Wall clock time and date at job start Tue Mar 31 2020 21:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35735 * 117.00152 * 2 1 4 4 C 1.38970 * 119.91373 * 359.96785 * 3 2 1 5 5 C 1.37710 * 120.10185 * 179.70189 * 4 3 2 6 6 C 1.39742 * 119.93193 * 0.60559 * 5 4 3 7 7 C 1.47606 * 120.08513 * 179.69922 * 6 5 4 8 8 O 1.21578 * 119.99553 * 230.79175 * 7 6 5 9 9 N 1.34777 * 120.00124 * 50.78755 * 7 6 5 10 10 C 1.46924 * 120.63040 * 356.18894 * 9 7 6 11 11 C 1.53196 * 108.77671 * 126.41164 * 10 9 7 12 12 C 1.53039 * 109.30986 * 54.63492 * 11 10 9 13 13 C 1.53043 * 109.53955 * 298.63440 * 12 11 10 14 14 H 1.08998 * 109.49996 * 301.38603 * 13 12 11 15 15 N 1.46504 * 109.50153 * 181.31453 * 13 12 11 16 16 C 1.36940 * 119.99896 * 154.99631 * 15 13 12 17 17 H 1.07996 * 120.00144 * 0.02562 * 16 15 13 18 18 C 1.38806 * 119.99562 * 180.02562 * 16 15 13 19 19 N 1.31619 * 120.00013 * 179.72645 * 18 16 15 20 20 Si 1.86803 * 120.00468 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47382 * 89.99488 * 20 18 16 22 22 H 1.48502 * 109.46991 * 209.99892 * 20 18 16 23 23 H 1.48505 * 109.46763 * 329.99304 * 20 18 16 24 24 C 1.46925 * 120.62892 * 176.20870 * 9 7 6 25 25 C 1.39721 * 119.83230 * 359.41929 * 6 5 4 26 26 C 1.37826 * 119.89263 * 0.27726 * 25 6 5 27 27 Cl 1.73601 * 119.96251 * 179.97438 * 26 25 6 28 28 H 1.08997 * 109.46423 * 60.00638 * 1 2 3 29 29 H 1.08993 * 109.47189 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46928 * 300.00673 * 1 2 3 31 31 H 1.07998 * 119.95115 * 0.02562 * 4 3 2 32 32 H 1.08001 * 120.03903 * 180.32574 * 5 4 3 33 33 H 1.08998 * 109.58918 * 6.62665 * 10 9 7 34 34 H 1.08997 * 109.70228 * 246.27090 * 10 9 7 35 35 H 1.09001 * 109.49638 * 294.69106 * 11 10 9 36 36 H 1.08993 * 109.49762 * 174.58088 * 11 10 9 37 37 H 1.09000 * 109.46197 * 178.61724 * 12 11 10 38 38 H 1.09000 * 109.45017 * 58.64697 * 12 11 10 39 39 H 0.97002 * 119.99777 * 335.00458 * 15 13 12 40 40 H 0.96995 * 120.00416 * 179.97438 * 19 18 16 41 41 H 1.09006 * 109.58373 * 113.79743 * 24 9 7 42 42 H 1.09000 * 109.58489 * 353.37797 * 24 9 7 43 43 H 1.07993 * 120.05740 * 180.30341 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.2867 2.3738 -0.0007 5 6 1.9079 3.6028 0.0055 6 6 3.3032 3.6789 -0.0003 7 6 3.9725 4.9945 -0.0004 8 8 4.8378 5.2361 -0.8195 9 7 3.6243 5.9278 0.9074 10 6 2.5240 5.6819 1.8495 11 6 3.0332 5.9180 3.2749 12 6 3.6405 7.3196 3.3697 13 6 4.8264 7.4296 2.4087 14 1 5.5696 6.6729 2.6597 15 7 5.4266 8.7612 2.5229 16 6 6.7412 8.9507 2.1895 17 1 7.3354 8.1186 1.8419 18 6 7.3098 10.2122 2.2982 19 7 8.5748 10.3933 1.9829 20 14 6.2821 11.6514 2.9000 21 1 6.3855 11.7497 4.3781 22 1 6.7808 12.9074 2.2842 23 1 4.8631 11.4412 2.5158 24 6 4.3375 7.2106 0.9735 25 6 4.0632 2.5065 -0.0001 26 6 3.4342 1.2801 0.0000 27 17 4.3767 -0.1778 -0.0004 28 1 -0.3632 0.5137 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 0.2083 2.3147 -0.0008 32 1 1.3173 4.5070 0.0103 33 1 2.1809 4.6521 1.7500 34 1 1.7001 6.3635 1.6382 35 1 3.7931 5.1752 3.5175 36 1 2.2034 5.8330 3.9764 37 1 3.9815 7.4994 4.3893 38 1 2.8869 8.0605 3.1028 39 1 4.8927 9.5087 2.8348 40 1 8.9721 11.2749 2.0585 41 1 3.6631 8.0187 0.6898 42 1 5.1911 7.1894 0.2958 43 1 5.1418 2.5610 0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000873848.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:04 Heat of formation + Delta-G solvation = -52.549577 kcal Electronic energy + Delta-G solvation = -26876.263869 eV Core-core repulsion = 22947.377343 eV Total energy + Delta-G solvation = -3928.886525 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.84080 -40.81308 -38.95816 -38.23336 -37.42463 -36.32957 -34.05536 -32.92979 -32.19843 -31.75867 -30.25339 -28.35936 -26.65752 -25.68574 -24.15325 -23.75821 -23.08933 -21.89801 -20.55834 -19.58671 -19.23338 -18.57558 -17.72162 -17.14443 -16.84260 -16.70029 -16.25675 -16.12512 -15.72175 -15.61525 -15.22076 -15.06833 -14.94375 -14.75643 -14.36677 -14.20728 -14.05727 -13.85059 -13.75692 -13.34015 -13.00377 -12.97099 -12.59742 -12.52474 -12.20387 -12.18727 -12.10608 -11.99371 -11.90796 -11.84951 -11.69872 -11.36381 -11.15557 -10.96890 -10.08426 -9.87369 -9.34230 -9.24745 -8.04657 -5.41251 -0.18939 -0.01031 1.02243 1.36705 1.42848 1.49668 1.55503 1.91132 2.16342 2.44713 2.47327 3.25882 3.36356 3.52764 3.63094 3.76890 3.96001 3.96848 4.05702 4.12419 4.22829 4.26982 4.35751 4.39547 4.47813 4.56518 4.60287 4.66447 4.76358 4.82035 4.84936 4.90936 4.96404 5.02460 5.11691 5.14313 5.34467 5.36587 5.44864 5.47867 5.73959 6.18832 6.19366 6.36750 7.03162 7.06251 7.76733 7.99401 9.17199 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.021230 B = 0.002597 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.599491 B =10779.081612 C =11454.399714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.319 6.319 3 C 0.160 3.840 4 C -0.185 4.185 5 C -0.032 4.032 6 C -0.161 4.161 7 C 0.553 3.447 8 O -0.590 6.590 9 N -0.595 5.595 10 C 0.091 3.909 11 C -0.123 4.123 12 C -0.121 4.121 13 C 0.169 3.831 14 H 0.027 0.973 15 N -0.742 5.742 16 C -0.238 4.238 17 H 0.043 0.957 18 C -0.066 4.066 19 N -0.986 5.986 20 Si 0.965 3.035 21 H -0.274 1.274 22 H -0.298 1.298 23 H -0.244 1.244 24 C 0.105 3.895 25 C -0.037 4.037 26 C -0.089 4.089 27 Cl -0.060 7.060 28 H 0.074 0.926 29 H 0.118 0.882 30 H 0.079 0.921 31 H 0.186 0.814 32 H 0.169 0.831 33 H 0.113 0.887 34 H 0.102 0.898 35 H 0.055 0.945 36 H 0.117 0.883 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.371 0.629 40 H 0.259 0.741 41 H 0.075 0.925 42 H 0.042 0.958 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.237 -21.116 0.541 35.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.231 6.231 3 C 0.112 3.888 4 C -0.203 4.203 5 C -0.050 4.050 6 C -0.164 4.164 7 C 0.342 3.658 8 O -0.472 6.472 9 N -0.326 5.326 10 C -0.030 4.030 11 C -0.162 4.162 12 C -0.159 4.159 13 C 0.060 3.940 14 H 0.046 0.954 15 N -0.386 5.386 16 C -0.369 4.369 17 H 0.061 0.939 18 C -0.258 4.258 19 N -0.636 5.636 20 Si 0.791 3.209 21 H -0.200 1.200 22 H -0.224 1.224 23 H -0.168 1.168 24 C -0.020 4.020 25 C -0.057 4.057 26 C -0.116 4.116 27 Cl -0.031 7.031 28 H 0.093 0.907 29 H 0.136 0.864 30 H 0.098 0.902 31 H 0.203 0.797 32 H 0.186 0.814 33 H 0.130 0.870 34 H 0.120 0.880 35 H 0.074 0.926 36 H 0.135 0.865 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.206 0.794 40 H 0.068 0.932 41 H 0.093 0.907 42 H 0.061 0.939 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -27.426 -21.365 0.082 34.765 hybrid contribution 1.004 1.111 -0.109 1.501 sum -26.422 -20.254 -0.027 33.292 Atomic orbital electron populations 1.23556 0.75179 1.06217 1.03330 1.86141 1.24434 1.25409 1.87138 1.18998 0.89828 0.86503 0.93505 1.21504 1.02240 0.89515 1.07050 1.21463 0.91281 0.99717 0.92577 1.19502 0.95263 0.91110 1.10561 1.18750 0.81819 0.84700 0.80508 1.90806 1.34916 1.80987 1.40459 1.48201 1.35043 1.15606 1.33785 1.22455 0.88264 1.04433 0.87807 1.21890 1.01893 0.95439 0.96970 1.21805 0.96275 0.98898 0.98934 1.20646 0.94352 0.86073 0.92976 0.95435 1.42637 1.08636 1.07048 1.80278 1.18947 0.87107 0.94715 1.36151 0.93932 1.25655 0.97261 1.00710 1.02142 1.69922 1.13927 1.23268 1.56458 0.85269 0.79383 0.78003 0.78217 1.19981 1.22447 1.16771 1.22243 0.95962 0.84120 0.99705 1.20764 1.00365 0.89363 0.95173 1.20036 0.89828 0.88151 1.13600 1.98368 1.72201 1.35294 1.97208 0.90716 0.86359 0.90246 0.79660 0.81401 0.86958 0.87997 0.92648 0.86498 0.91310 0.90022 0.79429 0.93244 0.90729 0.93883 0.85509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 9.81 113.37 1.11 1.15 16 2 O -0.32 -4.44 9.94 -90.59 -0.90 -5.34 16 3 C 0.16 2.56 6.69 22.65 0.15 2.71 16 4 C -0.18 -1.92 9.01 22.32 0.20 -1.72 16 5 C -0.03 -0.45 7.35 22.51 0.17 -0.28 16 6 C -0.16 -3.80 5.00 -20.08 -0.10 -3.90 16 7 C 0.55 18.01 7.22 86.72 0.63 18.64 16 8 O -0.59 -26.05 16.47 -3.96 -0.07 -26.12 16 9 N -0.59 -16.98 2.97 -822.58 -2.44 -19.43 16 10 C 0.09 1.50 5.37 86.36 0.46 1.97 16 11 C -0.12 -2.17 6.08 30.67 0.19 -1.99 16 12 C -0.12 -3.06 5.35 30.62 0.16 -2.89 16 13 C 0.17 6.40 2.92 45.07 0.13 6.53 16 14 H 0.03 1.21 8.08 -2.39 -0.02 1.19 16 15 N -0.74 -34.58 4.93 -322.57 -1.59 -36.17 16 16 C -0.24 -14.08 10.41 84.03 0.88 -13.21 16 17 H 0.04 2.86 8.06 -2.91 -0.02 2.84 16 18 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 19 N -0.99 -65.23 13.97 21.65 0.30 -64.93 16 20 Si 0.97 45.33 27.74 68.60 1.90 47.23 16 21 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 22 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 23 H -0.24 -9.99 6.52 99.48 0.65 -9.34 16 24 C 0.11 3.89 6.01 86.36 0.52 4.41 16 25 C -0.04 -0.92 9.51 22.53 0.21 -0.71 16 26 C -0.09 -1.92 6.33 22.37 0.14 -1.78 16 27 Cl -0.06 -1.32 28.49 -2.72 -0.08 -1.40 16 28 H 0.07 0.09 7.65 -2.39 -0.02 0.08 16 29 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 30 H 0.08 0.03 7.65 -2.39 -0.02 0.01 16 31 H 0.19 0.37 6.28 -2.91 -0.02 0.35 16 32 H 0.17 1.40 7.07 -2.91 -0.02 1.38 16 33 H 0.11 1.35 4.56 -2.39 -0.01 1.34 16 34 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.37 15.91 5.66 -92.71 -0.52 15.39 16 40 H 0.26 16.20 8.31 -92.71 -0.77 15.43 16 41 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 42 H 0.04 2.04 7.02 -2.39 -0.02 2.02 16 43 H 0.13 3.57 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -85.09 363.19 2.91 -82.18 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: 0.46 Total: 18.57 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: 5.32 Total: 5.40 kcal Atomic # 7 Polarization: -116.79 SS G_CDS: -3.73 Total: -120.53 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -0.97 Total: -31.46 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.90 Total: 47.23 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.08 Total: -1.40 kcal Total: -85.09 2.91 -82.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000873848.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.629 kcal (2) G-P(sol) polarization free energy of solvation -85.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds