Wall clock time and date at job start Tue Mar 31 2020 20:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21284 * 119.99757 * 2 1 4 4 N 1.34778 * 120.00266 * 180.02562 * 2 1 3 5 5 C 1.38898 * 119.99961 * 180.02562 * 4 2 1 6 6 N 1.29515 * 125.27073 * 179.72113 * 5 4 2 7 7 C 1.33630 * 115.66983 * 179.78887 * 6 5 4 8 8 C 1.47207 * 122.50309 * 180.24007 * 7 6 5 9 9 O 1.21643 * 120.00038 * 180.27886 * 8 7 6 10 10 N 1.34776 * 119.99748 * 0.28447 * 8 7 6 11 11 C 1.46500 * 119.99783 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.50054 * 34.99698 * 11 10 8 13 13 C 1.53047 * 109.49693 * 155.06351 * 11 10 8 14 14 C 1.53033 * 109.53721 * 181.31446 * 13 11 10 15 15 C 1.53193 * 109.31444 * 298.63545 * 14 13 11 16 16 N 1.46922 * 108.77750 * 54.63451 * 15 14 13 17 17 C 1.36934 * 120.63256 * 126.38929 * 16 15 14 18 18 H 1.07999 * 120.00082 * 332.61062 * 17 16 15 19 19 C 1.38811 * 119.99965 * 152.59913 * 17 16 15 20 20 N 1.31620 * 119.99783 * 159.37005 * 19 17 16 21 21 Si 1.86803 * 120.00335 * 339.37766 * 19 17 16 22 22 H 1.48502 * 109.47186 * 92.91303 * 21 19 17 23 23 H 1.48498 * 109.47001 * 212.91453 * 21 19 17 24 24 H 1.48501 * 109.46844 * 332.91430 * 21 19 17 25 25 C 1.46936 * 118.76132 * 306.41403 * 16 15 14 26 26 C 1.34894 * 114.99912 * 0.50068 * 7 6 5 27 27 S 1.70982 * 109.19282 * 359.73845 * 26 7 6 28 28 H 1.08999 * 109.47099 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47392 * 299.99787 * 1 2 3 30 30 H 1.09001 * 109.47319 * 59.99855 * 1 2 3 31 31 H 0.96997 * 120.00121 * 0.02562 * 4 2 1 32 32 H 0.96998 * 119.99989 * 359.97438 * 10 8 7 33 33 H 1.08996 * 109.45494 * 301.33615 * 13 11 10 34 34 H 1.09001 * 109.46072 * 61.29428 * 13 11 10 35 35 H 1.09004 * 109.50010 * 58.58392 * 14 13 11 36 36 H 1.09002 * 109.49838 * 178.65010 * 14 13 11 37 37 H 1.09000 * 109.58839 * 174.42502 * 15 14 13 38 38 H 1.09004 * 109.58641 * 294.70311 * 15 14 13 39 39 H 0.97002 * 120.00133 * 180.02562 * 20 19 17 40 40 H 1.08993 * 109.56212 * 293.77987 * 25 16 15 41 41 H 1.09007 * 109.60771 * 173.35880 * 25 16 15 42 42 H 1.08002 * 125.40332 * 179.70051 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5699 -1.1671 0.0000 6 7 4.3178 -2.2245 0.0047 7 6 5.6353 -2.0015 -0.0001 8 6 6.6224 -3.0937 -0.0010 9 8 7.8118 -2.8386 -0.0004 10 7 6.2082 -4.3762 -0.0026 11 6 7.1905 -5.4631 -0.0029 12 1 8.0584 -5.1693 0.5873 13 6 6.5619 -6.7199 0.6036 14 6 7.5973 -7.8464 0.6338 15 6 8.0374 -8.1686 -0.7977 16 7 8.5090 -6.9326 -1.4370 17 6 9.7480 -6.8761 -2.0174 18 1 10.5410 -7.5166 -1.6608 19 6 9.9845 -5.9958 -3.0643 20 7 11.2165 -5.6353 -3.3553 21 14 8.5545 -5.3226 -4.0599 22 1 8.1140 -4.0281 -3.4808 23 1 8.9846 -5.1151 -5.4660 24 1 7.4280 -6.2896 -4.0244 25 6 7.6265 -5.7578 -1.4416 26 6 5.9935 -0.7010 0.0014 27 16 4.5859 0.2696 0.0020 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.6959 -2.0072 -0.0013 32 1 5.2598 -4.5796 -0.0028 33 1 6.2289 -6.5053 1.6190 34 1 5.7086 -7.0271 -0.0010 35 1 8.4618 -7.5304 1.2177 36 1 7.1563 -8.7338 1.0878 37 1 8.8454 -8.8999 -0.7758 38 1 7.1938 -8.5729 -1.3571 39 1 11.3818 -5.0199 -4.0866 40 1 6.7490 -5.9630 -2.0547 41 1 8.1632 -4.8987 -1.8441 42 1 7.0083 -0.3315 0.0027 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007745649.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:20 Heat of formation + Delta-G solvation = -26.413956 kcal Electronic energy + Delta-G solvation = -26858.754915 eV Core-core repulsion = 22965.338172 eV Total energy + Delta-G solvation = -3893.416742 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.80763 -41.21670 -40.03605 -38.96563 -36.10089 -35.98421 -34.50223 -32.61933 -31.94569 -30.88590 -30.16503 -27.23763 -26.72390 -24.57349 -23.96530 -22.87460 -22.56373 -21.47940 -20.71000 -19.72606 -18.87970 -18.35695 -17.95776 -17.88574 -17.24186 -17.10126 -16.75975 -16.34768 -15.94769 -15.54317 -15.50449 -15.23172 -15.19843 -14.79316 -14.49508 -14.41595 -14.09698 -13.88220 -13.46057 -13.40547 -13.16706 -13.15627 -12.68432 -12.60022 -12.49801 -12.24694 -11.83882 -11.76219 -11.70620 -11.39879 -11.38637 -11.21904 -11.12806 -10.84090 -10.56318 -10.26649 -9.48861 -8.96316 -8.23710 -5.53910 -0.61488 -0.14584 0.53060 0.57826 1.23637 1.26395 1.36927 1.43697 1.44669 2.07533 2.22240 2.35151 2.99076 3.16453 3.37459 3.69138 3.77377 4.00178 4.02816 4.09896 4.14686 4.31207 4.37112 4.45549 4.49227 4.64180 4.66522 4.78358 4.84666 4.87981 4.99825 5.05797 5.12665 5.14118 5.20472 5.33751 5.53095 5.70674 5.82573 6.07403 6.27519 6.53933 6.69494 6.85844 7.08910 7.57034 7.97005 8.96176 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.016082 B = 0.003026 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.624979 B = 9251.422252 C = 9924.086507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.509 3.491 3 O -0.549 6.549 4 N -0.607 5.607 5 C 0.247 3.753 6 N -0.482 5.482 7 C 0.013 3.987 8 C 0.579 3.421 9 O -0.575 6.575 10 N -0.693 5.693 11 C 0.134 3.866 12 H 0.058 0.942 13 C -0.105 4.105 14 C -0.123 4.123 15 C 0.136 3.864 16 N -0.617 5.617 17 C -0.246 4.246 18 H 0.059 0.941 19 C -0.034 4.034 20 N -0.954 5.954 21 Si 0.942 3.058 22 H -0.300 1.300 23 H -0.305 1.305 24 H -0.251 1.251 25 C 0.121 3.879 26 C -0.271 4.271 27 S 0.308 5.692 28 H 0.115 0.885 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.442 0.558 32 H 0.420 0.580 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.048 0.952 36 H 0.106 0.894 37 H 0.060 0.940 38 H 0.045 0.955 39 H 0.260 0.740 40 H 0.036 0.964 41 H 0.033 0.967 42 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.692 8.759 11.026 33.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.300 3.700 3 O -0.426 6.426 4 N -0.261 5.261 5 C -0.123 4.123 6 N -0.206 5.206 7 C -0.122 4.122 8 C 0.364 3.636 9 O -0.454 6.454 10 N -0.344 5.344 11 C 0.027 3.973 12 H 0.077 0.923 13 C -0.143 4.143 14 C -0.163 4.163 15 C 0.012 3.988 16 N -0.342 5.342 17 C -0.375 4.375 18 H 0.077 0.923 19 C -0.229 4.229 20 N -0.600 5.600 21 Si 0.772 3.228 22 H -0.228 1.228 23 H -0.233 1.233 24 H -0.175 1.175 25 C -0.006 4.006 26 C -0.415 4.415 27 S 0.561 5.439 28 H 0.133 0.867 29 H 0.137 0.863 30 H 0.134 0.866 31 H 0.285 0.715 32 H 0.258 0.742 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.067 0.933 36 H 0.124 0.876 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -29.891 10.240 10.939 33.436 hybrid contribution 0.702 -0.623 -0.956 1.339 sum -29.189 9.618 9.983 32.314 Atomic orbital electron populations 1.21933 0.84172 1.07729 1.07368 1.22422 0.93449 0.81048 0.73127 1.90680 1.70491 1.32037 1.49424 1.43173 0.99598 1.12906 1.70416 1.24604 0.91528 0.93377 1.02826 1.66953 1.02163 1.30073 1.21394 1.19598 0.89186 0.93157 1.10256 1.17647 0.86793 0.83175 0.76002 1.90862 1.18146 1.84384 1.51995 1.45758 1.11274 1.04287 1.73040 1.21502 0.91461 0.87371 0.96935 0.92323 1.21667 0.98743 0.92152 1.01768 1.21923 0.98387 0.98969 0.96984 1.21281 0.98049 0.86842 0.92620 1.44453 1.15478 1.08108 1.66175 1.18901 0.87365 1.20956 1.10323 0.92294 1.25874 0.97794 0.99836 0.99362 1.69956 1.21036 1.36686 1.32295 0.85969 0.81456 0.77928 0.77452 1.22847 1.23320 1.17526 1.21618 0.93319 0.89722 0.95918 1.27124 1.09132 0.98082 1.07152 1.84792 0.89304 1.04281 1.65568 0.86680 0.86347 0.86558 0.71481 0.74250 0.89261 0.89580 0.93288 0.87562 0.92192 0.93673 0.93085 0.94662 0.94837 0.79711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.12 10.39 71.23 0.74 0.86 16 2 C 0.51 5.07 7.90 87.65 0.69 5.76 16 3 O -0.55 -10.10 14.61 -3.04 -0.04 -10.14 16 4 N -0.61 -6.63 5.40 -309.99 -1.67 -8.31 16 5 C 0.25 5.01 8.36 179.27 1.50 6.51 16 6 N -0.48 -12.10 10.11 -187.16 -1.89 -14.00 16 7 C 0.01 0.39 6.66 40.46 0.27 0.66 16 8 C 0.58 22.54 7.76 86.60 0.67 23.21 16 9 O -0.57 -28.01 16.32 -4.17 -0.07 -28.07 16 10 N -0.69 -23.35 5.08 -445.62 -2.26 -25.61 16 11 C 0.13 5.08 2.60 45.07 0.12 5.19 16 12 H 0.06 2.65 7.58 -2.39 -0.02 2.63 16 13 C -0.11 -2.85 5.35 30.62 0.16 -2.69 16 14 C -0.12 -3.56 6.08 30.67 0.19 -3.37 16 15 C 0.14 5.10 6.52 86.36 0.56 5.66 16 16 N -0.62 -30.62 2.77 -699.08 -1.94 -32.55 16 17 C -0.25 -14.82 10.03 84.03 0.84 -13.97 16 18 H 0.06 3.80 8.06 -2.91 -0.02 3.77 16 19 C -0.03 -2.14 5.23 84.86 0.44 -1.69 16 20 N -0.95 -64.36 13.97 21.65 0.30 -64.05 16 21 Si 0.94 51.53 24.34 68.60 1.67 53.20 16 22 H -0.30 -16.91 6.62 99.48 0.66 -16.25 16 23 H -0.30 -16.51 7.11 99.48 0.71 -15.80 16 24 H -0.25 -12.69 6.64 99.48 0.66 -12.03 16 25 C 0.12 5.67 3.78 86.36 0.33 6.00 16 26 C -0.27 -7.71 10.55 67.05 0.71 -7.00 16 27 S 0.31 6.70 20.29 -56.49 -1.15 5.55 16 28 H 0.11 -0.73 7.91 -2.39 -0.02 -0.75 16 29 H 0.12 -0.26 8.14 -2.39 -0.02 -0.28 16 30 H 0.12 -0.20 8.14 -2.39 -0.02 -0.22 16 31 H 0.44 1.80 8.66 -92.71 -0.80 1.00 16 32 H 0.42 11.11 8.08 -92.71 -0.75 10.36 16 33 H 0.09 1.95 8.14 -2.39 -0.02 1.94 16 34 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 36 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.06 2.28 7.93 -2.39 -0.02 2.26 16 38 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 39 H 0.26 16.77 8.31 -92.71 -0.77 16.00 16 40 H 0.04 1.58 7.07 -2.39 -0.02 1.56 16 41 H 0.03 1.89 4.50 -2.38 -0.01 1.88 16 42 H 0.19 5.31 7.99 -2.91 -0.02 5.29 16 Total: -1.00 -89.89 357.54 -0.39 -90.28 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -0.56 Total: 8.56 kcal Atomic # 6 Polarization: 17.91 SS G_CDS: 7.22 Total: 25.13 kcal Atomic # 7 Polarization: -137.05 SS G_CDS: -7.46 Total: -144.52 kcal Atomic # 8 Polarization: -38.10 SS G_CDS: -0.11 Total: -38.22 kcal Atomic # 14 Polarization: 51.53 SS G_CDS: 1.67 Total: 53.20 kcal Atomic # 16 Polarization: 6.70 SS G_CDS: -1.15 Total: 5.55 kcal Total: -89.89 -0.39 -90.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007745649.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.869 kcal (2) G-P(sol) polarization free energy of solvation -89.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds