Wall clock time and date at job start Tue Mar 31 2020 20:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35908 * 117.00194 * 2 1 4 4 C 1.38831 * 119.97862 * 359.97438 * 3 2 1 5 5 C 1.38349 * 120.22790 * 179.97438 * 4 3 2 6 6 Cl 1.73599 * 119.90836 * 180.02562 * 5 4 3 7 7 C 1.38129 * 120.18214 * 359.79267 * 5 4 3 8 8 C 1.39551 * 119.95045 * 0.48197 * 7 5 4 9 9 C 1.47857 * 120.11538 * 179.76921 * 8 7 5 10 10 O 1.21549 * 120.00412 * 140.45765 * 9 8 7 11 11 N 1.34782 * 119.99653 * 320.73027 * 9 8 7 12 12 C 1.46495 * 120.00096 * 4.54203 * 11 9 8 13 13 C 1.46500 * 119.99875 * 184.54023 * 11 9 8 14 14 C 1.53783 * 113.61552 * 217.50218 * 13 11 9 15 15 C 1.53780 * 87.08109 * 220.02008 * 14 13 11 16 16 N 1.46504 * 113.61055 * 270.88304 * 15 14 13 17 17 C 1.36933 * 119.99695 * 252.49474 * 16 15 14 18 18 H 1.08002 * 120.00711 * 359.97438 * 17 16 15 19 19 C 1.38819 * 119.99942 * 180.02562 * 17 16 15 20 20 N 1.31619 * 119.99783 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99886 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47169 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.46895 * 120.00120 * 21 19 17 24 24 H 1.48496 * 109.47115 * 239.99578 * 21 19 17 25 25 C 1.53778 * 113.61561 * 120.00112 * 13 11 9 26 26 C 1.38461 * 119.97720 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47352 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47155 * 299.99801 * 1 2 3 29 29 H 1.09002 * 109.46859 * 59.99825 * 1 2 3 30 30 H 1.07998 * 119.88446 * 0.02562 * 4 3 2 31 31 H 1.07994 * 120.02703 * 180.25443 * 7 5 4 32 32 H 1.08998 * 109.47323 * 86.01705 * 12 11 9 33 33 H 1.08998 * 109.47233 * 206.01195 * 12 11 9 34 34 H 1.08996 * 109.47317 * 326.01623 * 12 11 9 35 35 H 1.09003 * 112.84852 * 348.80298 * 13 11 9 36 36 H 1.09000 * 113.61417 * 334.56507 * 14 13 11 37 37 H 1.08990 * 113.61677 * 105.46741 * 14 13 11 38 38 H 1.09000 * 113.69733 * 139.98931 * 15 14 13 39 39 H 0.97001 * 120.00169 * 72.49641 * 16 15 14 40 40 H 0.97002 * 119.99716 * 180.02562 * 20 19 17 41 41 H 1.09000 * 113.61733 * 254.53256 * 25 13 11 42 42 H 1.08999 * 113.61352 * 25.43685 * 25 13 11 43 43 H 1.07994 * 120.09529 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2895 2.3750 -0.0005 5 6 1.9123 3.6104 0.0000 6 17 0.9582 5.0607 0.0000 7 6 3.2911 3.6930 0.0054 8 6 4.0589 2.5278 0.0001 9 6 5.5351 2.6120 0.0007 10 8 6.1880 1.8332 0.6674 11 7 6.1564 3.5560 -0.7337 12 6 5.3691 4.5603 -1.4532 13 6 7.6191 3.5777 -0.8125 14 6 8.2142 4.9957 -0.8284 15 6 9.2133 4.4797 -1.8773 16 7 10.4358 3.9183 -1.2970 17 6 11.6166 4.6053 -1.3915 18 1 11.6468 5.5608 -1.8941 19 6 12.7751 4.0732 -0.8421 20 7 12.7384 2.9086 -0.2300 21 14 14.3856 5.0107 -0.9704 22 1 14.1603 6.2842 -1.7002 23 1 14.8973 5.3044 0.3924 24 1 15.3798 4.1885 -1.7058 25 6 8.1615 3.4189 -2.2426 26 6 3.4288 1.2828 0.0005 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 0.2111 2.3159 -0.0005 31 1 3.7746 4.6587 0.0099 32 1 5.1487 5.3946 -0.7873 33 1 5.9367 4.9205 -2.3112 34 1 4.4363 4.1131 -1.7964 35 1 8.0918 2.9125 -0.0898 36 1 7.5298 5.7521 -1.2123 37 1 8.6802 5.2842 0.1137 38 1 9.4131 5.1907 -2.6790 39 1 10.4088 3.0600 -0.8460 40 1 13.5478 2.5369 0.1542 41 1 8.5850 2.4346 -2.4423 42 1 7.4627 3.7444 -3.0132 43 1 4.0181 0.3778 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999592886.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:41 Heat of formation + Delta-G solvation = -22.515841 kcal Electronic energy + Delta-G solvation = -26364.329515 eV Core-core repulsion = 22436.745350 eV Total energy + Delta-G solvation = -3927.584165 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.93030 -40.93972 -39.58510 -38.52239 -37.30943 -36.32172 -34.85231 -32.34266 -31.88481 -31.22648 -28.48122 -27.97014 -26.70247 -26.40186 -25.36692 -23.71308 -23.52222 -21.22102 -19.73939 -19.50940 -19.12414 -18.17120 -17.52681 -17.36009 -17.14299 -16.78941 -16.67427 -16.32147 -15.92193 -15.75460 -15.29864 -14.96471 -14.84226 -14.47805 -14.31237 -14.17490 -13.64429 -13.39876 -13.37332 -13.31341 -13.19593 -12.87792 -12.81519 -12.67974 -12.48177 -12.31645 -12.10714 -12.07757 -11.86434 -11.81895 -11.64691 -11.28627 -10.99526 -10.88440 -10.11324 -9.65219 -9.42463 -9.04112 -7.95113 -5.25395 -0.40101 0.03353 0.91610 1.47936 1.48175 1.49308 1.59350 1.80550 2.28106 2.43119 2.55720 3.25078 3.36938 3.64230 3.72963 3.80316 3.84467 3.86329 3.96392 4.01490 4.24303 4.26028 4.27897 4.34341 4.38220 4.39634 4.61772 4.74482 4.75181 4.79183 4.85345 4.86489 4.93514 4.99946 5.04733 5.10407 5.24263 5.24760 5.31299 5.52414 5.66986 6.20719 6.25998 6.30954 6.97408 7.31278 8.07187 8.28740 9.28709 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.021789 B = 0.002246 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.766350 B =12461.913788 C =13362.888127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.328 6.328 3 C 0.138 3.862 4 C -0.171 4.171 5 C -0.001 4.001 6 Cl -0.044 7.044 7 C -0.118 4.118 8 C -0.080 4.080 9 C 0.549 3.451 10 O -0.581 6.581 11 N -0.587 5.587 12 C 0.057 3.943 13 C 0.125 3.875 14 C -0.159 4.159 15 C 0.154 3.846 16 N -0.725 5.725 17 C -0.239 4.239 18 H 0.086 0.914 19 C -0.082 4.082 20 N -0.973 5.973 21 Si 0.977 3.023 22 H -0.260 1.260 23 H -0.297 1.297 24 H -0.295 1.295 25 C -0.148 4.148 26 C -0.113 4.113 27 H 0.121 0.879 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.170 0.830 31 H 0.164 0.836 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.117 0.883 37 H 0.045 0.955 38 H 0.082 0.918 39 H 0.370 0.630 40 H 0.250 0.750 41 H 0.049 0.951 42 H 0.119 0.881 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.349 3.030 -3.796 33.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.242 6.242 3 C 0.092 3.908 4 C -0.190 4.190 5 C -0.028 4.028 6 Cl -0.015 7.015 7 C -0.137 4.137 8 C -0.084 4.084 9 C 0.338 3.662 10 O -0.462 6.462 11 N -0.317 5.317 12 C -0.084 4.084 13 C 0.022 3.978 14 C -0.200 4.200 15 C 0.043 3.957 16 N -0.362 5.362 17 C -0.371 4.371 18 H 0.103 0.897 19 C -0.273 4.273 20 N -0.624 5.624 21 Si 0.806 3.194 22 H -0.184 1.184 23 H -0.224 1.224 24 H -0.222 1.222 25 C -0.188 4.188 26 C -0.133 4.133 27 H 0.139 0.861 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.188 0.812 31 H 0.181 0.819 32 H 0.100 0.900 33 H 0.115 0.885 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.136 0.864 37 H 0.064 0.936 38 H 0.100 0.900 39 H 0.202 0.798 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.137 0.863 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -32.880 2.735 -3.532 33.183 hybrid contribution 1.124 -0.277 0.631 1.318 sum -31.757 2.458 -2.901 31.984 Atomic orbital electron populations 1.23501 0.75553 1.06202 1.02904 1.86137 1.24181 1.25589 1.88256 1.18572 0.91043 0.85117 0.96067 1.21475 1.02196 0.89647 1.05707 1.20490 0.91272 0.88365 1.02684 1.98403 1.71215 1.35212 1.96686 1.21515 0.91925 0.99065 1.01153 1.19331 0.91627 0.93856 1.03576 1.18708 0.87814 0.80488 0.79169 1.90805 1.67833 1.43845 1.43718 1.47870 1.06587 1.29660 1.47566 1.22501 0.96706 0.91203 0.97980 1.22429 0.78277 0.99061 0.98045 1.24129 0.99326 0.95498 1.01090 1.21227 0.84762 0.95016 0.94655 1.42448 1.04435 1.22831 1.66478 1.19768 0.86835 1.01717 1.28775 0.89654 1.25672 1.01738 0.98302 1.01627 1.69862 1.28249 1.20236 1.44064 0.85018 0.79463 0.78156 0.76781 1.18361 1.22418 1.22241 1.23856 0.98552 0.99895 0.96518 1.20487 0.92541 0.97649 1.02639 0.86106 0.91090 0.90790 0.81229 0.81907 0.90014 0.88469 0.89068 0.90825 0.86446 0.93583 0.89953 0.79840 0.94120 0.93201 0.86256 0.85350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.81 113.37 1.11 1.20 16 2 O -0.33 -5.55 10.49 -92.52 -0.97 -6.52 16 3 C 0.14 2.54 6.68 22.46 0.15 2.69 16 4 C -0.17 -2.34 8.81 22.44 0.20 -2.14 16 5 C 0.00 -0.02 6.31 22.27 0.14 0.12 16 6 Cl -0.04 -0.54 28.95 -2.72 -0.08 -0.62 16 7 C -0.12 -2.05 7.34 22.56 0.17 -1.88 16 8 C -0.08 -1.92 5.23 -20.10 -0.11 -2.03 16 9 C 0.55 17.34 7.35 86.79 0.64 17.98 16 10 O -0.58 -24.47 16.39 -3.87 -0.06 -24.53 16 11 N -0.59 -15.90 3.08 -823.06 -2.54 -18.44 16 12 C 0.06 0.91 7.56 127.77 0.97 1.87 16 13 C 0.13 4.25 4.10 45.52 0.19 4.43 16 14 C -0.16 -5.11 7.28 31.12 0.23 -4.88 16 15 C 0.15 5.80 4.56 45.52 0.21 6.01 16 16 N -0.72 -37.02 5.31 -320.43 -1.70 -38.72 16 17 C -0.24 -13.26 9.97 84.04 0.84 -12.42 16 18 H 0.09 4.42 7.83 -2.91 -0.02 4.40 16 19 C -0.08 -4.76 5.50 84.86 0.47 -4.29 16 20 N -0.97 -61.58 13.06 21.65 0.28 -61.30 16 21 Si 0.98 46.58 29.55 68.60 2.03 48.61 16 22 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 23 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 24 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 25 C -0.15 -4.74 7.35 31.12 0.23 -4.51 16 26 C -0.11 -2.70 9.57 22.64 0.22 -2.48 16 27 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.07 0.33 7.66 -2.39 -0.02 0.31 16 29 H 0.07 0.30 7.66 -2.39 -0.02 0.28 16 30 H 0.17 1.32 6.28 -2.91 -0.02 1.30 16 31 H 0.16 2.31 5.33 -2.91 -0.02 2.29 16 32 H 0.08 1.00 6.91 -2.39 -0.02 0.98 16 33 H 0.10 1.27 6.18 -2.39 -0.01 1.25 16 34 H 0.09 1.20 5.80 -2.39 -0.01 1.18 16 35 H 0.07 3.23 7.21 -2.39 -0.02 3.21 16 36 H 0.12 2.73 6.63 -2.39 -0.02 2.71 16 37 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.08 2.88 8.10 -2.39 -0.02 2.87 16 39 H 0.37 21.04 7.90 -92.71 -0.73 20.31 16 40 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 41 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.12 2.83 6.98 -2.39 -0.02 2.81 16 43 H 0.13 3.43 8.05 -2.91 -0.02 3.41 16 Total: -1.00 -76.58 366.82 2.92 -73.66 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: 0.33 Total: 28.20 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: 5.64 Total: -0.33 kcal Atomic # 7 Polarization: -114.50 SS G_CDS: -3.96 Total: -118.46 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -1.03 Total: -31.05 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -0.08 Total: -0.62 kcal Total: -76.58 2.92 -73.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999592886.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.142 kcal (2) G-P(sol) polarization free energy of solvation -76.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds