Wall clock time and date at job start Tue Mar 31 2020 21:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35668 * 116.99885 * 2 1 4 4 C 1.38694 * 120.13961 * 359.97438 * 3 2 1 5 5 C 1.38055 * 120.10015 * 179.97438 * 4 3 2 6 6 C 1.38651 * 120.37939 * 0.02562 * 5 4 3 7 7 Cl 1.73599 * 119.86470 * 180.02562 * 6 5 4 8 8 C 1.37886 * 120.26791 * 359.78215 * 6 5 4 9 9 C 1.39717 * 119.89799 * 0.44804 * 8 6 5 10 10 C 1.47535 * 120.18517 * 179.80925 * 9 8 6 11 11 O 1.21589 * 120.00291 * 234.42074 * 10 9 8 12 12 N 1.34777 * 119.99860 * 54.42877 * 10 9 8 13 13 C 1.46929 * 120.62982 * 355.55281 * 12 10 9 14 14 C 1.53627 * 108.53922 * 126.37372 * 13 12 10 15 15 C 1.53038 * 109.24273 * 54.85598 * 14 13 12 16 16 N 1.46502 * 109.45895 * 178.48799 * 15 14 13 17 17 C 1.36936 * 120.00361 * 275.06956 * 16 15 14 18 18 H 1.08006 * 119.99757 * 359.97438 * 17 16 15 19 19 C 1.38806 * 120.00225 * 179.97438 * 17 16 15 20 20 N 1.31625 * 120.00134 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99991 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47077 * 90.00361 * 21 19 17 23 23 H 1.48505 * 109.47118 * 210.00113 * 21 19 17 24 24 H 1.48496 * 109.47169 * 329.99842 * 21 19 17 25 25 C 1.53039 * 109.53730 * 298.50764 * 15 14 13 26 26 C 1.46922 * 120.62943 * 175.83691 * 12 10 9 27 27 H 1.09004 * 109.47085 * 300.00288 * 1 2 3 28 28 H 1.09000 * 109.47216 * 60.00236 * 1 2 3 29 29 H 1.08998 * 109.47041 * 180.02562 * 1 2 3 30 30 H 1.08000 * 119.95214 * 0.02562 * 4 3 2 31 31 H 1.07999 * 119.81468 * 180.02562 * 5 4 3 32 32 H 1.08005 * 120.05133 * 180.23220 * 8 6 5 33 33 H 1.08997 * 109.58815 * 246.20314 * 13 12 10 34 34 H 1.08999 * 109.58697 * 6.63014 * 13 12 10 35 35 H 1.08997 * 109.63531 * 294.86095 * 14 13 12 36 36 H 1.09000 * 109.43119 * 174.72527 * 14 13 12 37 37 H 1.09005 * 109.46291 * 58.53287 * 15 14 13 38 38 H 0.97007 * 120.00123 * 95.06773 * 16 15 14 39 39 H 0.96996 * 120.00084 * 179.97438 * 20 19 17 40 40 H 1.08993 * 109.49970 * 301.41145 * 25 15 14 41 41 H 1.09007 * 109.49370 * 181.31420 * 25 15 14 42 42 H 1.09000 * 109.59048 * 353.37512 * 26 12 10 43 43 H 1.09007 * 109.58739 * 113.65653 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2923 2.3738 -0.0005 5 6 1.9199 3.6035 0.0000 6 6 3.3041 3.6843 0.0005 7 17 4.0793 5.2376 0.0019 8 6 4.0673 2.5359 0.0051 9 6 3.4441 1.2855 -0.0003 10 6 4.2546 0.0527 0.0002 11 8 4.0802 -0.7900 -0.8588 12 7 5.1882 -0.1395 0.9531 13 6 5.4781 0.9100 1.9396 14 6 5.3502 0.3067 3.3466 15 6 6.2557 -0.9225 3.4526 16 7 6.1648 -1.4805 4.8041 17 6 6.9495 -0.9770 5.8070 18 1 7.6357 -0.1687 5.6016 19 6 6.8629 -1.5055 7.0877 20 7 7.6175 -1.0218 8.0516 21 14 5.6756 -2.9030 7.4431 22 1 6.3598 -4.2022 7.2216 23 1 5.2192 -2.8182 8.8537 24 1 4.5039 -2.7997 6.5367 25 6 5.8105 -1.9754 2.4351 26 6 5.9397 -1.4001 1.0212 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.2137 2.3190 -0.0005 31 1 1.3294 4.5077 0.0000 32 1 5.1453 2.6030 0.0093 33 1 6.4914 1.2827 1.7896 34 1 4.7655 1.7267 1.8244 35 1 4.3160 0.0133 3.5267 36 1 5.6531 1.0467 4.0874 37 1 7.2865 -0.6329 3.2481 38 1 5.5487 -2.2068 4.9885 39 1 7.5568 -1.3908 8.9466 40 1 4.7720 -2.2473 2.6238 41 1 6.4412 -2.8597 2.5272 42 1 5.5318 -2.1083 0.2999 43 1 6.9895 -1.2125 0.7954 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997257707.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:40 Heat of formation + Delta-G solvation = -52.011810 kcal Electronic energy + Delta-G solvation = -27303.543044 eV Core-core repulsion = 23374.679838 eV Total energy + Delta-G solvation = -3928.863206 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.94608 -40.57208 -38.80637 -38.67978 -37.17074 -36.25555 -34.04899 -33.05309 -31.71994 -31.38357 -31.08886 -28.27149 -26.89867 -25.16471 -24.44337 -23.59252 -23.18488 -21.87634 -20.73200 -19.58924 -19.01786 -18.46941 -17.75585 -17.29029 -16.78903 -16.68035 -16.45473 -16.07609 -15.86869 -15.59155 -15.12979 -15.04014 -14.89440 -14.71316 -14.48162 -14.29780 -14.07164 -13.56795 -13.51550 -13.25570 -13.05817 -12.93636 -12.85316 -12.64750 -12.37181 -12.24102 -12.14365 -11.99864 -11.98645 -11.78599 -11.67410 -11.35859 -11.05357 -10.90684 -10.19336 -9.75542 -9.30153 -9.26347 -8.00824 -5.33785 -0.21523 0.05814 1.08084 1.38297 1.40204 1.47321 1.53186 1.91956 2.19328 2.44610 2.49046 3.27927 3.31674 3.52255 3.63001 3.80820 3.88447 3.97159 4.02783 4.13173 4.24460 4.27316 4.30704 4.36156 4.36416 4.53740 4.59916 4.63874 4.70165 4.73011 4.77731 4.82551 4.96581 5.00014 5.03816 5.04764 5.24990 5.35781 5.43531 5.56915 5.79360 6.19405 6.23430 6.32244 7.03004 7.09060 7.85568 8.03978 9.20610 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.012059 B = 0.003225 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.372451 B = 8679.294241 C = 9438.510267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.329 6.329 3 C 0.164 3.836 4 C -0.193 4.193 5 C -0.041 4.041 6 C -0.084 4.084 7 Cl -0.059 7.059 8 C -0.043 4.043 9 C -0.173 4.173 10 C 0.569 3.431 11 O -0.569 6.569 12 N -0.600 5.600 13 C 0.109 3.891 14 C -0.140 4.140 15 C 0.176 3.824 16 N -0.753 5.753 17 C -0.224 4.224 18 H 0.062 0.938 19 C -0.062 4.062 20 N -0.983 5.983 21 Si 0.950 3.050 22 H -0.279 1.279 23 H -0.298 1.298 24 H -0.257 1.257 25 C -0.131 4.131 26 C 0.122 3.878 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.111 0.889 30 H 0.175 0.825 31 H 0.170 0.830 32 H 0.153 0.847 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.049 0.951 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.363 0.637 39 H 0.257 0.743 40 H 0.055 0.945 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.816 9.968 -21.031 28.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.242 6.242 3 C 0.116 3.884 4 C -0.211 4.211 5 C -0.060 4.060 6 C -0.110 4.110 7 Cl -0.031 7.031 8 C -0.062 4.062 9 C -0.177 4.177 10 C 0.358 3.642 11 O -0.449 6.449 12 N -0.331 5.331 13 C -0.014 4.014 14 C -0.181 4.181 15 C 0.069 3.931 16 N -0.395 5.395 17 C -0.355 4.355 18 H 0.080 0.920 19 C -0.253 4.253 20 N -0.634 5.634 21 Si 0.778 3.222 22 H -0.206 1.206 23 H -0.225 1.225 24 H -0.182 1.182 25 C -0.169 4.169 26 C -0.001 4.001 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.129 0.871 30 H 0.192 0.808 31 H 0.187 0.813 32 H 0.171 0.829 33 H 0.109 0.891 34 H 0.116 0.884 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.195 0.805 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -15.585 9.565 -21.371 28.126 hybrid contribution -0.442 -0.706 0.987 1.291 sum -16.027 8.859 -20.384 27.401 Atomic orbital electron populations 1.23488 0.75560 1.05824 1.03150 1.86165 1.24249 1.26615 1.87130 1.19228 0.90638 0.85900 0.92588 1.21475 1.02012 0.90039 1.07622 1.21343 0.92037 0.99171 0.93399 1.20707 0.93557 0.86726 1.10059 1.98387 1.81151 1.26365 1.97162 1.21062 1.01107 0.88685 0.95359 1.19071 0.91591 0.93546 1.13525 1.18234 0.79008 0.86044 0.80875 1.90744 1.69024 1.46552 1.38542 1.48145 1.37615 1.17535 1.29846 1.22163 1.02971 0.89762 0.86487 1.22495 1.00249 0.99363 0.95961 1.20397 0.97425 0.92232 0.83090 1.42848 1.47841 1.42224 1.06573 1.19044 1.14228 1.13467 0.88799 0.91954 1.25415 1.01616 1.02504 0.95795 1.69870 1.44935 1.46678 1.01942 0.85485 0.79875 0.79984 0.76858 1.20565 1.22459 1.18189 1.22110 1.01740 0.99052 0.94042 1.21592 0.96823 0.85115 0.96558 0.90629 0.90363 0.87085 0.80802 0.81267 0.82949 0.89088 0.88360 0.93242 0.91749 0.92789 0.80460 0.93449 0.92574 0.89725 0.89505 0.89327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.81 113.37 1.11 1.28 16 2 O -0.33 -7.80 9.71 -87.37 -0.85 -8.64 16 3 C 0.16 3.61 6.69 22.84 0.15 3.76 16 4 C -0.19 -2.74 9.03 22.34 0.20 -2.54 16 5 C -0.04 -0.54 9.81 22.33 0.22 -0.32 16 6 C -0.08 -1.39 6.31 22.29 0.14 -1.25 16 7 Cl -0.06 -0.94 28.94 -2.72 -0.08 -1.02 16 8 C -0.04 -0.84 7.19 22.54 0.16 -0.68 16 9 C -0.17 -4.24 4.89 -20.01 -0.10 -4.34 16 10 C 0.57 16.99 6.84 86.70 0.59 17.58 16 11 O -0.57 -20.75 16.21 -1.52 -0.02 -20.78 16 12 N -0.60 -16.28 2.97 -821.81 -2.44 -18.72 16 13 C 0.11 2.69 5.57 86.51 0.48 3.17 16 14 C -0.14 -4.49 5.67 30.82 0.17 -4.32 16 15 C 0.18 6.31 2.73 45.02 0.12 6.44 16 16 N -0.75 -34.17 4.92 -322.81 -1.59 -35.76 16 17 C -0.22 -12.43 10.41 84.03 0.87 -11.56 16 18 H 0.06 3.75 8.06 -2.91 -0.02 3.72 16 19 C -0.06 -3.60 5.50 84.86 0.47 -3.13 16 20 N -0.98 -62.40 13.97 21.65 0.30 -62.10 16 21 Si 0.95 45.42 27.73 68.60 1.90 47.32 16 22 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 23 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 24 H -0.26 -11.25 6.52 99.48 0.65 -10.60 16 25 C -0.13 -3.91 5.55 30.67 0.17 -3.74 16 26 C 0.12 3.24 6.42 86.36 0.55 3.79 16 27 H 0.08 0.66 7.66 -2.38 -0.02 0.64 16 28 H 0.08 0.64 7.66 -2.39 -0.02 0.62 16 29 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.17 1.29 6.30 -2.91 -0.02 1.27 16 31 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 32 H 0.15 2.67 7.37 -2.91 -0.02 2.65 16 33 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.10 2.17 4.72 -2.39 -0.01 2.16 16 35 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.05 1.99 8.08 -2.38 -0.02 1.97 16 38 H 0.36 16.15 5.66 -92.70 -0.52 15.63 16 39 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 40 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 42 H 0.09 2.43 7.03 -2.39 -0.02 2.41 16 43 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 Total: -1.00 -75.06 363.52 3.02 -72.04 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: 0.46 Total: 23.51 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: 5.33 Total: 4.14 kcal Atomic # 7 Polarization: -112.85 SS G_CDS: -3.72 Total: -116.57 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -0.87 Total: -29.42 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.90 Total: 47.32 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -0.08 Total: -1.02 kcal Total: -75.06 3.02 -72.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997257707.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.032 kcal (2) G-P(sol) polarization free energy of solvation -75.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds