Wall clock time and date at job start Tue Mar 31 2020 20:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21274 * 119.99636 * 2 1 4 4 N 1.34774 * 119.99823 * 179.72011 * 2 1 3 5 5 C 1.38904 * 119.99742 * 180.27890 * 4 2 1 6 6 N 1.29519 * 125.26579 * 179.97438 * 5 4 2 7 7 C 1.33634 * 115.66298 * 180.02562 * 6 5 4 8 8 C 1.47206 * 122.50160 * 180.02562 * 7 6 5 9 9 O 1.21640 * 120.00408 * 173.11120 * 8 7 6 10 10 N 1.34777 * 119.99466 * 353.11919 * 8 7 6 11 11 C 1.46494 * 120.00359 * 2.68905 * 10 8 7 12 12 C 1.46498 * 119.99762 * 182.69698 * 10 8 7 13 13 C 1.53779 * 113.61861 * 219.13292 * 12 10 8 14 14 C 1.53949 * 87.02008 * 220.04704 * 13 12 10 15 15 N 1.46510 * 113.74297 * 139.94404 * 14 13 12 16 16 C 1.36935 * 120.00160 * 107.39828 * 15 14 13 17 17 H 1.07998 * 119.99782 * 0.02562 * 16 15 14 18 18 C 1.38807 * 119.99875 * 179.97438 * 16 15 14 19 19 N 1.31616 * 120.00036 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00143 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47418 * 89.99804 * 20 18 16 22 22 H 1.48495 * 109.47466 * 209.99894 * 20 18 16 23 23 H 1.48499 * 109.47089 * 330.00083 * 20 18 16 24 24 C 1.53777 * 87.11388 * 25.36349 * 14 13 12 25 25 C 1.34888 * 115.00076 * 0.02562 * 7 6 5 26 26 S 1.70983 * 109.19597 * 359.72740 * 25 7 6 27 27 H 1.08993 * 109.47106 * 0.02562 * 1 2 3 28 28 H 1.09008 * 109.46683 * 120.00308 * 1 2 3 29 29 H 1.08999 * 109.47091 * 239.99953 * 1 2 3 30 30 H 0.96996 * 120.00648 * 0.27588 * 4 2 1 31 31 H 1.09008 * 109.47135 * 83.98236 * 11 10 8 32 32 H 1.09000 * 109.47687 * 203.97960 * 11 10 8 33 33 H 1.08998 * 109.47754 * 323.98561 * 11 10 8 34 34 H 1.09007 * 112.85232 * 350.32906 * 12 10 8 35 35 H 1.09004 * 113.60735 * 334.56573 * 13 12 10 36 36 H 1.09000 * 113.61464 * 105.46795 * 13 12 10 37 37 H 1.09002 * 113.53769 * 270.80319 * 14 13 12 38 38 H 0.97006 * 119.99128 * 287.40025 * 15 14 13 39 39 H 0.97005 * 120.00255 * 179.97438 * 19 18 16 40 40 H 1.09006 * 113.61137 * 220.09022 * 24 14 13 41 41 H 1.08992 * 113.62126 * 89.18473 * 24 14 13 42 42 H 1.08004 * 125.40619 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 0.0057 5 6 3.5699 -1.1671 0.0116 6 7 4.3177 -2.2246 0.0178 7 6 5.6353 -2.0017 0.0232 8 6 6.6223 -3.0938 0.0301 9 8 7.8066 -2.8441 -0.0915 10 7 6.2137 -4.3704 0.1709 11 6 4.7837 -4.6764 0.2579 12 6 7.1996 -5.4519 0.2371 13 6 6.7717 -6.7226 -0.5161 14 6 7.3710 -7.5218 0.6553 15 7 6.5723 -8.6869 1.0442 16 6 7.0126 -9.9490 0.7467 17 1 7.9488 -10.0855 0.2258 18 6 6.2561 -11.0528 1.1156 19 7 6.6795 -12.2659 0.8302 20 14 4.6372 -10.8166 2.0172 21 1 3.5333 -10.7011 1.0306 22 1 4.3893 -11.9823 2.9031 23 1 4.7019 -9.5786 2.8346 24 6 7.1177 -6.2820 1.5291 25 6 5.9934 -0.7012 0.0220 26 16 4.5860 0.2695 0.0058 27 1 -0.3633 1.0276 -0.0005 28 1 -0.3633 -0.5139 -0.8900 29 1 -0.3633 -0.5138 0.8900 30 1 1.6960 -2.0072 0.0058 31 1 4.3654 -4.7466 -0.7462 32 1 4.6461 -5.6256 0.7759 33 1 4.2755 -3.8849 0.8087 34 1 8.2092 -5.1199 -0.0053 35 1 5.6912 -6.8308 -0.6110 36 1 7.2974 -6.8687 -1.4597 37 1 8.4275 -7.7569 0.5265 38 1 5.7316 -8.5641 1.5123 39 1 6.1511 -13.0373 1.0883 40 1 7.9223 -6.0730 2.2341 41 1 6.1321 -6.2695 1.9942 42 1 7.0083 -0.3316 0.0253 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999038099.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:36 Heat of formation + Delta-G solvation = 37.015902 kcal Electronic energy + Delta-G solvation = -26333.062233 eV Core-core repulsion = 22442.396016 eV Total energy + Delta-G solvation = -3890.666217 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.09955 -40.50799 -39.17394 -37.82056 -35.47405 -34.81101 -33.04743 -31.36314 -30.54886 -29.64971 -26.93814 -26.29789 -25.19633 -24.34725 -22.99935 -22.02067 -21.26168 -19.55812 -19.08039 -18.50860 -17.83024 -17.39618 -17.35275 -16.55163 -16.35036 -16.11556 -15.63444 -14.90255 -14.68837 -14.55521 -14.37752 -13.96487 -13.62729 -13.36055 -13.10883 -13.08506 -12.93561 -12.72690 -12.63721 -12.14566 -11.99685 -11.88323 -11.72326 -11.53144 -11.00649 -10.76094 -10.70688 -10.49170 -10.21687 -10.16713 -9.97515 -9.80989 -9.66280 -9.56700 -8.92606 -8.76345 -8.36468 -7.29365 -5.79754 -3.15586 0.23202 0.62239 1.38552 1.40982 2.01425 2.07761 3.11652 3.26096 3.34208 3.36316 3.42332 3.88403 4.07754 4.53655 4.55720 4.63287 4.77096 4.97846 5.06507 5.09456 5.13569 5.22203 5.28008 5.38069 5.40798 5.52322 5.66285 5.75285 5.79714 6.07326 6.11644 6.18205 6.18927 6.25188 6.41184 6.50895 6.73264 6.93042 7.11865 7.13831 7.49067 7.96692 8.15564 8.39832 9.17102 9.89527 10.09378 11.38457 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.016300 B = 0.002525 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.399569 B =11086.849110 C =12574.650008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.512 3.488 3 O -0.510 6.510 4 N -0.622 5.622 5 C 0.242 3.758 6 N -0.467 5.467 7 C 0.033 3.967 8 C 0.587 3.413 9 O -0.540 6.540 10 N -0.580 5.580 11 C 0.075 3.925 12 C 0.115 3.885 13 C -0.173 4.173 14 C 0.176 3.824 15 N -0.734 5.734 16 C -0.247 4.247 17 H 0.092 0.908 18 C 0.004 3.996 19 N -0.932 5.932 20 Si 0.884 3.116 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.277 1.277 24 C -0.165 4.165 25 C -0.261 4.261 26 S 0.270 5.730 27 H 0.104 0.896 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.427 0.573 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.117 0.883 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.362 0.638 39 H 0.260 0.740 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.801 28.836 -1.487 32.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.300 3.700 3 O -0.384 6.384 4 N -0.273 5.273 5 C -0.126 4.126 6 N -0.191 5.191 7 C -0.101 4.101 8 C 0.372 3.628 9 O -0.418 6.418 10 N -0.310 5.310 11 C -0.068 4.068 12 C 0.012 3.988 13 C -0.215 4.215 14 C 0.064 3.936 15 N -0.373 5.373 16 C -0.377 4.377 17 H 0.110 0.890 18 C -0.191 4.191 19 N -0.580 5.580 20 Si 0.715 3.285 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.203 1.203 24 C -0.205 4.205 25 C -0.403 4.403 26 S 0.522 5.478 27 H 0.123 0.877 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.267 0.733 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.118 0.882 34 H 0.135 0.865 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.106 0.894 38 H 0.195 0.805 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -13.151 30.023 -1.629 32.817 hybrid contribution -0.953 -1.331 0.604 1.745 sum -14.104 28.691 -1.025 31.987 Atomic orbital electron populations 1.21902 0.88433 1.06832 1.05452 1.21375 0.91749 0.82062 0.74858 1.90695 1.69647 1.30667 1.47402 1.42880 1.01537 1.11644 1.71231 1.24598 0.89947 0.93961 1.04099 1.67536 1.03359 1.27738 1.20494 1.19908 0.88618 0.93688 1.07874 1.17205 0.86613 0.81859 0.77104 1.90795 1.16390 1.83401 1.51237 1.47677 1.08128 1.05417 1.69758 1.22228 0.79775 1.02483 1.02339 1.22668 0.93252 0.84633 0.98267 1.24307 1.02101 0.94670 1.00389 1.21354 0.95829 0.84808 0.91622 1.42704 1.23438 1.02342 1.68859 1.19149 1.05733 0.81424 1.31396 0.89017 1.24695 0.98499 0.95105 1.00840 1.69702 1.39242 0.97081 1.51959 0.86550 0.85110 0.76980 0.79905 1.21065 1.21705 1.20334 1.23950 1.02127 0.97439 0.96988 1.26896 1.07772 0.97643 1.08037 1.84893 0.91189 1.05486 1.66247 0.87744 0.88259 0.88248 0.73337 0.92798 0.91477 0.88223 0.86494 0.89956 0.91627 0.89388 0.80520 0.93023 0.91338 0.90253 0.79320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.17 10.32 36.01 0.37 0.20 16 2 C 0.51 2.77 7.90 -10.99 -0.09 2.68 16 3 O -0.51 -4.59 14.59 5.56 0.08 -4.51 16 4 N -0.62 -3.53 5.40 -11.91 -0.06 -3.59 16 5 C 0.24 2.24 8.36 -87.53 -0.73 1.50 16 6 N -0.47 -5.18 6.72 -10.51 -0.07 -5.25 16 7 C 0.03 0.43 6.46 -84.63 -0.55 -0.12 16 8 C 0.59 9.09 7.64 -12.62 -0.10 9.00 16 9 O -0.54 -9.70 16.14 5.24 0.08 -9.62 16 10 N -0.58 -8.56 3.08 -174.35 -0.54 -9.10 16 11 C 0.07 0.94 8.14 59.84 0.49 1.42 16 12 C 0.12 1.80 4.22 -67.12 -0.28 1.52 16 13 C -0.17 -2.92 7.31 -25.83 -0.19 -3.10 16 14 C 0.18 3.35 4.48 -67.03 -0.30 3.05 16 15 N -0.73 -17.08 5.21 -52.55 -0.27 -17.36 16 16 C -0.25 -6.90 10.45 -15.06 -0.16 -7.06 16 17 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 18 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 19 N -0.93 -29.11 13.97 55.49 0.78 -28.34 16 20 Si 0.88 21.74 27.74 -169.99 -4.71 17.02 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 24 C -0.16 -2.67 7.34 -25.92 -0.19 -2.87 16 25 C -0.26 -2.86 10.55 29.54 0.31 -2.55 16 26 S 0.27 2.48 20.29 -107.50 -2.18 0.30 16 27 H 0.10 0.12 8.12 -51.93 -0.42 -0.30 16 28 H 0.10 -0.06 8.14 -51.92 -0.42 -0.48 16 29 H 0.10 -0.06 8.14 -51.93 -0.42 -0.48 16 30 H 0.43 1.25 8.82 -40.82 -0.36 0.89 16 31 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 32 H 0.07 0.86 6.11 -51.93 -0.32 0.54 16 33 H 0.10 1.16 5.26 -51.93 -0.27 0.88 16 34 H 0.12 1.90 7.20 -51.93 -0.37 1.53 16 35 H 0.08 1.40 6.68 -51.93 -0.35 1.05 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.09 1.70 8.10 -51.93 -0.42 1.28 16 38 H 0.36 8.22 5.79 -40.82 -0.24 7.99 16 39 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.08 1.27 6.88 -51.93 -0.36 0.91 16 42 H 0.19 1.91 8.00 -52.48 -0.42 1.49 16 LS Contribution 360.58 15.07 5.43 5.43 Total: -1.00 -35.92 360.58 -8.21 -44.12 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -5.23 Total: 7.17 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -1.51 Total: 3.71 kcal Atomic # 7 Polarization: -63.46 SS G_CDS: -0.17 Total: -63.64 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: 0.17 Total: -14.13 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.71 Total: 17.02 kcal Atomic # 16 Polarization: 2.48 SS G_CDS: -2.18 Total: 0.30 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.92 -8.21 -44.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999038099.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.139 kcal (2) G-P(sol) polarization free energy of solvation -35.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds