Wall clock time and date at job start Tue Mar 31 2020 21:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35735 * 117.00152 * 2 1 4 4 C 1.38970 * 119.91373 * 359.96785 * 3 2 1 5 5 C 1.37710 * 120.10185 * 179.70189 * 4 3 2 6 6 C 1.39742 * 119.93193 * 0.60559 * 5 4 3 7 7 C 1.47606 * 120.08513 * 179.69922 * 6 5 4 8 8 O 1.21578 * 119.99553 * 230.79175 * 7 6 5 9 9 N 1.34777 * 120.00124 * 50.78755 * 7 6 5 10 10 C 1.46924 * 120.63040 * 356.18894 * 9 7 6 11 11 C 1.53196 * 108.77671 * 126.41164 * 10 9 7 12 12 C 1.53039 * 109.30986 * 54.63492 * 11 10 9 13 13 C 1.53043 * 109.53955 * 298.63440 * 12 11 10 14 14 H 1.08998 * 109.49996 * 301.38603 * 13 12 11 15 15 N 1.46504 * 109.50153 * 181.31453 * 13 12 11 16 16 C 1.36940 * 119.99896 * 154.99631 * 15 13 12 17 17 H 1.07996 * 120.00144 * 0.02562 * 16 15 13 18 18 C 1.38806 * 119.99562 * 180.02562 * 16 15 13 19 19 N 1.31619 * 120.00013 * 179.72645 * 18 16 15 20 20 Si 1.86803 * 120.00468 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47382 * 89.99488 * 20 18 16 22 22 H 1.48502 * 109.46991 * 209.99892 * 20 18 16 23 23 H 1.48505 * 109.46763 * 329.99304 * 20 18 16 24 24 C 1.46925 * 120.62892 * 176.20870 * 9 7 6 25 25 C 1.39721 * 119.83230 * 359.41929 * 6 5 4 26 26 C 1.37826 * 119.89263 * 0.27726 * 25 6 5 27 27 Cl 1.73601 * 119.96251 * 179.97438 * 26 25 6 28 28 H 1.08997 * 109.46423 * 60.00638 * 1 2 3 29 29 H 1.08993 * 109.47189 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46928 * 300.00673 * 1 2 3 31 31 H 1.07998 * 119.95115 * 0.02562 * 4 3 2 32 32 H 1.08001 * 120.03903 * 180.32574 * 5 4 3 33 33 H 1.08998 * 109.58918 * 6.62665 * 10 9 7 34 34 H 1.08997 * 109.70228 * 246.27090 * 10 9 7 35 35 H 1.09001 * 109.49638 * 294.69106 * 11 10 9 36 36 H 1.08993 * 109.49762 * 174.58088 * 11 10 9 37 37 H 1.09000 * 109.46197 * 178.61724 * 12 11 10 38 38 H 1.09000 * 109.45017 * 58.64697 * 12 11 10 39 39 H 0.97002 * 119.99777 * 335.00458 * 15 13 12 40 40 H 0.96995 * 120.00416 * 179.97438 * 19 18 16 41 41 H 1.09006 * 109.58373 * 113.79743 * 24 9 7 42 42 H 1.09000 * 109.58489 * 353.37797 * 24 9 7 43 43 H 1.07993 * 120.05740 * 180.30341 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.2867 2.3738 -0.0007 5 6 1.9079 3.6028 0.0055 6 6 3.3032 3.6789 -0.0003 7 6 3.9725 4.9945 -0.0004 8 8 4.8378 5.2361 -0.8195 9 7 3.6243 5.9278 0.9074 10 6 2.5240 5.6819 1.8495 11 6 3.0332 5.9180 3.2749 12 6 3.6405 7.3196 3.3697 13 6 4.8264 7.4296 2.4087 14 1 5.5696 6.6729 2.6597 15 7 5.4266 8.7612 2.5229 16 6 6.7412 8.9507 2.1895 17 1 7.3354 8.1186 1.8419 18 6 7.3098 10.2122 2.2982 19 7 8.5748 10.3933 1.9829 20 14 6.2821 11.6514 2.9000 21 1 6.3855 11.7497 4.3781 22 1 6.7808 12.9074 2.2842 23 1 4.8631 11.4412 2.5158 24 6 4.3375 7.2106 0.9735 25 6 4.0632 2.5065 -0.0001 26 6 3.4342 1.2801 0.0000 27 17 4.3767 -0.1778 -0.0004 28 1 -0.3632 0.5137 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 0.2083 2.3147 -0.0008 32 1 1.3173 4.5070 0.0103 33 1 2.1809 4.6521 1.7500 34 1 1.7001 6.3635 1.6382 35 1 3.7931 5.1752 3.5175 36 1 2.2034 5.8330 3.9764 37 1 3.9815 7.4994 4.3893 38 1 2.8869 8.0605 3.1028 39 1 4.8927 9.5087 2.8348 40 1 8.9721 11.2749 2.0585 41 1 3.6631 8.0187 0.6898 42 1 5.1911 7.1894 0.2958 43 1 5.1418 2.5610 0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000873848.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:04 Heat of formation + Delta-G solvation = -28.554302 kcal Electronic energy + Delta-G solvation = -26875.223355 eV Core-core repulsion = 22947.377343 eV Total energy + Delta-G solvation = -3927.846012 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.93284 -39.87846 -37.89216 -37.18424 -36.57550 -34.65941 -32.43464 -31.48552 -31.30493 -30.81151 -28.82178 -27.82059 -25.55689 -23.94775 -23.30182 -22.87289 -21.74239 -20.55066 -19.39222 -18.58976 -17.61277 -17.46629 -16.92165 -16.32204 -15.94241 -15.28858 -15.19997 -14.69002 -14.62863 -14.46106 -14.27599 -14.02117 -13.76929 -13.57846 -13.28919 -12.98433 -12.72449 -12.62590 -12.46658 -12.40561 -11.93444 -11.77212 -11.58363 -11.40998 -11.19771 -11.13545 -10.94632 -10.75574 -10.65984 -10.32955 -9.92598 -9.79066 -9.59343 -9.32180 -9.12546 -8.59311 -8.42263 -7.31689 -5.78137 -3.15930 0.61430 0.74933 1.84273 2.65472 2.70128 3.01886 3.33472 3.35343 3.37542 3.44070 4.26155 4.30425 4.41519 4.56623 4.64372 4.67331 4.73573 4.80519 4.95746 5.00742 5.03274 5.12837 5.30226 5.31708 5.41946 5.42986 5.52134 5.63181 5.68666 5.77987 5.85374 5.89891 5.99150 6.04406 6.09170 6.21221 6.35043 6.60367 6.69181 6.74509 6.86902 7.52892 7.97273 8.25685 8.40485 9.17315 9.88849 10.07083 11.39805 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.021230 B = 0.002597 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.599491 B =10779.081612 C =11454.399714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.303 6.303 3 C 0.153 3.847 4 C -0.203 4.203 5 C -0.046 4.046 6 C -0.143 4.143 7 C 0.557 3.443 8 O -0.528 6.528 9 N -0.599 5.599 10 C 0.097 3.903 11 C -0.130 4.130 12 C -0.130 4.130 13 C 0.173 3.827 14 H 0.060 0.940 15 N -0.742 5.742 16 C -0.249 4.249 17 H 0.092 0.908 18 C 0.007 3.993 19 N -0.930 5.930 20 Si 0.885 3.115 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.277 1.277 24 C 0.093 3.907 25 C -0.023 4.023 26 C -0.073 4.073 27 Cl -0.051 7.051 28 H 0.059 0.941 29 H 0.104 0.896 30 H 0.060 0.940 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.362 0.638 40 H 0.260 0.740 41 H 0.062 0.938 42 H 0.096 0.904 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.096 -20.729 -0.982 30.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.215 6.215 3 C 0.106 3.894 4 C -0.222 4.222 5 C -0.065 4.065 6 C -0.147 4.147 7 C 0.344 3.656 8 O -0.404 6.404 9 N -0.332 5.332 10 C -0.026 4.026 11 C -0.168 4.168 12 C -0.168 4.168 13 C 0.062 3.938 14 H 0.078 0.922 15 N -0.384 5.384 16 C -0.378 4.378 17 H 0.110 0.890 18 C -0.189 4.189 19 N -0.577 5.577 20 Si 0.715 3.285 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.203 1.203 24 C -0.031 4.031 25 C -0.043 4.043 26 C -0.100 4.100 27 Cl -0.022 7.022 28 H 0.078 0.922 29 H 0.122 0.878 30 H 0.078 0.922 31 H 0.161 0.839 32 H 0.157 0.843 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.195 0.805 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.115 0.885 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -21.188 -20.914 -1.478 29.808 hybrid contribution -0.883 1.204 0.400 1.546 sum -22.071 -19.710 -1.078 29.610 Atomic orbital electron populations 1.23169 0.77711 1.04495 1.01708 1.86137 1.21832 1.25831 1.87701 1.18856 0.90439 0.85244 0.94906 1.21115 1.00436 0.91203 1.09468 1.21205 0.93105 0.97892 0.94278 1.19814 0.93739 0.93685 1.07438 1.18107 0.82614 0.83453 0.81381 1.90844 1.32011 1.79752 1.37824 1.48165 1.34514 1.17241 1.33263 1.22024 0.89262 1.01909 0.89402 1.21872 1.00958 0.98344 0.95658 1.21872 0.98242 0.95869 1.00841 1.20465 0.93098 0.89088 0.91132 0.92155 1.42732 1.10414 1.04954 1.80300 1.19096 0.85135 0.96066 1.37542 0.89033 1.24689 0.95815 0.97177 1.01213 1.69704 1.11343 1.22536 1.54138 0.86551 0.79842 0.83383 0.78721 1.21065 1.21712 1.20327 1.22759 0.97005 0.81678 1.01689 1.20926 1.01097 0.88415 0.93815 1.19996 0.88755 0.88983 1.12312 1.98379 1.71683 1.35026 1.97097 0.92230 0.87807 0.92188 0.83947 0.84262 0.89520 0.91286 0.91292 0.90910 0.91259 0.92137 0.80455 0.92979 0.91991 0.88537 0.83328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 101.05 0.99 1.09 16 2 O -0.30 -2.58 9.94 -18.91 -0.19 -2.77 16 3 C 0.15 1.44 6.69 -39.00 -0.26 1.18 16 4 C -0.20 -1.55 9.01 -39.50 -0.36 -1.90 16 5 C -0.05 -0.41 7.35 -39.21 -0.29 -0.70 16 6 C -0.14 -1.74 5.00 -104.96 -0.52 -2.26 16 7 C 0.56 8.77 7.22 -12.44 -0.09 8.68 16 8 O -0.53 -10.66 16.47 5.30 0.09 -10.58 16 9 N -0.60 -8.69 2.97 -173.97 -0.52 -9.21 16 10 C 0.10 1.00 5.37 -3.71 -0.02 0.98 16 11 C -0.13 -1.40 6.08 -26.61 -0.16 -1.56 16 12 C -0.13 -1.83 5.35 -26.69 -0.14 -1.97 16 13 C 0.17 3.22 2.92 -67.81 -0.20 3.02 16 14 H 0.06 1.23 8.08 -51.93 -0.42 0.81 16 15 N -0.74 -17.08 4.93 -53.31 -0.26 -17.34 16 16 C -0.25 -6.98 10.41 -15.06 -0.16 -7.13 16 17 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 18 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 19 N -0.93 -29.31 13.97 55.49 0.78 -28.54 16 20 Si 0.88 21.82 27.74 -169.99 -4.71 17.10 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 23 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16 24 C 0.09 1.66 6.01 -3.71 -0.02 1.64 16 25 C -0.02 -0.28 9.51 -39.18 -0.37 -0.65 16 26 C -0.07 -0.81 6.33 -39.42 -0.25 -1.05 16 27 Cl -0.05 -0.55 28.49 -51.86 -1.48 -2.03 16 28 H 0.06 0.19 7.65 -51.93 -0.40 -0.21 16 29 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.18 7.65 -51.93 -0.40 -0.22 16 31 H 0.14 0.65 6.28 -52.49 -0.33 0.32 16 32 H 0.14 0.98 7.07 -52.49 -0.37 0.61 16 33 H 0.09 0.74 4.56 -51.93 -0.24 0.50 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.36 8.10 5.66 -40.82 -0.23 7.87 16 40 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.10 2.09 7.02 -51.93 -0.36 1.73 16 43 H 0.15 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 363.19 15.07 5.47 5.47 Total: -1.00 -34.51 363.19 -8.49 -43.01 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -5.72 Total: 5.40 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -1.95 Total: -0.52 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: 0.00 Total: -55.09 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: -0.10 Total: -13.35 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.71 Total: 17.10 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.48 Total: -2.03 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.51 -8.49 -43.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000873848.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.452 kcal (2) G-P(sol) polarization free energy of solvation -34.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds