Wall clock time and date at job start Tue Mar 31 2020 20:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21282 * 120.00418 * 2 1 4 4 N 1.34776 * 119.99969 * 179.97438 * 2 1 3 5 5 C 1.38905 * 119.99982 * 180.02562 * 4 2 1 6 6 N 1.29519 * 125.26549 * 180.02562 * 5 4 2 7 7 C 1.33639 * 115.66478 * 179.97438 * 6 5 4 8 8 C 1.47193 * 122.50166 * 179.97438 * 7 6 5 9 9 O 1.21643 * 120.00229 * 180.02562 * 8 7 6 10 10 N 1.34782 * 119.99889 * 0.02562 * 8 7 6 11 11 C 1.46506 * 119.99914 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.49351 * 324.93639 * 11 10 8 13 13 C 1.53034 * 109.49458 * 204.84265 * 11 10 8 14 14 C 1.53041 * 109.53710 * 178.68388 * 13 11 10 15 15 C 1.53189 * 109.31369 * 61.36213 * 14 13 11 16 16 N 1.46923 * 108.77667 * 305.36692 * 15 14 13 17 17 C 1.36941 * 120.63127 * 233.62931 * 16 15 14 18 18 H 1.08001 * 119.99461 * 152.59908 * 17 16 15 19 19 C 1.38806 * 119.99790 * 332.59938 * 17 16 15 20 20 N 1.31623 * 119.99382 * 159.36187 * 19 17 16 21 21 Si 1.86797 * 120.00413 * 339.36261 * 19 17 16 22 22 H 1.48495 * 109.47040 * 92.89868 * 21 19 17 23 23 H 1.48493 * 109.47120 * 212.90197 * 21 19 17 24 24 H 1.48500 * 109.46886 * 332.90131 * 21 19 17 25 25 C 1.46927 * 118.73877 * 53.60481 * 16 15 14 26 26 C 1.34890 * 114.99591 * 0.02562 * 7 6 5 27 27 S 1.70984 * 109.19951 * 359.74863 * 26 7 6 28 28 H 1.08999 * 109.46715 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46913 * 119.99563 * 1 2 3 30 30 H 1.08994 * 109.46873 * 240.00175 * 1 2 3 31 31 H 0.96996 * 119.99830 * 0.02562 * 4 2 1 32 32 H 0.96993 * 120.00361 * 0.02562 * 10 8 7 33 33 H 1.09005 * 109.45901 * 298.70167 * 13 11 10 34 34 H 1.08997 * 109.46655 * 58.66184 * 13 11 10 35 35 H 1.08999 * 109.49599 * 301.40886 * 14 13 11 36 36 H 1.09006 * 109.49931 * 181.31607 * 14 13 11 37 37 H 1.09002 * 109.58955 * 185.58276 * 15 14 13 38 38 H 1.08998 * 109.70276 * 65.22636 * 15 14 13 39 39 H 0.97006 * 119.99747 * 180.02562 * 20 19 17 40 40 H 1.09001 * 109.58825 * 186.60284 * 25 16 15 41 41 H 1.09003 * 109.58131 * 66.18269 * 25 16 15 42 42 H 1.07999 * 125.40325 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5699 -1.1672 0.0011 6 7 4.3177 -2.2247 0.0011 7 6 5.6354 -2.0018 0.0011 8 6 6.6222 -3.0939 0.0017 9 8 7.8117 -2.8389 0.0022 10 7 6.2080 -4.3765 0.0018 11 6 7.1903 -5.4635 0.0030 12 1 8.0587 -5.1697 -0.5867 13 6 6.5619 -6.7203 -0.6032 14 6 7.5972 -7.8470 -0.6326 15 6 8.0368 -8.1686 0.7992 16 7 8.5082 -6.9324 1.4381 17 6 9.7471 -6.8757 2.0186 18 1 10.2698 -5.9328 2.0846 19 6 10.3311 -8.0298 2.5222 20 7 11.6338 -8.0833 2.7025 21 14 9.2683 -9.5070 2.9439 22 1 9.2045 -10.4206 1.7751 23 1 9.8569 -10.2256 4.1025 24 1 7.8987 -9.0488 3.2894 25 6 7.6252 -5.7581 1.4419 26 6 5.9935 -0.7013 0.0016 27 16 4.5860 0.2695 -0.0050 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 -0.3633 -0.5138 0.8900 31 1 1.6958 -2.0072 0.0005 32 1 5.2596 -4.5799 0.0011 33 1 5.7083 -7.0272 0.0012 34 1 6.2292 -6.5064 -1.6189 35 1 8.4619 -7.5314 -1.2164 36 1 7.1561 -8.7348 -1.0859 37 1 8.8448 -8.8999 0.7779 38 1 7.1939 -8.5717 1.3606 39 1 12.0421 -8.8900 3.0541 40 1 8.1616 -4.8989 1.8448 41 1 6.7471 -5.9632 2.0544 42 1 7.0083 -0.3318 0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007745650.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:23 Heat of formation + Delta-G solvation = -25.877045 kcal Electronic energy + Delta-G solvation = -26445.197263 eV Core-core repulsion = 22551.803803 eV Total energy + Delta-G solvation = -3893.393460 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.75663 -41.17502 -39.99370 -38.96043 -36.08156 -36.03665 -34.29284 -32.70874 -31.90269 -30.88941 -30.13218 -27.27084 -26.67734 -24.45488 -23.75357 -23.14020 -22.53631 -21.39891 -20.77422 -19.67849 -18.80750 -18.31197 -17.86878 -17.74347 -17.23019 -17.08516 -16.77432 -16.40188 -15.81193 -15.55889 -15.50838 -15.17656 -15.08705 -14.75310 -14.59014 -14.34037 -14.10523 -13.76157 -13.41904 -13.32798 -13.13181 -13.10214 -12.83782 -12.61798 -12.45494 -12.21391 -11.86788 -11.71271 -11.52972 -11.40205 -11.34499 -11.19372 -11.09585 -10.79329 -10.52018 -10.24356 -9.44218 -8.94593 -8.18420 -5.52752 -0.56172 -0.10051 0.58632 0.62840 1.29437 1.41471 1.47247 1.48187 1.52118 2.12118 2.27175 2.40590 3.03533 3.18519 3.37376 3.71372 3.80334 4.01273 4.03864 4.10953 4.17388 4.30746 4.39436 4.51144 4.54540 4.63429 4.68329 4.68378 4.90883 4.91226 4.97881 5.02204 5.06959 5.15819 5.18097 5.33449 5.49951 5.74667 5.83140 6.09276 6.31690 6.58967 6.72843 6.87706 7.13566 7.58026 7.96061 9.01894 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.022738 B = 0.002391 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.114029 B =11708.512755 C =12202.816492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.509 3.491 3 O -0.549 6.549 4 N -0.609 5.609 5 C 0.247 3.753 6 N -0.482 5.482 7 C 0.015 3.985 8 C 0.584 3.416 9 O -0.575 6.575 10 N -0.689 5.689 11 C 0.136 3.864 12 H 0.057 0.943 13 C -0.105 4.105 14 C -0.125 4.125 15 C 0.112 3.888 16 N -0.617 5.617 17 C -0.257 4.257 18 H 0.035 0.965 19 C -0.038 4.038 20 N -0.959 5.959 21 Si 0.960 3.040 22 H -0.265 1.265 23 H -0.310 1.310 24 H -0.258 1.258 25 C 0.146 3.854 26 C -0.269 4.269 27 S 0.303 5.697 28 H 0.104 0.896 29 H 0.124 0.876 30 H 0.122 0.878 31 H 0.442 0.558 32 H 0.419 0.581 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.050 0.950 36 H 0.101 0.899 37 H 0.051 0.949 38 H 0.045 0.955 39 H 0.263 0.737 40 H 0.029 0.971 41 H 0.042 0.958 42 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.840 13.827 -9.552 36.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.300 3.700 3 O -0.426 6.426 4 N -0.262 5.262 5 C -0.123 4.123 6 N -0.206 5.206 7 C -0.120 4.120 8 C 0.369 3.631 9 O -0.454 6.454 10 N -0.340 5.340 11 C 0.030 3.970 12 H 0.076 0.924 13 C -0.143 4.143 14 C -0.165 4.165 15 C -0.012 4.012 16 N -0.342 5.342 17 C -0.386 4.386 18 H 0.053 0.947 19 C -0.233 4.233 20 N -0.605 5.605 21 Si 0.787 3.213 22 H -0.191 1.191 23 H -0.239 1.239 24 H -0.182 1.182 25 C 0.020 3.980 26 C -0.413 4.413 27 S 0.555 5.445 28 H 0.122 0.878 29 H 0.142 0.858 30 H 0.141 0.859 31 H 0.285 0.715 32 H 0.257 0.743 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.068 0.932 36 H 0.119 0.881 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.048 0.952 41 H 0.059 0.941 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -31.015 15.213 -9.508 35.829 hybrid contribution 0.986 -1.770 0.643 2.126 sum -30.029 13.443 -8.866 34.074 Atomic orbital electron populations 1.21986 0.84308 1.07604 1.07625 1.22381 0.93411 0.81067 0.73190 1.90681 1.70590 1.32072 1.49224 1.43051 0.99736 1.12851 1.70586 1.24583 0.91411 0.93397 1.02921 1.66970 1.02310 1.29985 1.21330 1.19589 0.89086 0.93145 1.10175 1.17548 0.86703 0.82956 0.75891 1.90849 1.18037 1.84363 1.52167 1.45691 1.11154 1.04164 1.72973 1.21381 0.91388 0.87019 0.97237 0.92425 1.21638 0.98387 0.92190 1.02036 1.21923 0.98776 0.99413 0.96345 1.21574 0.97622 0.88218 0.93743 1.44364 1.15234 1.09770 1.64819 1.18770 0.92111 0.95226 1.32504 0.94698 1.26016 0.96703 1.01456 0.99097 1.70005 1.10786 1.29814 1.49856 0.85714 0.79364 0.79091 0.77089 1.19083 1.23905 1.18182 1.21251 0.92982 0.88820 0.94979 1.27106 1.09004 0.98002 1.07156 1.84866 0.89575 1.04448 1.65612 0.87755 0.85804 0.85946 0.71507 0.74271 0.89432 0.89158 0.93155 0.88105 0.93041 0.93718 0.92787 0.95193 0.94052 0.79542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.27 10.32 71.24 0.74 1.00 16 2 C 0.51 4.41 7.90 87.66 0.69 5.10 16 3 O -0.55 -9.39 14.59 -3.04 -0.04 -9.43 16 4 N -0.61 -5.64 5.40 -309.98 -1.67 -7.31 16 5 C 0.25 4.47 8.36 179.27 1.50 5.97 16 6 N -0.48 -10.76 10.11 -187.16 -1.89 -12.66 16 7 C 0.01 0.41 6.66 40.45 0.27 0.67 16 8 C 0.58 20.16 7.76 86.59 0.67 20.83 16 9 O -0.57 -25.09 16.32 -4.17 -0.07 -25.16 16 10 N -0.69 -20.67 5.08 -445.64 -2.26 -22.93 16 11 C 0.14 4.81 2.60 45.06 0.12 4.93 16 12 H 0.06 2.45 7.58 -2.39 -0.02 2.44 16 13 C -0.10 -2.83 5.35 30.62 0.16 -2.66 16 14 C -0.13 -3.99 6.08 30.67 0.19 -3.81 16 15 C 0.11 4.72 4.21 86.36 0.36 5.08 16 16 N -0.62 -30.97 2.77 -699.12 -1.94 -32.91 16 17 C -0.26 -15.76 10.03 84.03 0.84 -14.92 16 18 H 0.04 2.43 8.06 -2.91 -0.02 2.41 16 19 C -0.04 -2.34 5.23 84.86 0.44 -1.90 16 20 N -0.96 -63.00 13.97 21.65 0.30 -62.70 16 21 Si 0.96 47.44 24.34 68.60 1.67 49.11 16 22 H -0.26 -12.00 6.62 99.48 0.66 -11.35 16 23 H -0.31 -15.55 7.11 99.48 0.71 -14.84 16 24 H -0.26 -12.02 6.64 99.48 0.66 -11.36 16 25 C 0.15 6.36 6.09 86.36 0.53 6.89 16 26 C -0.27 -6.73 10.55 67.05 0.71 -6.02 16 27 S 0.30 5.87 20.29 -56.49 -1.15 4.73 16 28 H 0.10 -0.08 8.12 -2.39 -0.02 -0.10 16 29 H 0.12 -0.76 8.14 -2.39 -0.02 -0.77 16 30 H 0.12 -0.70 8.14 -2.39 -0.02 -0.72 16 31 H 0.44 1.15 8.82 -92.71 -0.82 0.33 16 32 H 0.42 9.85 8.08 -92.71 -0.75 9.10 16 33 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 34 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.10 2.46 8.14 -2.38 -0.02 2.44 16 37 H 0.05 2.39 4.50 -2.39 -0.01 2.38 16 38 H 0.04 1.73 7.07 -2.39 -0.02 1.71 16 39 H 0.26 16.24 8.31 -92.70 -0.77 15.47 16 40 H 0.03 1.49 7.93 -2.39 -0.02 1.47 16 41 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.19 4.66 7.99 -2.91 -0.02 4.63 16 Total: -1.00 -87.11 357.82 -0.41 -87.52 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -0.58 Total: 10.56 kcal Atomic # 6 Polarization: 13.95 SS G_CDS: 7.22 Total: 21.17 kcal Atomic # 7 Polarization: -131.04 SS G_CDS: -7.46 Total: -138.51 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -0.11 Total: -34.59 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 1.67 Total: 49.11 kcal Atomic # 16 Polarization: 5.87 SS G_CDS: -1.15 Total: 4.73 kcal Total: -87.11 -0.41 -87.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007745650.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.647 kcal (2) G-P(sol) polarization free energy of solvation -87.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds