325 0.95810 1.69700 1.42416 1.44482 1.01532 0.86569 0.81492 0.83314 0.77258 1.21060 1.21779 1.20390 1.22249 1.02216 0.99688 0.93999 1.21615 0.95754 0.85035 0.97990 0.92222 0.92262 0.87728 0.83867 0.84190 0.83501 0.90923 0.89980 0.92322 0.90153 0.92419 0.80661 0.93054 0.91917 0.90350 0.89210 0.91149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 101.05 0.99 1.16 16 2 O -0.30 -3.64 9.71 -21.29 -0.21 -3.84 16 3 C 0.18 2.10 6.69 -38.70 -0.26 1.85 16 4 C -0.20 -1.74 9.03 -39.48 -0.36 -2.10 16 5 C -0.05 -0.41 9.81 -39.50 -0.39 -0.80 16 6 C -0.08 -0.75 6.31 -39.56 -0.25 -1.00 16 7 Cl -0.06 -0.58 28.94 -51.86 -1.50 -2.08 16 8 C -0.04 -0.43 7.19 -39.16 -0.28 -0.71 16 9 C -0.14 -1.85 4.89 -104.85 -0.51 -2.36 16 10 C 0.57 8.63 6.84 -12.47 -0.09 8.55 16 11 O -0.53 -9.63 16.21 2.70 0.04 -9.59 16 12 N -0.60 -8.44 2.97 -173.73 -0.52 -8.95 16 13 C 0.10 1.29 5.57 -3.48 -0.02 1.27 16 14 C -0.15 -2.45 5.67 -26.39 -0.15 -2.60 16 15 C 0.18 3.34 2.73 -67.89 -0.19 3.16 16 16 N -0.75 -17.18 4.92 -53.38 -0.26 -17.45 16 17 C -0.24 -6.68 10.41 -15.06 -0.16 -6.84 16 18 H 0.09 2.64 8.06 -52.48 -0.42 2.22 16 19 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 20 N -0.93 -28.93 13.97 55.49 0.78 -28.16 16 21 Si 0.88 21.93 27.73 -169.99 -4.71 17.22 16 22 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 24 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 25 C -0.14 -2.21 5.55 -26.61 -0.15 -2.36 16 26 C 0.12 1.64 6.42 -3.71 -0.02 1.62 16 27 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 28 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 29 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.14 0.83 6.30 -52.49 -0.33 0.50 16 31 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 32 H 0.15 1.40 7.37 -52.48 -0.39 1.01 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.08 0.97 4.72 -51.93 -0.25 0.73 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 38 H 0.36 8.28 5.66 -40.82 -0.23 8.05 16 39 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.08 1.18 8.14 -51.92 -0.42 0.76 16 42 H 0.09 1.28 7.03 -51.93 -0.36 0.92 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 363.52 15.07 5.48 5.48 Total: -1.00 -33.94 363.52 -8.57 -42.51 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -5.75 Total: 5.95 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -1.92 Total: -1.10 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: 0.00 Total: -54.56 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -0.16 Total: -13.43 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.22 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.50 Total: -2.08 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.94 -8.57 -42.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997257707.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.246 kcal (2) G-P(sol) polarization free energy of solvation -33.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds