Wall clock time and date at job start Tue Mar 31 2020 20:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35908 * 117.00194 * 2 1 4 4 C 1.38831 * 119.97862 * 359.97438 * 3 2 1 5 5 C 1.38349 * 120.22790 * 179.97438 * 4 3 2 6 6 Cl 1.73599 * 119.90836 * 180.02562 * 5 4 3 7 7 C 1.38129 * 120.18214 * 359.79267 * 5 4 3 8 8 C 1.39551 * 119.95045 * 0.48197 * 7 5 4 9 9 C 1.47857 * 120.11538 * 179.76921 * 8 7 5 10 10 O 1.21549 * 120.00412 * 140.45765 * 9 8 7 11 11 N 1.34782 * 119.99653 * 320.73027 * 9 8 7 12 12 C 1.46495 * 120.00096 * 4.54203 * 11 9 8 13 13 C 1.46500 * 119.99875 * 184.54023 * 11 9 8 14 14 C 1.53783 * 113.61552 * 217.50218 * 13 11 9 15 15 C 1.53780 * 87.08109 * 220.02008 * 14 13 11 16 16 N 1.46504 * 113.61055 * 270.88304 * 15 14 13 17 17 C 1.36933 * 119.99695 * 252.49474 * 16 15 14 18 18 H 1.08002 * 120.00711 * 359.97438 * 17 16 15 19 19 C 1.38819 * 119.99942 * 180.02562 * 17 16 15 20 20 N 1.31619 * 119.99783 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99886 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47169 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.46895 * 120.00120 * 21 19 17 24 24 H 1.48496 * 109.47115 * 239.99578 * 21 19 17 25 25 C 1.53778 * 113.61561 * 120.00112 * 13 11 9 26 26 C 1.38461 * 119.97720 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47352 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47155 * 299.99801 * 1 2 3 29 29 H 1.09002 * 109.46859 * 59.99825 * 1 2 3 30 30 H 1.07998 * 119.88446 * 0.02562 * 4 3 2 31 31 H 1.07994 * 120.02703 * 180.25443 * 7 5 4 32 32 H 1.08998 * 109.47323 * 86.01705 * 12 11 9 33 33 H 1.08998 * 109.47233 * 206.01195 * 12 11 9 34 34 H 1.08996 * 109.47317 * 326.01623 * 12 11 9 35 35 H 1.09003 * 112.84852 * 348.80298 * 13 11 9 36 36 H 1.09000 * 113.61417 * 334.56507 * 14 13 11 37 37 H 1.08990 * 113.61677 * 105.46741 * 14 13 11 38 38 H 1.09000 * 113.69733 * 139.98931 * 15 14 13 39 39 H 0.97001 * 120.00169 * 72.49641 * 16 15 14 40 40 H 0.97002 * 119.99716 * 180.02562 * 20 19 17 41 41 H 1.09000 * 113.61733 * 254.53256 * 25 13 11 42 42 H 1.08999 * 113.61352 * 25.43685 * 25 13 11 43 43 H 1.07994 * 120.09529 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2895 2.3750 -0.0005 5 6 1.9123 3.6104 0.0000 6 17 0.9582 5.0607 0.0000 7 6 3.2911 3.6930 0.0054 8 6 4.0589 2.5278 0.0001 9 6 5.5351 2.6120 0.0007 10 8 6.1880 1.8332 0.6674 11 7 6.1564 3.5560 -0.7337 12 6 5.3691 4.5603 -1.4532 13 6 7.6191 3.5777 -0.8125 14 6 8.2142 4.9957 -0.8284 15 6 9.2133 4.4797 -1.8773 16 7 10.4358 3.9183 -1.2970 17 6 11.6166 4.6053 -1.3915 18 1 11.6468 5.5608 -1.8941 19 6 12.7751 4.0732 -0.8421 20 7 12.7384 2.9086 -0.2300 21 14 14.3856 5.0107 -0.9704 22 1 14.1603 6.2842 -1.7002 23 1 14.8973 5.3044 0.3924 24 1 15.3798 4.1885 -1.7058 25 6 8.1615 3.4189 -2.2426 26 6 3.4288 1.2828 0.0005 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 0.2111 2.3159 -0.0005 31 1 3.7746 4.6587 0.0099 32 1 5.1487 5.3946 -0.7873 33 1 5.9367 4.9205 -2.3112 34 1 4.4363 4.1131 -1.7964 35 1 8.0918 2.9125 -0.0898 36 1 7.5298 5.7521 -1.2123 37 1 8.6802 5.2842 0.1137 38 1 9.4131 5.1907 -2.6790 39 1 10.4088 3.0600 -0.8460 40 1 13.5478 2.5369 0.1542 41 1 8.5850 2.4346 -2.4423 42 1 7.4627 3.7444 -3.0132 43 1 4.0181 0.3778 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999592886.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:42 Heat of formation + Delta-G solvation = -1.077926 kcal Electronic energy + Delta-G solvation = -26363.399897 eV Core-core repulsion = 22436.745350 eV Total energy + Delta-G solvation = -3926.654547 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.98625 -39.96580 -38.37227 -37.65425 -36.56850 -34.94877 -33.05101 -31.43706 -30.80944 -29.66478 -27.89646 -27.14011 -25.25291 -25.03433 -23.71211 -22.93983 -22.29774 -20.18323 -18.43328 -18.31009 -17.50430 -17.06477 -16.80790 -16.32551 -16.19569 -16.12222 -15.37795 -15.02755 -14.82091 -14.24452 -14.16837 -13.87753 -13.76031 -13.30924 -13.11698 -12.82103 -12.73429 -12.57956 -12.33531 -12.07146 -12.00151 -11.83847 -11.69006 -11.53211 -11.43475 -11.16134 -10.88596 -10.76241 -10.27932 -10.13358 -9.98906 -9.69477 -9.60668 -9.32778 -8.91964 -8.71212 -8.47393 -7.01402 -5.79179 -3.09561 0.41922 0.78365 1.60881 2.50154 2.69917 3.07225 3.30572 3.42741 3.47981 3.50724 4.13988 4.39267 4.51648 4.55898 4.62106 4.68425 4.75613 4.80337 5.00505 5.03571 5.10243 5.11503 5.14765 5.37757 5.39010 5.48308 5.57413 5.61761 5.65474 5.82582 5.85839 5.92506 6.02419 6.06973 6.19012 6.39118 6.54883 6.69495 6.75643 6.82059 6.99922 7.42980 7.69501 8.12682 8.38749 9.49629 10.05949 10.39912 11.42907 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.021789 B = 0.002246 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.766350 B =12461.913788 C =13362.888127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.308 6.308 3 C 0.137 3.863 4 C -0.186 4.186 5 C -0.003 4.003 6 Cl -0.061 7.061 7 C -0.124 4.124 8 C -0.070 4.070 9 C 0.555 3.445 10 O -0.523 6.523 11 N -0.592 5.592 12 C 0.068 3.932 13 C 0.123 3.877 14 C -0.181 4.181 15 C 0.173 3.827 16 N -0.706 5.706 17 C -0.245 4.245 18 H 0.073 0.927 19 C -0.012 4.012 20 N -0.929 5.929 21 Si 0.909 3.091 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C -0.168 4.168 26 C -0.094 4.094 27 H 0.104 0.896 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.142 0.858 31 H 0.150 0.850 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.121 0.879 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.387 0.613 40 H 0.256 0.744 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.045 0.440 -2.231 30.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.221 6.221 3 C 0.091 3.909 4 C -0.205 4.205 5 C -0.029 4.029 6 Cl -0.032 7.032 7 C -0.143 4.143 8 C -0.073 4.073 9 C 0.342 3.658 10 O -0.399 6.399 11 N -0.324 5.324 12 C -0.075 4.075 13 C 0.022 3.978 14 C -0.223 4.223 15 C 0.060 3.940 16 N -0.344 5.344 17 C -0.376 4.376 18 H 0.091 0.909 19 C -0.208 4.208 20 N -0.576 5.576 21 Si 0.740 3.260 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C -0.209 4.209 26 C -0.113 4.113 27 H 0.122 0.878 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.160 0.840 31 H 0.167 0.833 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.139 0.861 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.221 0.779 40 H 0.066 0.934 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -29.496 0.072 -1.911 29.558 hybrid contribution 0.322 0.522 0.176 0.638 sum -29.174 0.594 -1.735 29.231 Atomic orbital electron populations 1.23151 0.77874 1.04495 1.01582 1.86147 1.21752 1.25795 1.88449 1.18631 0.91719 0.84144 0.96430 1.21207 1.00906 0.90577 1.07832 1.20451 0.91501 0.87563 1.03424 1.98390 1.71808 1.36161 1.96815 1.21475 0.91517 0.99559 1.01746 1.19689 0.93750 0.92725 1.01154 1.18145 0.86402 0.81223 0.80042 1.90840 1.66305 1.41597 1.41191 1.47866 1.07658 1.29086 1.47759 1.22113 0.96313 0.91657 0.97371 1.22863 0.76304 0.99833 0.98848 1.24321 0.99931 0.94754 1.03339 1.20899 0.85754 0.93676 0.93710 1.42227 1.02958 1.23281 1.65929 1.19307 0.85985 1.01693 1.30641 0.90866 1.24798 0.98089 0.97148 1.00774 1.69682 1.27843 1.18171 1.41938 0.86097 0.83869 0.78840 0.77223 1.20489 1.21815 1.21825 1.23982 0.99201 1.01864 0.95806 1.20536 0.91364 0.98288 1.01153 0.87751 0.92339 0.92348 0.84033 0.83255 0.92217 0.90101 0.90823 0.86145 0.90893 0.90802 0.91319 0.77911 0.93391 0.90959 0.90381 0.83432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.11 16 2 O -0.31 -2.79 10.49 -19.45 -0.20 -2.99 16 3 C 0.14 1.34 6.68 -39.28 -0.26 1.07 16 4 C -0.19 -1.54 8.81 -39.32 -0.35 -1.89 16 5 C 0.00 -0.02 6.31 -39.58 -0.25 -0.27 16 6 Cl -0.06 -0.48 28.95 -51.86 -1.50 -1.98 16 7 C -0.12 -1.22 7.34 -39.13 -0.29 -1.51 16 8 C -0.07 -0.84 5.23 -104.99 -0.55 -1.39 16 9 C 0.55 8.48 7.35 -12.32 -0.09 8.39 16 10 O -0.52 -10.16 16.39 5.32 0.09 -10.07 16 11 N -0.59 -8.23 3.08 -174.12 -0.54 -8.77 16 12 C 0.07 0.66 7.56 59.84 0.45 1.12 16 13 C 0.12 2.06 4.10 -67.12 -0.28 1.79 16 14 C -0.18 -3.02 7.28 -25.92 -0.19 -3.21 16 15 C 0.17 3.32 4.56 -67.12 -0.31 3.01 16 16 N -0.71 -17.55 5.31 -52.63 -0.28 -17.83 16 17 C -0.25 -6.74 9.97 -15.06 -0.15 -6.89 16 18 H 0.07 1.94 7.83 -52.49 -0.41 1.52 16 19 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 20 N -0.93 -28.20 13.06 55.49 0.72 -27.48 16 21 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 25 C -0.17 -2.75 7.35 -25.92 -0.19 -2.94 16 26 C -0.09 -1.09 9.57 -39.02 -0.37 -1.46 16 27 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.22 7.66 -51.93 -0.40 -0.17 16 29 H 0.06 0.21 7.66 -51.93 -0.40 -0.18 16 30 H 0.14 0.84 6.28 -52.49 -0.33 0.51 16 31 H 0.15 1.30 5.33 -52.49 -0.28 1.02 16 32 H 0.06 0.50 6.91 -51.93 -0.36 0.14 16 33 H 0.08 0.73 6.18 -51.93 -0.32 0.41 16 34 H 0.07 0.62 5.80 -51.93 -0.30 0.32 16 35 H 0.12 2.43 7.21 -51.93 -0.37 2.05 16 36 H 0.07 0.99 6.63 -51.93 -0.34 0.65 16 37 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.07 1.29 8.10 -51.93 -0.42 0.86 16 39 H 0.39 10.37 7.90 -40.82 -0.32 10.05 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 41 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 42 H 0.08 1.06 6.98 -51.93 -0.36 0.70 16 43 H 0.15 1.78 8.05 -52.49 -0.42 1.35 16 LS Contribution 366.82 15.07 5.53 5.53 Total: -1.00 -32.87 366.82 -8.57 -41.44 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -5.45 Total: 8.37 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -1.92 Total: -3.50 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.09 Total: -54.07 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -0.12 Total: -13.06 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.50 Total: -1.98 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.87 -8.57 -41.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999592886.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.367 kcal (2) G-P(sol) polarization free energy of solvation -32.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds