Wall clock time and date at job start Tue Mar 31 2020 21:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35654 * 117.00074 * 2 1 4 4 C 1.38651 * 120.14044 * 359.97438 * 3 2 1 5 5 C 1.38204 * 120.07181 * 180.02562 * 4 3 2 6 6 Cl 1.73596 * 119.81842 * 179.97438 * 5 4 3 7 7 C 1.38705 * 120.36537 * 0.02562 * 5 4 3 8 8 C 1.37731 * 120.28389 * 359.73655 * 7 5 4 9 9 C 1.39746 * 119.91840 * 0.51507 * 8 7 5 10 10 C 1.47475 * 120.17785 * 179.76684 * 9 8 7 11 11 O 1.21601 * 120.00429 * 179.72170 * 10 9 8 12 12 N 1.34779 * 120.00102 * 359.72387 * 10 9 8 13 13 C 1.46494 * 120.00105 * 180.02562 * 12 10 9 14 14 H 1.08996 * 109.52678 * 325.08145 * 13 12 10 15 15 C 1.53045 * 109.49690 * 204.99523 * 13 12 10 16 16 C 1.53039 * 109.52540 * 178.69031 * 15 13 12 17 17 C 1.53163 * 109.32922 * 61.37539 * 16 15 13 18 18 N 1.46926 * 108.76754 * 305.35710 * 17 16 15 19 19 C 1.36938 * 120.62731 * 233.63287 * 18 17 16 20 20 H 1.07993 * 120.00479 * 151.81165 * 19 18 17 21 21 C 1.38814 * 120.00043 * 331.80308 * 19 18 17 22 22 N 1.31627 * 119.99987 * 343.08763 * 21 19 18 23 23 Si 1.86799 * 119.99883 * 163.08155 * 21 19 18 24 24 H 1.48489 * 109.47406 * 0.02562 * 23 21 19 25 25 H 1.48509 * 109.46874 * 120.00550 * 23 21 19 26 26 H 1.48499 * 109.47144 * 240.00045 * 23 21 19 27 27 C 1.46921 * 118.74251 * 53.60327 * 18 17 16 28 28 H 1.09001 * 109.46921 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47598 * 299.99229 * 1 2 3 30 30 H 1.09000 * 109.47978 * 59.99997 * 1 2 3 31 31 H 1.07996 * 119.95941 * 359.97438 * 4 3 2 32 32 H 1.07990 * 119.85918 * 179.97438 * 7 5 4 33 33 H 1.07992 * 120.04161 * 180.25814 * 8 7 5 34 34 H 0.96999 * 119.99608 * 359.97438 * 12 10 9 35 35 H 1.08992 * 109.45897 * 298.70372 * 15 13 12 36 36 H 1.09001 * 109.45924 * 58.68093 * 15 13 12 37 37 H 1.09007 * 109.49919 * 181.31045 * 16 15 13 38 38 H 1.09001 * 109.50363 * 301.40761 * 16 15 13 39 39 H 1.08997 * 109.59196 * 185.56564 * 17 16 15 40 40 H 1.09009 * 109.59041 * 65.13564 * 17 16 15 41 41 H 0.96996 * 119.99377 * 179.97438 * 22 21 19 42 42 H 1.08996 * 109.58667 * 186.60713 * 27 18 17 43 43 H 1.09006 * 109.58085 * 66.18205 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2925 2.3734 -0.0005 5 6 1.9214 3.6040 -0.0011 6 17 0.9731 5.0581 -0.0024 7 6 3.3062 3.6838 -0.0016 8 6 4.0680 2.5363 0.0039 9 6 3.4444 1.2857 -0.0009 10 6 4.2546 0.0534 -0.0003 11 8 3.7087 -1.0332 0.0006 12 7 5.6001 0.1315 -0.0008 13 6 6.4048 -1.0926 -0.0007 14 1 5.9013 -1.8596 0.5877 15 6 7.7782 -0.8010 0.6084 16 6 8.6078 -2.0867 0.6387 17 6 8.8116 -2.5924 -0.7926 18 7 7.4978 -2.7372 -1.4343 19 6 7.1323 -3.9218 -2.0159 20 1 6.0894 -4.1964 -2.0728 21 6 8.1023 -4.7698 -2.5326 22 7 9.3144 -4.3154 -2.7710 23 14 7.6874 -6.5559 -2.8894 24 1 6.2682 -6.8143 -2.5373 25 1 7.8973 -6.8339 -4.3331 26 1 8.5669 -7.4391 -2.0823 27 6 6.5835 -1.5872 -1.4396 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3635 0.5138 -0.8899 31 1 0.2139 2.3187 -0.0014 32 1 3.7891 4.6497 -0.0024 33 1 5.1458 2.6030 0.0076 34 1 6.0356 0.9982 -0.0019 35 1 8.2913 -0.0520 0.0053 36 1 7.6528 -0.4258 1.6241 37 1 9.5772 -1.8836 1.0938 38 1 8.0836 -2.8444 1.2211 39 1 9.3160 -3.5584 -0.7706 40 1 9.4140 -1.8759 -1.3511 41 1 9.9922 -4.9081 -3.1317 42 1 5.6178 -1.8900 -1.8444 43 1 7.0043 -0.7888 -2.0509 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008339010.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:24 Heat of formation + Delta-G solvation = -29.831113 kcal Electronic energy + Delta-G solvation = -26914.570671 eV Core-core repulsion = 22986.669293 eV Total energy + Delta-G solvation = -3927.901379 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.80891 -39.16537 -37.95127 -37.23098 -36.58973 -34.26529 -32.52627 -31.41146 -30.59082 -30.41782 -28.59298 -27.45148 -25.24863 -24.22978 -22.69939 -22.11850 -21.81097 -20.23694 -19.50109 -18.61497 -17.26744 -16.89517 -16.62161 -16.06759 -15.64825 -15.34716 -15.10585 -14.71275 -14.62154 -14.11331 -13.96939 -13.66810 -13.60769 -13.32352 -13.06076 -12.80997 -12.42148 -12.36728 -12.20335 -12.08854 -11.79262 -11.65952 -11.38248 -11.15503 -11.05158 -10.85696 -10.75790 -10.22733 -10.18357 -9.90156 -9.86808 -9.58780 -9.45804 -9.32096 -8.78855 -8.57098 -8.35292 -6.62788 -5.74821 -3.17035 0.40366 0.94390 1.62857 2.75368 2.96962 3.32809 3.41617 3.49405 3.53962 3.65661 4.28168 4.52051 4.57593 4.62044 4.72555 4.87569 4.91045 5.10547 5.12082 5.30066 5.33474 5.41702 5.55689 5.61155 5.66328 5.72217 5.76768 5.79802 6.11617 6.13406 6.19735 6.27609 6.56054 6.64501 6.71897 6.73474 6.88287 7.01827 7.06630 7.39166 7.67736 7.79057 7.87651 8.47482 8.53882 9.26258 9.88459 10.44243 11.33965 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018467 B = 0.002586 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.884095 B =10826.724557 C =11765.531511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.270 6.270 3 C 0.197 3.803 4 C -0.215 4.215 5 C 0.026 3.974 6 Cl -0.064 7.064 7 C -0.159 4.159 8 C -0.035 4.035 9 C -0.160 4.160 10 C 0.554 3.446 11 O -0.511 6.511 12 N -0.720 5.720 13 C 0.128 3.872 14 H 0.087 0.913 15 C -0.115 4.115 16 C -0.139 4.139 17 C 0.167 3.833 18 N -0.588 5.588 19 C -0.248 4.248 20 H 0.067 0.933 21 C 0.001 3.999 22 N -0.905 5.905 23 Si 0.902 3.098 24 H -0.277 1.277 25 H -0.291 1.291 26 H -0.289 1.289 27 C 0.143 3.857 28 H 0.106 0.894 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.144 0.856 34 H 0.391 0.609 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.089 0.911 40 H 0.019 0.981 41 H 0.252 0.748 42 H 0.058 0.942 43 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.754 19.099 8.390 24.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.181 6.181 3 C 0.148 3.852 4 C -0.235 4.235 5 C -0.001 4.001 6 Cl -0.035 7.035 7 C -0.177 4.177 8 C -0.054 4.054 9 C -0.165 4.165 10 C 0.340 3.660 11 O -0.386 6.386 12 N -0.372 5.372 13 C 0.022 3.978 14 H 0.105 0.895 15 C -0.153 4.153 16 C -0.179 4.179 17 C 0.041 3.959 18 N -0.311 5.311 19 C -0.377 4.377 20 H 0.085 0.915 21 C -0.197 4.197 22 N -0.549 5.549 23 Si 0.732 3.268 24 H -0.201 1.201 25 H -0.218 1.218 26 H -0.216 1.216 27 C 0.015 3.985 28 H 0.124 0.876 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.162 0.838 32 H 0.159 0.841 33 H 0.162 0.838 34 H 0.225 0.775 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.107 0.893 40 H 0.037 0.963 41 H 0.062 0.938 42 H 0.076 0.924 43 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -14.030 18.084 8.305 24.349 hybrid contribution -0.270 -0.028 -0.258 0.374 sum -14.300 18.056 8.047 24.398 Atomic orbital electron populations 1.23233 0.78482 1.04771 1.01209 1.86463 1.20941 1.24520 1.86139 1.18881 0.90886 0.84608 0.90834 1.21063 1.00999 0.90323 1.11067 1.20819 0.91950 0.87233 1.00124 1.98387 1.72419 1.36115 1.96560 1.20863 0.91270 0.99719 1.05894 1.21155 1.00242 0.90051 0.93988 1.19648 0.90958 0.94694 1.11155 1.17831 0.82279 0.88278 0.77636 1.90869 1.71406 1.28348 1.47991 1.46042 1.05625 1.10124 1.75399 1.21745 0.90256 0.85310 1.00448 0.89491 1.21680 0.95149 0.99191 0.99262 1.22175 0.98065 0.95958 1.01727 1.20836 0.87110 1.00953 0.86951 1.44007 1.14257 1.08776 1.64026 1.19273 0.92899 0.94305 1.31253 0.91520 1.25034 0.96683 0.99329 0.98665 1.70050 1.03553 1.34055 1.47283 0.86217 0.77950 0.85199 0.77448 1.20146 1.21770 1.21560 1.21189 0.94951 0.90477 0.91903 0.87564 0.92490 0.92414 0.83793 0.84140 0.83842 0.77450 0.92256 0.93076 0.92737 0.92407 0.89309 0.96310 0.93760 0.92356 0.96514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 101.05 0.99 1.14 16 2 O -0.27 -3.72 8.57 -40.55 -0.35 -4.07 16 3 C 0.20 2.46 6.70 -38.70 -0.26 2.20 16 4 C -0.22 -2.09 8.80 -39.44 -0.35 -2.44 16 5 C 0.03 0.23 6.32 -39.42 -0.25 -0.01 16 6 Cl -0.06 -0.51 28.94 -51.86 -1.50 -2.01 16 7 C -0.16 -1.32 9.80 -39.59 -0.39 -1.71 16 8 C -0.04 -0.33 9.53 -39.20 -0.37 -0.70 16 9 C -0.16 -2.06 5.89 -104.84 -0.62 -2.68 16 10 C 0.55 9.02 7.73 -12.50 -0.10 8.93 16 11 O -0.51 -10.58 14.82 -16.61 -0.25 -10.83 16 12 N -0.72 -10.54 5.03 -54.75 -0.28 -10.81 16 13 C 0.13 2.31 2.60 -67.81 -0.18 2.14 16 14 H 0.09 1.82 7.58 -51.93 -0.39 1.42 16 15 C -0.11 -1.84 5.36 -26.69 -0.14 -1.98 16 16 C -0.14 -2.60 6.08 -26.63 -0.16 -2.76 16 17 C 0.17 3.97 5.30 -3.73 -0.02 3.95 16 18 N -0.59 -15.11 2.99 -172.34 -0.52 -15.63 16 19 C -0.25 -7.05 9.58 -15.06 -0.14 -7.19 16 20 H 0.07 1.92 7.88 -52.49 -0.41 1.51 16 21 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 22 N -0.90 -26.51 11.20 55.49 0.62 -25.89 16 23 Si 0.90 22.27 29.59 -169.99 -5.03 17.24 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 C 0.14 3.15 6.09 -3.71 -0.02 3.13 16 28 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.37 7.66 -51.93 -0.40 -0.02 16 30 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 31 H 0.14 1.10 6.30 -52.49 -0.33 0.77 16 32 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.14 0.95 6.40 -52.49 -0.34 0.61 16 34 H 0.39 4.28 6.63 -40.82 -0.27 4.01 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.09 2.36 6.06 -51.93 -0.31 2.05 16 40 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 41 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.06 1.40 7.93 -51.93 -0.41 0.99 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 364.44 15.07 5.49 5.49 Total: -1.00 -33.90 364.44 -9.68 -43.57 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -5.78 Total: 0.97 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -2.09 Total: 1.95 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: -0.17 Total: -52.33 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -0.59 Total: -14.89 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.03 Total: 17.24 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.50 Total: -2.01 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.90 -9.68 -43.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008339010.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.743 kcal (2) G-P(sol) polarization free energy of solvation -33.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds