Wall clock time and date at job start Tue Mar 31 2020 20:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21282 * 120.00418 * 2 1 4 4 N 1.34776 * 119.99969 * 179.97438 * 2 1 3 5 5 C 1.38905 * 119.99982 * 180.02562 * 4 2 1 6 6 N 1.29519 * 125.26549 * 180.02562 * 5 4 2 7 7 C 1.33639 * 115.66478 * 179.97438 * 6 5 4 8 8 C 1.47193 * 122.50166 * 179.97438 * 7 6 5 9 9 O 1.21643 * 120.00229 * 180.02562 * 8 7 6 10 10 N 1.34782 * 119.99889 * 0.02562 * 8 7 6 11 11 C 1.46506 * 119.99914 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.49351 * 324.93639 * 11 10 8 13 13 C 1.53034 * 109.49458 * 204.84265 * 11 10 8 14 14 C 1.53041 * 109.53710 * 178.68388 * 13 11 10 15 15 C 1.53189 * 109.31369 * 61.36213 * 14 13 11 16 16 N 1.46923 * 108.77667 * 305.36692 * 15 14 13 17 17 C 1.36941 * 120.63127 * 233.62931 * 16 15 14 18 18 H 1.08001 * 119.99461 * 152.59908 * 17 16 15 19 19 C 1.38806 * 119.99790 * 332.59938 * 17 16 15 20 20 N 1.31623 * 119.99382 * 159.36187 * 19 17 16 21 21 Si 1.86797 * 120.00413 * 339.36261 * 19 17 16 22 22 H 1.48495 * 109.47040 * 92.89868 * 21 19 17 23 23 H 1.48493 * 109.47120 * 212.90197 * 21 19 17 24 24 H 1.48500 * 109.46886 * 332.90131 * 21 19 17 25 25 C 1.46927 * 118.73877 * 53.60481 * 16 15 14 26 26 C 1.34890 * 114.99591 * 0.02562 * 7 6 5 27 27 S 1.70984 * 109.19951 * 359.74863 * 26 7 6 28 28 H 1.08999 * 109.46715 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46913 * 119.99563 * 1 2 3 30 30 H 1.08994 * 109.46873 * 240.00175 * 1 2 3 31 31 H 0.96996 * 119.99830 * 0.02562 * 4 2 1 32 32 H 0.96993 * 120.00361 * 0.02562 * 10 8 7 33 33 H 1.09005 * 109.45901 * 298.70167 * 13 11 10 34 34 H 1.08997 * 109.46655 * 58.66184 * 13 11 10 35 35 H 1.08999 * 109.49599 * 301.40886 * 14 13 11 36 36 H 1.09006 * 109.49931 * 181.31607 * 14 13 11 37 37 H 1.09002 * 109.58955 * 185.58276 * 15 14 13 38 38 H 1.08998 * 109.70276 * 65.22636 * 15 14 13 39 39 H 0.97006 * 119.99747 * 180.02562 * 20 19 17 40 40 H 1.09001 * 109.58825 * 186.60284 * 25 16 15 41 41 H 1.09003 * 109.58131 * 66.18269 * 25 16 15 42 42 H 1.07999 * 125.40325 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5699 -1.1672 0.0011 6 7 4.3177 -2.2247 0.0011 7 6 5.6354 -2.0018 0.0011 8 6 6.6222 -3.0939 0.0017 9 8 7.8117 -2.8389 0.0022 10 7 6.2080 -4.3765 0.0018 11 6 7.1903 -5.4635 0.0030 12 1 8.0587 -5.1697 -0.5867 13 6 6.5619 -6.7203 -0.6032 14 6 7.5972 -7.8470 -0.6326 15 6 8.0368 -8.1686 0.7992 16 7 8.5082 -6.9324 1.4381 17 6 9.7471 -6.8757 2.0186 18 1 10.2698 -5.9328 2.0846 19 6 10.3311 -8.0298 2.5222 20 7 11.6338 -8.0833 2.7025 21 14 9.2683 -9.5070 2.9439 22 1 9.2045 -10.4206 1.7751 23 1 9.8569 -10.2256 4.1025 24 1 7.8987 -9.0488 3.2894 25 6 7.6252 -5.7581 1.4419 26 6 5.9935 -0.7013 0.0016 27 16 4.5860 0.2695 -0.0050 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 -0.3633 -0.5138 0.8900 31 1 1.6958 -2.0072 0.0005 32 1 5.2596 -4.5799 0.0011 33 1 5.7083 -7.0272 0.0012 34 1 6.2292 -6.5064 -1.6189 35 1 8.4619 -7.5314 -1.2164 36 1 7.1561 -8.7348 -1.0859 37 1 8.8448 -8.8999 0.7779 38 1 7.1939 -8.5717 1.3606 39 1 12.0421 -8.8900 3.0541 40 1 8.1616 -4.8989 1.8448 41 1 6.7471 -5.9632 2.0544 42 1 7.0083 -0.3318 0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007745650.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:23 Heat of formation + Delta-G solvation = 3.776471 kcal Electronic energy + Delta-G solvation = -26443.911390 eV Core-core repulsion = 22551.803803 eV Total energy + Delta-G solvation = -3892.107587 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.95075 -40.23548 -38.80619 -37.45105 -35.40614 -34.41074 -32.45246 -31.32572 -30.80236 -29.66461 -29.24235 -25.66703 -25.25829 -23.34417 -22.11306 -21.93629 -21.67043 -19.95796 -19.52646 -18.79082 -17.51924 -17.27145 -16.82646 -16.47080 -16.46413 -15.52823 -15.31171 -15.17655 -14.77755 -14.36239 -14.10448 -13.89078 -13.60857 -13.47015 -13.30888 -13.18070 -12.96494 -12.79702 -12.40728 -12.21538 -12.03065 -11.50179 -11.46981 -11.12667 -10.88133 -10.73572 -10.68990 -10.28134 -10.12829 -10.02861 -9.81835 -9.68542 -9.67683 -9.42651 -8.96817 -8.62919 -8.45153 -6.92873 -5.88855 -3.25195 0.32544 0.69577 1.47163 1.49040 2.06902 2.16036 3.34286 3.38566 3.47018 3.51039 3.54272 3.93717 4.18077 4.55367 4.57331 4.64860 4.99241 5.04767 5.11341 5.16369 5.23766 5.31947 5.35305 5.47250 5.56486 5.71350 5.85674 5.98904 6.07603 6.23415 6.26858 6.34003 6.46590 6.58049 6.66294 6.68100 6.81948 6.97460 7.16545 7.18684 7.76506 8.01714 8.37470 8.41988 8.99956 9.77309 10.13260 11.27118 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.022738 B = 0.002391 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.114029 B =11708.512755 C =12202.816492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.511 3.489 3 O -0.510 6.510 4 N -0.622 5.622 5 C 0.244 3.756 6 N -0.476 5.476 7 C 0.033 3.967 8 C 0.588 3.412 9 O -0.526 6.526 10 N -0.705 5.705 11 C 0.124 3.876 12 H 0.092 0.908 13 C -0.115 4.115 14 C -0.131 4.131 15 C 0.122 3.878 16 N -0.602 5.602 17 C -0.257 4.257 18 H 0.087 0.913 19 C 0.022 3.978 20 N -0.908 5.908 21 Si 0.883 3.117 22 H -0.288 1.288 23 H -0.304 1.304 24 H -0.271 1.271 25 C 0.145 3.855 26 C -0.259 4.259 27 S 0.271 5.729 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.426 0.574 32 H 0.403 0.597 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.026 0.974 39 H 0.262 0.738 40 H 0.068 0.932 41 H 0.023 0.977 42 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.537 14.955 -8.475 31.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.299 3.701 3 O -0.384 6.384 4 N -0.273 5.273 5 C -0.125 4.125 6 N -0.199 5.199 7 C -0.102 4.102 8 C 0.370 3.630 9 O -0.402 6.402 10 N -0.355 5.355 11 C 0.019 3.981 12 H 0.110 0.890 13 C -0.153 4.153 14 C -0.171 4.171 15 C -0.004 4.004 16 N -0.325 5.325 17 C -0.385 4.385 18 H 0.105 0.895 19 C -0.176 4.176 20 N -0.551 5.551 21 Si 0.714 3.286 22 H -0.216 1.216 23 H -0.232 1.232 24 H -0.197 1.197 25 C 0.017 3.983 26 C -0.402 4.402 27 S 0.522 5.478 28 H 0.122 0.878 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.265 0.735 32 H 0.238 0.762 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.043 0.957 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.041 0.959 42 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -25.592 16.355 -8.398 31.511 hybrid contribution -0.607 -2.328 0.317 2.427 sum -26.199 14.027 -8.081 30.796 Atomic orbital electron populations 1.21893 0.88506 1.06808 1.05358 1.21360 0.91717 0.82099 0.74968 1.90702 1.69629 1.30669 1.47381 1.42856 1.01552 1.11554 1.71325 1.24304 0.89742 0.93894 1.04551 1.67020 1.03357 1.29463 1.20071 1.19955 0.88492 0.93847 1.07872 1.17097 0.86765 0.82032 0.77060 1.90874 1.15744 1.83584 1.49958 1.45910 1.10820 1.05093 1.73659 1.21755 0.91311 0.84844 1.00230 0.89018 1.21668 0.98705 0.95020 0.99939 1.21996 0.98481 0.96924 0.99709 1.21401 0.97964 0.90124 0.90895 1.44300 1.16220 1.07713 1.64302 1.18960 0.90419 0.96961 1.32181 0.89546 1.25271 0.95596 0.97763 0.99010 1.69851 1.08688 1.28461 1.48094 0.86939 0.81273 0.83196 0.77197 1.21627 1.23210 1.19654 1.21217 0.93567 0.91166 0.92305 1.26947 1.07838 0.97712 1.07705 1.84873 0.91149 1.05302 1.66445 0.87756 0.88337 0.88297 0.73457 0.76218 0.92065 0.92398 0.91348 0.92222 0.90761 0.95654 0.92817 0.91394 0.95940 0.79150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.19 10.32 36.01 0.37 0.19 16 2 C 0.51 2.94 7.90 -10.99 -0.09 2.85 16 3 O -0.51 -4.83 14.59 5.56 0.08 -4.75 16 4 N -0.62 -3.79 5.40 -11.91 -0.06 -3.86 16 5 C 0.24 2.44 8.36 -87.53 -0.73 1.71 16 6 N -0.48 -5.66 10.11 -10.51 -0.11 -5.77 16 7 C 0.03 0.46 6.66 -84.63 -0.56 -0.11 16 8 C 0.59 9.87 7.76 -12.62 -0.10 9.77 16 9 O -0.53 -10.74 16.32 5.24 0.09 -10.66 16 10 N -0.70 -10.84 5.08 -54.84 -0.28 -11.12 16 11 C 0.12 2.22 2.60 -67.81 -0.18 2.04 16 12 H 0.09 1.88 7.58 -51.93 -0.39 1.49 16 13 C -0.12 -1.77 5.35 -26.69 -0.14 -1.91 16 14 C -0.13 -2.30 6.08 -26.61 -0.16 -2.46 16 15 C 0.12 2.68 4.21 -3.71 -0.02 2.66 16 16 N -0.60 -14.89 2.77 -172.33 -0.48 -15.37 16 17 C -0.26 -7.50 10.03 -15.06 -0.15 -7.65 16 18 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 19 C 0.02 0.66 5.23 -17.43 -0.09 0.57 16 20 N -0.91 -28.57 13.97 55.49 0.78 -27.79 16 21 Si 0.88 22.77 24.34 -169.99 -4.14 18.63 16 22 H -0.29 -7.10 6.62 56.52 0.37 -6.73 16 23 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 24 H -0.27 -6.86 6.64 56.52 0.38 -6.49 16 25 C 0.14 3.10 6.09 -3.71 -0.02 3.07 16 26 C -0.26 -3.17 10.55 29.54 0.31 -2.86 16 27 S 0.27 2.74 20.29 -107.50 -2.18 0.56 16 28 H 0.10 0.13 8.12 -51.93 -0.42 -0.29 16 29 H 0.10 -0.07 8.14 -51.93 -0.42 -0.49 16 30 H 0.10 -0.05 8.14 -51.93 -0.42 -0.47 16 31 H 0.43 1.34 8.82 -40.82 -0.36 0.98 16 32 H 0.40 5.23 8.08 -40.82 -0.33 4.90 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.07 1.79 4.50 -51.93 -0.23 1.56 16 38 H 0.03 0.55 7.07 -51.93 -0.37 0.18 16 39 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 40 H 0.07 1.59 7.93 -51.93 -0.41 1.17 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.19 2.22 7.99 -52.49 -0.42 1.80 16 LS Contribution 357.82 15.07 5.39 5.39 Total: -1.00 -36.93 357.82 -7.98 -44.91 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -5.51 Total: 1.95 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: -1.56 Total: 7.86 kcal Atomic # 7 Polarization: -63.75 SS G_CDS: -0.15 Total: -63.90 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: 0.17 Total: -15.40 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.14 Total: 18.63 kcal Atomic # 16 Polarization: 2.74 SS G_CDS: -2.18 Total: 0.56 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.93 -7.98 -44.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007745650.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.688 kcal (2) G-P(sol) polarization free energy of solvation -36.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds