Wall clock time and date at job start Tue Mar 31 2020 20:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35705 * 117.00164 * 2 1 4 4 C 1.39057 * 119.90209 * 0.02562 * 3 2 1 5 5 C 1.37649 * 120.12984 * 179.71983 * 4 3 2 6 6 C 1.39781 * 119.91894 * 0.52875 * 5 4 3 7 7 C 1.47518 * 120.10012 * 179.74611 * 6 5 4 8 8 O 1.21597 * 120.00361 * 223.83602 * 7 6 5 9 9 N 1.34783 * 120.00257 * 43.83264 * 7 6 5 10 10 C 1.46499 * 119.99281 * 5.58186 * 9 7 6 11 11 C 1.46497 * 120.00269 * 185.58661 * 9 7 6 12 12 C 1.53782 * 113.68965 * 199.00987 * 11 9 7 13 13 C 1.53786 * 87.08286 * 89.12200 * 12 11 9 14 14 N 1.46498 * 113.61694 * 270.88454 * 13 12 11 15 15 C 1.36934 * 119.99985 * 256.60488 * 14 13 12 16 16 H 1.08000 * 119.99822 * 0.02562 * 15 14 13 17 17 C 1.38816 * 120.00059 * 179.97438 * 15 14 13 18 18 N 1.31622 * 119.99739 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00254 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46858 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47321 * 119.99722 * 19 17 15 22 22 H 1.48497 * 109.47291 * 240.00393 * 19 17 15 23 23 C 1.53785 * 113.60933 * 296.54268 * 11 9 7 24 24 C 1.39855 * 119.80083 * 359.47140 * 6 5 4 25 25 Cl 1.73601 * 120.06175 * 180.27457 * 24 6 5 26 26 C 1.37892 * 119.87617 * 0.25135 * 24 6 5 27 27 H 1.08996 * 109.47590 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47368 * 300.00157 * 1 2 3 29 29 H 1.09002 * 109.46839 * 59.99835 * 1 2 3 30 30 H 1.08004 * 119.93871 * 359.97438 * 4 3 2 31 31 H 1.07994 * 120.04144 * 180.27616 * 5 4 3 32 32 H 1.09005 * 109.47115 * 265.59343 * 10 9 7 33 33 H 1.08996 * 109.47918 * 25.59984 * 10 9 7 34 34 H 1.09010 * 109.46877 * 145.60066 * 10 9 7 35 35 H 1.08996 * 112.85178 * 67.74094 * 11 9 7 36 36 H 1.08995 * 113.61619 * 203.67085 * 12 11 9 37 37 H 1.09000 * 113.61588 * 334.57859 * 12 11 9 38 38 H 1.08994 * 113.69016 * 139.98839 * 13 12 11 39 39 H 0.96998 * 119.99834 * 76.60506 * 14 13 12 40 40 H 0.97001 * 119.99784 * 179.97438 * 18 17 15 41 41 H 1.08997 * 113.61830 * 25.35278 * 23 11 9 42 42 H 1.09005 * 113.61044 * 156.25722 * 23 11 9 43 43 H 1.08001 * 119.96417 * 180.02562 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 1.2858 2.3741 0.0005 5 6 1.9059 3.6030 0.0064 6 6 3.3016 3.6797 0.0006 7 6 3.9702 4.9947 0.0011 8 8 4.9197 5.1943 -0.7318 9 7 3.5287 5.9750 0.8139 10 6 2.4655 5.6992 1.7834 11 6 4.1118 7.3161 0.7279 12 6 3.8631 8.1792 1.9762 13 6 5.1653 7.5917 2.5455 14 7 4.9687 6.3521 3.3011 15 6 5.0007 6.3723 4.6699 16 1 5.1703 7.3022 5.1924 17 6 4.8139 5.1978 5.3860 18 7 4.6067 4.0647 4.7491 19 14 4.8567 5.2255 7.2532 20 1 5.1047 6.6125 7.7221 21 1 3.5552 4.7478 7.7854 22 1 5.9449 4.3382 7.7366 23 6 5.6057 7.3626 1.0899 24 6 4.0622 2.5061 0.0001 25 17 5.7960 2.5935 0.0001 26 6 3.4324 1.2794 0.0000 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 0.2074 2.3146 0.0005 31 1 1.3148 4.5068 0.0113 32 1 1.5013 5.9670 1.3512 33 1 2.4690 4.6386 2.0348 34 1 2.6350 6.2870 2.6856 35 1 3.8731 7.8222 -0.2074 36 1 3.9151 9.2508 1.7836 37 1 2.9730 7.8914 2.5358 38 1 5.7780 8.3192 3.0776 39 1 4.8160 5.5171 2.8318 40 1 4.4766 3.2440 5.2495 41 1 6.1224 6.4157 0.9339 42 1 6.1341 8.2110 0.6550 43 1 4.0184 0.3722 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999566138.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:38 Heat of formation + Delta-G solvation = -10.601789 kcal Electronic energy + Delta-G solvation = -28116.422354 eV Core-core repulsion = 24189.354821 eV Total energy + Delta-G solvation = -3927.067533 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.85442 -40.97141 -39.40153 -38.15624 -37.29486 -35.72682 -34.90496 -32.27818 -31.83550 -31.19057 -28.34110 -28.19315 -26.59652 -25.80719 -25.04702 -23.99152 -23.26536 -21.24313 -19.64180 -19.32895 -19.12600 -18.07010 -17.82050 -17.11612 -16.84127 -16.65248 -16.55617 -16.15476 -15.75748 -15.44550 -15.14980 -15.01413 -14.82161 -14.55024 -14.23941 -13.94214 -13.63761 -13.50057 -13.27480 -13.07526 -13.00251 -12.79160 -12.75226 -12.59935 -12.48448 -12.17430 -12.07587 -11.92849 -11.74154 -11.66212 -11.60132 -11.15997 -10.84485 -10.64536 -9.97895 -9.50384 -9.30299 -8.91733 -7.86972 -5.15526 -0.17490 0.07930 0.99952 1.48058 1.50447 1.58791 1.68255 2.04455 2.31651 2.58057 2.59432 3.42687 3.44649 3.58760 3.78289 3.85869 3.91027 3.99849 4.03227 4.20932 4.30030 4.37794 4.42056 4.44394 4.45054 4.59230 4.69003 4.79673 4.83524 4.88528 4.94567 4.99849 5.05995 5.08314 5.13564 5.20689 5.34112 5.39203 5.48459 5.57463 5.81685 6.26344 6.33426 6.44582 7.20152 7.40544 8.17454 8.42850 9.34390 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.009927 B = 0.004718 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.941452 B = 5933.731800 C = 7067.590873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.324 6.324 3 C 0.163 3.837 4 C -0.201 4.201 5 C -0.028 4.028 6 C -0.178 4.178 7 C 0.558 3.442 8 O -0.558 6.558 9 N -0.580 5.580 10 C 0.077 3.923 11 C 0.129 3.871 12 C -0.157 4.157 13 C 0.143 3.857 14 N -0.716 5.716 15 C -0.240 4.240 16 H 0.075 0.925 17 C -0.065 4.065 18 N -0.956 5.956 19 Si 0.964 3.036 20 H -0.269 1.269 21 H -0.292 1.292 22 H -0.303 1.303 23 C -0.157 4.157 24 C 0.034 3.966 25 Cl -0.060 7.060 26 C -0.167 4.167 27 H 0.122 0.878 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.179 0.821 31 H 0.165 0.835 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.117 0.883 37 H 0.075 0.925 38 H 0.059 0.941 39 H 0.378 0.622 40 H 0.247 0.753 41 H 0.037 0.963 42 H 0.110 0.890 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.139 -1.931 -11.658 17.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.237 6.237 3 C 0.116 3.884 4 C -0.219 4.219 5 C -0.047 4.047 6 C -0.182 4.182 7 C 0.347 3.653 8 O -0.438 6.438 9 N -0.311 5.311 10 C -0.065 4.065 11 C 0.026 3.974 12 C -0.198 4.198 13 C 0.033 3.967 14 N -0.356 5.356 15 C -0.372 4.372 16 H 0.093 0.907 17 C -0.258 4.258 18 N -0.606 5.606 19 Si 0.795 3.205 20 H -0.193 1.193 21 H -0.219 1.219 22 H -0.231 1.231 23 C -0.197 4.197 24 C 0.006 3.994 25 Cl -0.031 7.031 26 C -0.187 4.187 27 H 0.141 0.859 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.196 0.804 31 H 0.182 0.818 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.135 0.865 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.212 0.788 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.128 0.872 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -12.394 -1.933 -11.825 17.239 hybrid contribution 0.569 -0.641 1.064 1.366 sum -11.825 -2.574 -10.761 16.194 Atomic orbital electron populations 1.23529 0.75382 1.06209 1.03052 1.86038 1.24337 1.25772 1.87527 1.18991 0.91052 0.85622 0.92741 1.21582 1.02279 0.90458 1.07604 1.21383 0.90973 0.99703 0.92592 1.19732 0.95224 0.91956 1.11289 1.18267 0.82802 0.84043 0.80168 1.90739 1.27908 1.82117 1.43024 1.47401 1.38109 1.09727 1.35865 1.22091 0.89284 1.02265 0.92896 1.21876 0.93993 0.82417 0.99112 1.24034 1.00712 0.99834 0.95181 1.21474 0.95513 0.88929 0.90799 1.42418 1.84982 1.05530 1.02655 1.19626 1.39809 0.93996 0.83794 0.90745 1.25397 1.03635 0.95373 1.01362 1.69844 1.57326 0.98406 1.34989 0.85208 0.76435 0.77323 0.81541 1.19318 1.21921 1.23077 1.23693 0.96686 1.01672 0.97637 1.20710 0.85144 0.93886 0.99685 1.98398 1.09632 1.98675 1.96357 1.20199 0.93074 0.96660 1.08749 0.85941 0.91208 0.90509 0.80410 0.81800 0.89795 0.92245 0.90354 0.88958 0.86457 0.90699 0.92256 0.78845 0.94387 0.94426 0.87184 0.83353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.24 16 2 O -0.32 -6.89 10.48 -90.26 -0.95 -7.83 16 3 C 0.16 4.08 6.69 22.63 0.15 4.23 16 4 C -0.20 -4.21 9.01 22.33 0.20 -4.01 16 5 C -0.03 -0.71 7.77 22.50 0.17 -0.53 16 6 C -0.18 -6.11 4.86 -20.07 -0.10 -6.21 16 7 C 0.56 21.51 6.62 86.69 0.57 22.09 16 8 O -0.56 -24.47 14.28 -4.02 -0.06 -24.53 16 9 N -0.58 -20.24 2.09 -823.39 -1.72 -21.96 16 10 C 0.08 2.48 7.38 127.77 0.94 3.43 16 11 C 0.13 4.19 4.18 45.52 0.19 4.38 16 12 C -0.16 -4.79 7.16 31.12 0.22 -4.57 16 13 C 0.14 5.65 4.55 45.52 0.21 5.86 16 14 N -0.72 -35.52 3.90 -320.44 -1.25 -36.77 16 15 C -0.24 -12.98 9.98 84.03 0.84 -12.14 16 16 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 17 C -0.06 -3.60 5.50 84.86 0.47 -3.13 16 18 N -0.96 -56.76 13.06 21.65 0.28 -56.47 16 19 Si 0.96 45.45 29.55 68.60 2.03 47.48 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 22 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 23 C -0.16 -5.78 7.10 31.12 0.22 -5.56 16 24 C 0.03 1.20 6.33 22.58 0.14 1.35 16 25 Cl -0.06 -2.37 26.97 -2.72 -0.07 -2.44 16 26 C -0.17 -5.10 9.75 22.35 0.22 -4.88 16 27 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.07 0.67 7.65 -2.38 -0.02 0.65 16 29 H 0.08 0.58 7.65 -2.39 -0.02 0.56 16 30 H 0.18 2.19 6.27 -2.91 -0.02 2.17 16 31 H 0.16 3.21 6.41 -2.91 -0.02 3.19 16 32 H 0.08 1.94 7.27 -2.38 -0.02 1.92 16 33 H 0.06 2.15 6.10 -2.39 -0.01 2.14 16 34 H 0.08 2.95 4.72 -2.38 -0.01 2.93 16 35 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 36 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 37 H 0.07 2.41 5.75 -2.39 -0.01 2.39 16 38 H 0.06 2.32 8.12 -2.39 -0.02 2.30 16 39 H 0.38 20.36 6.13 -92.71 -0.57 19.79 16 40 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 41 H 0.04 1.69 7.02 -2.39 -0.02 1.68 16 42 H 0.11 3.34 8.14 -2.38 -0.02 3.32 16 43 H 0.15 4.19 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -72.54 358.19 4.32 -68.22 By element: Atomic # 1 Polarization: 32.27 SS G_CDS: 0.49 Total: 32.77 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: 5.57 Total: 1.54 kcal Atomic # 7 Polarization: -112.51 SS G_CDS: -2.69 Total: -115.21 kcal Atomic # 8 Polarization: -31.36 SS G_CDS: -1.00 Total: -32.36 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Atomic # 17 Polarization: -2.37 SS G_CDS: -0.07 Total: -2.44 kcal Total: -72.54 4.32 -68.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999566138.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.622 kcal (2) G-P(sol) polarization free energy of solvation -72.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds