Wall clock time and date at job start Tue Mar 31 2020 21:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35654 * 117.00074 * 2 1 4 4 C 1.38651 * 120.14044 * 359.97438 * 3 2 1 5 5 C 1.38204 * 120.07181 * 180.02562 * 4 3 2 6 6 Cl 1.73596 * 119.81842 * 179.97438 * 5 4 3 7 7 C 1.38705 * 120.36537 * 0.02562 * 5 4 3 8 8 C 1.37731 * 120.28389 * 359.73655 * 7 5 4 9 9 C 1.39746 * 119.91840 * 0.51507 * 8 7 5 10 10 C 1.47475 * 120.17785 * 179.76684 * 9 8 7 11 11 O 1.21601 * 120.00429 * 179.72170 * 10 9 8 12 12 N 1.34779 * 120.00102 * 359.72387 * 10 9 8 13 13 C 1.46494 * 120.00105 * 180.02562 * 12 10 9 14 14 H 1.08996 * 109.52678 * 325.08145 * 13 12 10 15 15 C 1.53045 * 109.49690 * 204.99523 * 13 12 10 16 16 C 1.53039 * 109.52540 * 178.69031 * 15 13 12 17 17 C 1.53163 * 109.32922 * 61.37539 * 16 15 13 18 18 N 1.46926 * 108.76754 * 305.35710 * 17 16 15 19 19 C 1.36938 * 120.62731 * 233.63287 * 18 17 16 20 20 H 1.07993 * 120.00479 * 151.81165 * 19 18 17 21 21 C 1.38814 * 120.00043 * 331.80308 * 19 18 17 22 22 N 1.31627 * 119.99987 * 343.08763 * 21 19 18 23 23 Si 1.86799 * 119.99883 * 163.08155 * 21 19 18 24 24 H 1.48489 * 109.47406 * 0.02562 * 23 21 19 25 25 H 1.48509 * 109.46874 * 120.00550 * 23 21 19 26 26 H 1.48499 * 109.47144 * 240.00045 * 23 21 19 27 27 C 1.46921 * 118.74251 * 53.60327 * 18 17 16 28 28 H 1.09001 * 109.46921 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47598 * 299.99229 * 1 2 3 30 30 H 1.09000 * 109.47978 * 59.99997 * 1 2 3 31 31 H 1.07996 * 119.95941 * 359.97438 * 4 3 2 32 32 H 1.07990 * 119.85918 * 179.97438 * 7 5 4 33 33 H 1.07992 * 120.04161 * 180.25814 * 8 7 5 34 34 H 0.96999 * 119.99608 * 359.97438 * 12 10 9 35 35 H 1.08992 * 109.45897 * 298.70372 * 15 13 12 36 36 H 1.09001 * 109.45924 * 58.68093 * 15 13 12 37 37 H 1.09007 * 109.49919 * 181.31045 * 16 15 13 38 38 H 1.09001 * 109.50363 * 301.40761 * 16 15 13 39 39 H 1.08997 * 109.59196 * 185.56564 * 17 16 15 40 40 H 1.09009 * 109.59041 * 65.13564 * 17 16 15 41 41 H 0.96996 * 119.99377 * 179.97438 * 22 21 19 42 42 H 1.08996 * 109.58667 * 186.60713 * 27 18 17 43 43 H 1.09006 * 109.58085 * 66.18205 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2925 2.3734 -0.0005 5 6 1.9214 3.6040 -0.0011 6 17 0.9731 5.0581 -0.0024 7 6 3.3062 3.6838 -0.0016 8 6 4.0680 2.5363 0.0039 9 6 3.4444 1.2857 -0.0009 10 6 4.2546 0.0534 -0.0003 11 8 3.7087 -1.0332 0.0006 12 7 5.6001 0.1315 -0.0008 13 6 6.4048 -1.0926 -0.0007 14 1 5.9013 -1.8596 0.5877 15 6 7.7782 -0.8010 0.6084 16 6 8.6078 -2.0867 0.6387 17 6 8.8116 -2.5924 -0.7926 18 7 7.4978 -2.7372 -1.4343 19 6 7.1323 -3.9218 -2.0159 20 1 6.0894 -4.1964 -2.0728 21 6 8.1023 -4.7698 -2.5326 22 7 9.3144 -4.3154 -2.7710 23 14 7.6874 -6.5559 -2.8894 24 1 6.2682 -6.8143 -2.5373 25 1 7.8973 -6.8339 -4.3331 26 1 8.5669 -7.4391 -2.0823 27 6 6.5835 -1.5872 -1.4396 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3635 0.5138 -0.8899 31 1 0.2139 2.3187 -0.0014 32 1 3.7891 4.6497 -0.0024 33 1 5.1458 2.6030 0.0076 34 1 6.0356 0.9982 -0.0019 35 1 8.2913 -0.0520 0.0053 36 1 7.6528 -0.4258 1.6241 37 1 9.5772 -1.8836 1.0938 38 1 8.0836 -2.8444 1.2211 39 1 9.3160 -3.5584 -0.7706 40 1 9.4140 -1.8759 -1.3511 41 1 9.9922 -4.9081 -3.1317 42 1 5.6178 -1.8900 -1.8444 43 1 7.0043 -0.7888 -2.0509 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008339010.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:23 Heat of formation + Delta-G solvation = -50.988880 kcal Electronic energy + Delta-G solvation = -26915.488141 eV Core-core repulsion = 22986.669293 eV Total energy + Delta-G solvation = -3928.818848 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.74263 -40.40446 -38.88013 -38.65763 -37.34100 -35.91214 -34.19963 -32.41600 -32.33074 -31.34644 -30.07608 -28.20979 -27.25713 -25.27521 -23.87288 -23.66325 -23.08097 -21.49908 -21.06518 -19.55825 -18.72054 -18.27893 -17.71648 -17.00474 -16.88680 -16.53198 -16.33177 -16.04329 -15.94306 -15.64467 -15.19973 -14.91433 -14.79508 -14.67555 -14.29922 -14.18039 -14.00644 -13.56495 -13.38687 -13.03436 -12.95910 -12.83795 -12.77164 -12.53721 -12.39200 -12.10467 -12.03294 -11.97054 -11.85504 -11.73908 -11.55863 -11.29465 -10.85536 -10.61924 -10.17164 -10.00487 -9.38008 -8.68543 -7.91030 -5.36701 -0.42445 0.20892 0.93466 1.42764 1.44277 1.56231 1.76259 2.10507 2.25005 2.50253 2.66815 3.22865 3.59486 3.61665 3.78500 3.86558 3.93564 3.98452 4.13694 4.22382 4.26856 4.32277 4.33081 4.47008 4.49715 4.58661 4.68094 4.81285 4.84602 4.93797 5.03240 5.04595 5.06011 5.14297 5.19469 5.29390 5.43564 5.48909 5.58130 5.63450 5.77528 6.26055 6.36933 6.63825 7.12786 7.32734 7.82459 8.32170 9.14634 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018467 B = 0.002586 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.884095 B =10826.724557 C =11765.531511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.311 6.311 3 C 0.179 3.821 4 C -0.213 4.213 5 C 0.026 3.974 6 Cl -0.050 7.050 7 C -0.151 4.151 8 C -0.023 4.023 9 C -0.189 4.189 10 C 0.551 3.449 11 O -0.567 6.567 12 N -0.704 5.704 13 C 0.144 3.856 14 H 0.055 0.945 15 C -0.104 4.104 16 C -0.130 4.130 17 C 0.171 3.829 18 N -0.608 5.608 19 C -0.266 4.266 20 H 0.050 0.950 21 C -0.044 4.044 22 N -0.929 5.929 23 Si 0.965 3.035 24 H -0.275 1.275 25 H -0.287 1.287 26 H -0.282 1.282 27 C 0.146 3.854 28 H 0.109 0.891 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.162 0.838 32 H 0.171 0.829 33 H 0.173 0.827 34 H 0.414 0.586 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.046 0.954 39 H 0.054 0.946 40 H 0.007 0.993 41 H 0.253 0.747 42 H 0.025 0.975 43 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.820 22.026 9.504 27.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.222 6.222 3 C 0.130 3.870 4 C -0.232 4.232 5 C -0.001 4.001 6 Cl -0.021 7.021 7 C -0.170 4.170 8 C -0.042 4.042 9 C -0.193 4.193 10 C 0.340 3.660 11 O -0.446 6.446 12 N -0.357 5.357 13 C 0.037 3.963 14 H 0.073 0.927 15 C -0.141 4.141 16 C -0.169 4.169 17 C 0.046 3.954 18 N -0.332 5.332 19 C -0.397 4.397 20 H 0.068 0.932 21 C -0.240 4.240 22 N -0.574 5.574 23 Si 0.793 3.207 24 H -0.200 1.200 25 H -0.214 1.214 26 H -0.209 1.209 27 C 0.019 3.981 28 H 0.127 0.873 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.179 0.821 32 H 0.189 0.811 33 H 0.190 0.810 34 H 0.252 0.748 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.025 0.975 41 H 0.062 0.938 42 H 0.044 0.956 43 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -14.093 21.083 9.435 27.058 hybrid contribution -0.345 -0.830 -0.645 1.106 sum -14.439 20.253 8.790 26.380 Atomic orbital electron populations 1.23475 0.76458 1.05613 1.02852 1.86408 1.23362 1.25937 1.86523 1.19142 0.91157 0.85071 0.91640 1.21182 1.01784 0.89696 1.10534 1.21027 0.92638 0.87449 0.98964 1.98400 1.72201 1.35111 1.96382 1.21208 0.90935 1.00589 1.04270 1.21429 1.01702 0.88713 0.92339 1.19545 0.91006 0.94301 1.14444 1.18433 0.82613 0.88871 0.76129 1.90837 1.72438 1.30776 1.50581 1.45756 1.05138 1.10003 1.74835 1.21240 0.91955 0.86101 0.96974 0.92673 1.21616 0.92766 0.98185 1.01581 1.22016 1.00214 0.96916 0.97791 1.20730 0.85763 0.99057 0.89860 1.44234 1.15400 1.08994 1.64522 1.19403 0.92427 0.96051 1.31793 0.93201 1.25724 0.96620 1.02877 0.98759 1.70170 1.04185 1.35166 1.47900 0.85252 0.77698 0.80546 0.77235 1.20018 1.21397 1.20860 1.21207 0.92609 0.89538 0.94755 0.87299 0.90575 0.90910 0.82066 0.81142 0.80994 0.74816 0.90228 0.89314 0.89542 0.93564 0.92783 0.97491 0.93829 0.95626 0.95941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.81 113.37 1.11 1.28 16 2 O -0.31 -8.88 8.57 -68.76 -0.59 -9.47 16 3 C 0.18 4.43 6.70 22.84 0.15 4.58 16 4 C -0.21 -3.78 8.80 22.36 0.20 -3.58 16 5 C 0.03 0.40 6.32 22.37 0.14 0.55 16 6 Cl -0.05 -0.65 28.94 -2.72 -0.08 -0.73 16 7 C -0.15 -1.97 9.80 22.26 0.22 -1.76 16 8 C -0.02 -0.36 9.53 22.51 0.21 -0.15 16 9 C -0.19 -4.72 5.89 -20.01 -0.12 -4.84 16 10 C 0.55 18.22 7.73 86.68 0.67 18.89 16 11 O -0.57 -24.89 14.82 16.90 0.25 -24.64 16 12 N -0.70 -19.89 5.03 -445.38 -2.24 -22.13 16 13 C 0.14 5.20 2.60 45.07 0.12 5.31 16 14 H 0.05 2.38 7.58 -2.39 -0.02 2.36 16 15 C -0.10 -3.04 5.36 30.62 0.16 -2.88 16 16 C -0.13 -4.67 6.08 30.66 0.19 -4.48 16 17 C 0.17 8.25 5.30 86.35 0.46 8.70 16 18 N -0.61 -32.35 2.99 -699.15 -2.09 -34.44 16 19 C -0.27 -15.83 9.58 84.03 0.81 -15.03 16 20 H 0.05 3.05 7.88 -2.91 -0.02 3.03 16 21 C -0.04 -2.56 4.92 84.86 0.42 -2.14 16 22 N -0.93 -55.77 11.20 21.65 0.24 -55.52 16 23 Si 0.96 47.01 29.59 68.60 2.03 49.04 16 24 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 25 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 26 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 27 C 0.15 6.66 6.09 86.36 0.53 7.19 16 28 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.08 0.95 7.66 -2.39 -0.02 0.93 16 30 H 0.07 0.96 7.66 -2.39 -0.02 0.94 16 31 H 0.16 2.15 6.30 -2.91 -0.02 2.13 16 32 H 0.17 1.22 8.06 -2.92 -0.02 1.19 16 33 H 0.17 1.54 6.40 -2.91 -0.02 1.53 16 34 H 0.41 7.82 6.63 -92.71 -0.61 7.20 16 35 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.09 2.58 8.14 -2.38 -0.02 2.56 16 38 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.05 2.96 6.06 -2.39 -0.01 2.95 16 40 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 41 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 42 H 0.03 1.30 7.93 -2.39 -0.02 1.28 16 43 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 Total: -1.00 -79.04 364.44 3.21 -75.83 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 0.43 Total: 10.41 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: 5.26 Total: 11.66 kcal Atomic # 7 Polarization: -108.01 SS G_CDS: -4.09 Total: -112.10 kcal Atomic # 8 Polarization: -33.77 SS G_CDS: -0.34 Total: -34.11 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -0.08 Total: -0.73 kcal Total: -79.04 3.21 -75.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008339010.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.840 kcal (2) G-P(sol) polarization free energy of solvation -79.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds