Wall clock time and date at job start Tue Mar 31 2020 20:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21284 * 119.99757 * 2 1 4 4 N 1.34778 * 120.00266 * 180.02562 * 2 1 3 5 5 C 1.38898 * 119.99961 * 180.02562 * 4 2 1 6 6 N 1.29515 * 125.27073 * 179.72113 * 5 4 2 7 7 C 1.33630 * 115.66983 * 179.78887 * 6 5 4 8 8 C 1.47207 * 122.50309 * 180.24007 * 7 6 5 9 9 O 1.21643 * 120.00038 * 180.27886 * 8 7 6 10 10 N 1.34776 * 119.99748 * 0.28447 * 8 7 6 11 11 C 1.46500 * 119.99783 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.50054 * 34.99698 * 11 10 8 13 13 C 1.53047 * 109.49693 * 155.06351 * 11 10 8 14 14 C 1.53033 * 109.53721 * 181.31446 * 13 11 10 15 15 C 1.53193 * 109.31444 * 298.63545 * 14 13 11 16 16 N 1.46922 * 108.77750 * 54.63451 * 15 14 13 17 17 C 1.36934 * 120.63256 * 126.38929 * 16 15 14 18 18 H 1.07999 * 120.00082 * 332.61062 * 17 16 15 19 19 C 1.38811 * 119.99965 * 152.59913 * 17 16 15 20 20 N 1.31620 * 119.99783 * 159.37005 * 19 17 16 21 21 Si 1.86803 * 120.00335 * 339.37766 * 19 17 16 22 22 H 1.48502 * 109.47186 * 92.91303 * 21 19 17 23 23 H 1.48498 * 109.47001 * 212.91453 * 21 19 17 24 24 H 1.48501 * 109.46844 * 332.91430 * 21 19 17 25 25 C 1.46936 * 118.76132 * 306.41403 * 16 15 14 26 26 C 1.34894 * 114.99912 * 0.50068 * 7 6 5 27 27 S 1.70982 * 109.19282 * 359.73845 * 26 7 6 28 28 H 1.08999 * 109.47099 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47392 * 299.99787 * 1 2 3 30 30 H 1.09001 * 109.47319 * 59.99855 * 1 2 3 31 31 H 0.96997 * 120.00121 * 0.02562 * 4 2 1 32 32 H 0.96998 * 119.99989 * 359.97438 * 10 8 7 33 33 H 1.08996 * 109.45494 * 301.33615 * 13 11 10 34 34 H 1.09001 * 109.46072 * 61.29428 * 13 11 10 35 35 H 1.09004 * 109.50010 * 58.58392 * 14 13 11 36 36 H 1.09002 * 109.49838 * 178.65010 * 14 13 11 37 37 H 1.09000 * 109.58839 * 174.42502 * 15 14 13 38 38 H 1.09004 * 109.58641 * 294.70311 * 15 14 13 39 39 H 0.97002 * 120.00133 * 180.02562 * 20 19 17 40 40 H 1.08993 * 109.56212 * 293.77987 * 25 16 15 41 41 H 1.09007 * 109.60771 * 173.35880 * 25 16 15 42 42 H 1.08002 * 125.40332 * 179.70051 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5699 -1.1671 0.0000 6 7 4.3178 -2.2245 0.0047 7 6 5.6353 -2.0015 -0.0001 8 6 6.6224 -3.0937 -0.0010 9 8 7.8118 -2.8386 -0.0004 10 7 6.2082 -4.3762 -0.0026 11 6 7.1905 -5.4631 -0.0029 12 1 8.0584 -5.1693 0.5873 13 6 6.5619 -6.7199 0.6036 14 6 7.5973 -7.8464 0.6338 15 6 8.0374 -8.1686 -0.7977 16 7 8.5090 -6.9326 -1.4370 17 6 9.7480 -6.8761 -2.0174 18 1 10.5410 -7.5166 -1.6608 19 6 9.9845 -5.9958 -3.0643 20 7 11.2165 -5.6353 -3.3553 21 14 8.5545 -5.3226 -4.0599 22 1 8.1140 -4.0281 -3.4808 23 1 8.9846 -5.1151 -5.4660 24 1 7.4280 -6.2896 -4.0244 25 6 7.6265 -5.7578 -1.4416 26 6 5.9935 -0.7010 0.0014 27 16 4.5859 0.2696 0.0020 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.6959 -2.0072 -0.0013 32 1 5.2598 -4.5796 -0.0028 33 1 6.2289 -6.5053 1.6190 34 1 5.7086 -7.0271 -0.0010 35 1 8.4618 -7.5304 1.2177 36 1 7.1563 -8.7338 1.0878 37 1 8.8454 -8.8999 -0.7758 38 1 7.1938 -8.5729 -1.3571 39 1 11.3818 -5.0199 -4.0866 40 1 6.7490 -5.9630 -2.0547 41 1 8.1632 -4.8987 -1.8441 42 1 7.0083 -0.3315 0.0027 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007745649.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:21 Heat of formation + Delta-G solvation = 4.618648 kcal Electronic energy + Delta-G solvation = -26857.409240 eV Core-core repulsion = 22965.338172 eV Total energy + Delta-G solvation = -3892.071067 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.90648 -40.17693 -38.76487 -37.39613 -35.36444 -34.25676 -32.64978 -31.29727 -30.65771 -29.62266 -29.20758 -25.57818 -25.24497 -23.28749 -22.45107 -21.91876 -21.29396 -19.98537 -19.40655 -18.73331 -17.46523 -17.20965 -16.78604 -16.56418 -16.42238 -15.55653 -15.27238 -15.01870 -14.74476 -14.22680 -14.07839 -13.89163 -13.65745 -13.40038 -13.29921 -13.14950 -12.88570 -12.73227 -12.37719 -12.18617 -12.10617 -11.55462 -11.41043 -11.05722 -10.72036 -10.66621 -10.56655 -10.24042 -10.20293 -10.15042 -9.74281 -9.71312 -9.62137 -9.40366 -8.83837 -8.57066 -8.41532 -6.91586 -5.88118 -3.24120 0.38065 0.74937 1.52268 1.54360 2.11551 2.21820 3.42427 3.45885 3.53200 3.55670 3.56458 3.97914 4.23972 4.49160 4.61440 4.72469 5.02508 5.08429 5.15803 5.18892 5.26718 5.31124 5.40606 5.53541 5.55072 5.76751 5.86624 6.00713 6.08366 6.25311 6.29871 6.31589 6.48681 6.60836 6.67437 6.70044 6.84788 6.98690 7.20429 7.23885 7.83330 8.02526 8.39815 8.48436 8.99819 9.79085 10.15160 11.27737 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.016082 B = 0.003026 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.624979 B = 9251.422252 C = 9924.086507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.511 3.489 3 O -0.511 6.511 4 N -0.620 5.620 5 C 0.243 3.757 6 N -0.475 5.475 7 C 0.033 3.967 8 C 0.585 3.415 9 O -0.521 6.521 10 N -0.707 5.707 11 C 0.125 3.875 12 H 0.093 0.907 13 C -0.115 4.115 14 C -0.132 4.132 15 C 0.145 3.855 16 N -0.601 5.601 17 C -0.263 4.263 18 H 0.087 0.913 19 C 0.028 3.972 20 N -0.904 5.904 21 Si 0.879 3.121 22 H -0.287 1.287 23 H -0.303 1.303 24 H -0.272 1.272 25 C 0.120 3.880 26 C -0.258 4.258 27 S 0.271 5.729 28 H 0.084 0.916 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.426 0.574 32 H 0.402 0.598 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.023 0.977 39 H 0.262 0.738 40 H 0.024 0.976 41 H 0.079 0.921 42 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.412 9.362 9.912 28.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.298 3.702 3 O -0.385 6.385 4 N -0.272 5.272 5 C -0.127 4.127 6 N -0.199 5.199 7 C -0.102 4.102 8 C 0.367 3.633 9 O -0.396 6.396 10 N -0.357 5.357 11 C 0.019 3.981 12 H 0.111 0.889 13 C -0.154 4.154 14 C -0.172 4.172 15 C 0.019 3.981 16 N -0.325 5.325 17 C -0.391 4.391 18 H 0.105 0.895 19 C -0.171 4.171 20 N -0.547 5.547 21 Si 0.709 3.291 22 H -0.214 1.214 23 H -0.231 1.231 24 H -0.197 1.197 25 C -0.006 4.006 26 C -0.401 4.401 27 S 0.522 5.478 28 H 0.103 0.897 29 H 0.124 0.876 30 H 0.125 0.875 31 H 0.265 0.735 32 H 0.237 0.763 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.041 0.959 39 H 0.072 0.928 40 H 0.042 0.958 41 H 0.097 0.903 42 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -24.481 10.903 9.797 28.534 hybrid contribution -0.846 -0.861 -0.704 1.398 sum -25.328 10.042 9.092 28.723 Atomic orbital electron populations 1.21817 0.88544 1.05369 1.06436 1.21357 0.91695 0.82139 0.74977 1.90703 1.69512 1.30651 1.47663 1.42941 1.01547 1.11507 1.71158 1.24307 0.89763 0.93912 1.04676 1.67009 1.03352 1.29490 1.20010 1.19975 0.88484 0.93901 1.07793 1.17130 0.86835 0.82082 0.77222 1.90895 1.15678 1.83507 1.49523 1.45932 1.10760 1.05155 1.73898 1.21818 0.91289 0.84870 1.00107 0.88918 1.21671 0.98725 0.95056 0.99902 1.22002 0.98443 0.96873 0.99864 1.20980 0.97514 0.89082 0.90477 1.44289 1.16608 1.05657 1.65952 1.18885 0.85947 1.22937 1.11301 0.89542 1.25251 0.95781 0.98376 0.97691 1.69833 1.19032 1.34689 1.31144 0.86986 0.83774 0.78862 0.79436 1.21449 1.23127 1.19686 1.21697 0.94005 0.91770 0.93164 1.26958 1.07873 0.97700 1.07595 1.84825 0.91138 1.05306 1.66516 0.89660 0.87559 0.87545 0.73483 0.76301 0.92414 0.92080 0.91611 0.92132 0.91642 0.95922 0.92770 0.95800 0.90301 0.79104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.28 10.39 36.00 0.37 0.09 16 2 C 0.51 3.35 7.90 -10.99 -0.09 3.26 16 3 O -0.51 -5.25 14.61 5.55 0.08 -5.17 16 4 N -0.62 -4.37 5.40 -11.91 -0.06 -4.44 16 5 C 0.24 2.71 8.36 -87.54 -0.73 1.98 16 6 N -0.48 -6.34 10.11 -10.51 -0.11 -6.45 16 7 C 0.03 0.52 6.66 -84.63 -0.56 -0.05 16 8 C 0.58 11.13 7.76 -12.62 -0.10 11.03 16 9 O -0.52 -11.99 16.32 5.24 0.09 -11.91 16 10 N -0.71 -12.23 5.08 -54.83 -0.28 -12.51 16 11 C 0.12 2.42 2.60 -67.81 -0.18 2.24 16 12 H 0.09 2.04 7.58 -51.93 -0.39 1.64 16 13 C -0.12 -1.78 5.35 -26.69 -0.14 -1.93 16 14 C -0.13 -2.13 6.08 -26.61 -0.16 -2.29 16 15 C 0.15 2.87 6.52 -3.71 -0.02 2.85 16 16 N -0.60 -14.93 2.77 -172.31 -0.48 -15.40 16 17 C -0.26 -7.67 10.03 -15.06 -0.15 -7.82 16 18 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 19 C 0.03 0.87 5.23 -17.43 -0.09 0.78 16 20 N -0.90 -29.10 13.97 55.49 0.78 -28.33 16 21 Si 0.88 24.00 24.34 -169.99 -4.14 19.86 16 22 H -0.29 -7.93 6.62 56.52 0.37 -7.56 16 23 H -0.30 -8.28 7.11 56.52 0.40 -7.88 16 24 H -0.27 -7.18 6.64 56.52 0.38 -6.80 16 25 C 0.12 2.84 3.78 -3.71 -0.01 2.83 16 26 C -0.26 -3.61 10.55 29.55 0.31 -3.29 16 27 S 0.27 3.08 20.29 -107.50 -2.18 0.90 16 28 H 0.08 -0.05 7.91 -51.93 -0.41 -0.46 16 29 H 0.11 0.11 8.14 -51.93 -0.42 -0.32 16 30 H 0.11 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.43 1.71 8.66 -40.82 -0.35 1.35 16 32 H 0.40 5.82 8.08 -40.82 -0.33 5.49 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 1.28 7.93 -51.93 -0.41 0.87 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.26 8.04 8.31 -40.82 -0.34 7.71 16 40 H 0.02 0.56 7.07 -51.93 -0.37 0.19 16 41 H 0.08 2.16 4.50 -51.92 -0.23 1.93 16 42 H 0.19 2.57 7.99 -52.49 -0.42 2.15 16 LS Contribution 357.54 15.07 5.39 5.39 Total: -1.00 -38.28 357.54 -7.96 -46.24 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -5.49 Total: 2.14 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: -1.56 Total: 9.68 kcal Atomic # 7 Polarization: -66.98 SS G_CDS: -0.15 Total: -67.13 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: 0.17 Total: -17.08 kcal Atomic # 14 Polarization: 24.00 SS G_CDS: -4.14 Total: 19.86 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -2.18 Total: 0.90 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -38.28 -7.96 -46.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007745649.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.860 kcal (2) G-P(sol) polarization free energy of solvation -38.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds