Wall clock time and date at job start Tue Mar 31 2020 21:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35680 * 116.99809 * 2 1 4 4 C 1.38694 * 120.13705 * 0.02562 * 3 2 1 5 5 C 1.38058 * 120.09588 * 179.97438 * 4 3 2 6 6 C 1.38640 * 120.37796 * 359.97438 * 5 4 3 7 7 Cl 1.73601 * 119.86226 * 180.02562 * 6 5 4 8 8 C 1.37888 * 120.27669 * 359.76244 * 6 5 4 9 9 C 1.39714 * 119.88931 * 0.51554 * 8 6 5 10 10 C 1.47544 * 120.18457 * 179.74462 * 9 8 6 11 11 O 1.21587 * 120.00111 * 179.72846 * 10 9 8 12 12 N 1.34777 * 119.99745 * 359.71893 * 10 9 8 13 13 C 1.46498 * 119.99637 * 180.02562 * 12 10 9 14 14 H 1.08992 * 109.52612 * 325.08225 * 13 12 10 15 15 C 1.53039 * 109.49666 * 204.99948 * 13 12 10 16 16 C 1.53040 * 109.54124 * 178.68363 * 15 13 12 17 17 C 1.53198 * 109.31222 * 61.36517 * 16 15 13 18 18 N 1.46930 * 108.77449 * 305.36725 * 17 16 15 19 19 C 1.36933 * 120.63043 * 233.58316 * 18 17 16 20 20 H 1.08003 * 119.99602 * 152.01588 * 19 18 17 21 21 C 1.38813 * 119.99855 * 332.01930 * 19 18 17 22 22 N 1.31609 * 120.00205 * 342.86851 * 21 19 18 23 23 Si 1.86800 * 119.99751 * 162.87114 * 21 19 18 24 24 H 1.48499 * 109.47419 * 266.22629 * 23 21 19 25 25 H 1.48504 * 109.47123 * 146.22570 * 23 21 19 26 26 H 1.48502 * 109.47201 * 26.22592 * 23 21 19 27 27 C 1.46927 * 118.73585 * 53.85922 * 18 17 16 28 28 H 1.09005 * 109.47324 * 299.99951 * 1 2 3 29 29 H 1.09000 * 109.47666 * 59.99620 * 1 2 3 30 30 H 1.08995 * 109.47582 * 180.02562 * 1 2 3 31 31 H 1.07994 * 119.95477 * 0.02562 * 4 3 2 32 32 H 1.07996 * 119.80577 * 180.02562 * 5 4 3 33 33 H 1.08000 * 120.05961 * 180.25168 * 8 6 5 34 34 H 0.96999 * 119.99925 * 0.02562 * 12 10 9 35 35 H 1.08998 * 109.45908 * 58.66176 * 15 13 12 36 36 H 1.08998 * 109.46246 * 298.70524 * 15 13 12 37 37 H 1.08998 * 109.49616 * 301.41601 * 16 15 13 38 38 H 1.08995 * 109.50042 * 181.31845 * 16 15 13 39 39 H 1.08995 * 109.58834 * 185.57941 * 17 16 15 40 40 H 1.09002 * 109.58509 * 65.15516 * 17 16 15 41 41 H 0.97001 * 120.00309 * 179.97438 * 22 21 19 42 42 H 1.09004 * 109.58859 * 65.93053 * 27 18 17 43 43 H 1.09008 * 109.58209 * 186.35024 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2923 2.3739 0.0005 5 6 1.9199 3.6036 0.0011 6 6 3.3039 3.6843 0.0016 7 17 4.0792 5.2376 0.0030 8 6 4.0673 2.5360 0.0066 9 6 3.4441 1.2856 0.0001 10 6 4.2546 0.0528 -0.0003 11 8 3.7087 -1.0337 -0.0009 12 7 5.6001 0.1309 -0.0002 13 6 6.4048 -1.0932 -0.0013 14 1 5.9011 -1.8608 0.5861 15 6 7.7779 -0.8023 0.6086 16 6 8.6077 -2.0879 0.6382 17 6 8.8118 -2.5922 -0.7940 18 7 7.4982 -2.7364 -1.4363 19 6 7.1333 -3.9200 -2.0201 20 1 6.0901 -4.1931 -2.0806 21 6 8.1041 -4.7687 -2.5342 22 7 9.3162 -4.3145 -2.7720 23 14 7.6899 -6.5554 -2.8885 24 1 8.0506 -7.3895 -1.7140 25 1 8.4548 -7.0149 -4.0755 26 1 6.2350 -6.6823 -3.1576 27 6 6.5862 -1.5845 -1.4455 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 0.2137 2.3191 0.0014 32 1 1.3293 4.5077 0.0019 33 1 5.1452 2.6030 0.0111 34 1 6.0355 0.9977 0.0005 35 1 7.6521 -0.4280 1.6246 36 1 8.2913 -0.0526 0.0066 37 1 8.0832 -2.8462 1.2196 38 1 9.5768 -1.8851 1.0940 39 1 9.3162 -3.5582 -0.7728 40 1 9.4145 -1.8751 -1.3514 41 1 9.9947 -4.9077 -3.1308 42 1 7.0110 -0.7869 -2.0551 43 1 5.6216 -1.8855 -1.8545 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009424822.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:29 Heat of formation + Delta-G solvation = -29.759671 kcal Electronic energy + Delta-G solvation = -26988.505578 eV Core-core repulsion = 23060.607297 eV Total energy + Delta-G solvation = -3927.898281 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.81257 -39.15366 -37.95684 -37.18713 -36.40271 -34.26717 -32.58854 -31.64112 -30.41180 -30.27216 -28.58656 -27.45121 -25.23823 -24.39793 -22.61156 -22.10295 -21.77580 -20.25207 -19.50490 -18.54538 -17.34314 -16.88506 -16.60590 -16.06096 -15.67024 -15.36169 -15.05793 -14.71377 -14.62179 -14.08686 -13.97499 -13.63217 -13.56814 -13.29110 -13.02851 -12.86160 -12.44683 -12.36008 -12.21691 -12.12383 -11.77863 -11.61773 -11.28542 -11.05239 -10.97570 -10.83721 -10.76917 -10.22035 -10.17673 -9.89818 -9.86569 -9.58654 -9.51507 -9.45909 -8.76769 -8.46452 -8.33924 -6.62485 -5.74013 -3.16410 0.49394 0.84185 1.81525 2.76562 2.97201 3.32496 3.43161 3.49752 3.52876 3.63906 4.27803 4.31480 4.56180 4.62378 4.82907 4.88038 4.89713 5.05258 5.24667 5.28764 5.35813 5.40944 5.45934 5.58273 5.65804 5.72996 5.75146 5.77908 6.07914 6.13192 6.20017 6.28532 6.57150 6.65428 6.72503 6.74427 6.88912 7.02398 7.07098 7.40004 7.68595 7.78759 7.88000 8.47455 8.53612 9.26822 9.89036 10.44998 11.34581 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014485 B = 0.002901 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.505597 B = 9650.806262 C =10980.093967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.272 6.272 3 C 0.190 3.810 4 C -0.209 4.209 5 C -0.047 4.047 6 C -0.084 4.084 7 Cl -0.068 7.068 8 C -0.038 4.038 9 C -0.153 4.153 10 C 0.556 3.444 11 O -0.510 6.510 12 N -0.720 5.720 13 C 0.128 3.872 14 H 0.088 0.912 15 C -0.115 4.115 16 C -0.139 4.139 17 C 0.167 3.833 18 N -0.588 5.588 19 C -0.249 4.249 20 H 0.067 0.933 21 C 0.002 3.998 22 N -0.904 5.904 23 Si 0.903 3.097 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.278 1.278 27 C 0.142 3.858 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.105 0.895 31 H 0.144 0.856 32 H 0.139 0.861 33 H 0.144 0.856 34 H 0.391 0.609 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.089 0.911 40 H 0.019 0.981 41 H 0.253 0.747 42 H 0.018 0.982 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.310 18.976 8.366 25.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.183 6.183 3 C 0.140 3.860 4 C -0.228 4.228 5 C -0.066 4.066 6 C -0.111 4.111 7 Cl -0.039 7.039 8 C -0.058 4.058 9 C -0.157 4.157 10 C 0.341 3.659 11 O -0.385 6.385 12 N -0.372 5.372 13 C 0.023 3.977 14 H 0.106 0.894 15 C -0.153 4.153 16 C -0.179 4.179 17 C 0.042 3.958 18 N -0.311 5.311 19 C -0.379 4.379 20 H 0.085 0.915 21 C -0.196 4.196 22 N -0.549 5.549 23 Si 0.733 3.267 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.203 1.203 27 C 0.015 3.985 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.124 0.876 31 H 0.161 0.839 32 H 0.157 0.843 33 H 0.161 0.839 34 H 0.226 0.774 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.107 0.893 40 H 0.037 0.963 41 H 0.063 0.937 42 H 0.036 0.964 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.423 17.968 8.273 24.481 hybrid contribution -0.083 -0.010 -0.243 0.257 sum -14.506 17.958 8.030 24.442 Atomic orbital electron populations 1.23223 0.78502 1.04737 1.01145 1.86456 1.20916 1.24864 1.86021 1.19136 0.91039 0.85158 0.90621 1.21196 1.00688 0.91199 1.09747 1.20960 0.92363 0.98148 0.95100 1.20585 0.92910 0.86792 1.10789 1.98375 1.81111 1.27150 1.97260 1.21075 1.00363 0.89380 0.94956 1.19462 0.91066 0.93907 1.11289 1.17786 0.82281 0.88150 0.77662 1.90867 1.71390 1.28187 1.48056 1.46060 1.05634 1.10193 1.75288 1.21841 0.90235 0.85234 1.00436 0.89441 1.21683 0.95160 0.99206 0.99280 1.22178 0.98061 0.95941 1.01724 1.20839 0.87087 1.00951 0.86946 1.44019 1.14420 1.08699 1.63922 1.19258 0.92873 0.94377 1.31362 0.91511 1.25026 0.96679 0.99310 0.98631 1.70037 1.03528 1.34078 1.47263 0.86257 0.77838 0.85255 0.77371 1.21456 1.21829 1.20316 1.21280 0.94967 0.90462 0.91826 0.92514 0.92422 0.87650 0.83884 0.84306 0.83866 0.77439 0.93071 0.92244 0.92407 0.92731 0.89305 0.96325 0.93710 0.96449 0.92339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 101.05 0.99 1.14 16 2 O -0.27 -3.67 8.57 -40.63 -0.35 -4.01 16 3 C 0.19 2.31 6.70 -38.71 -0.26 2.05 16 4 C -0.21 -1.82 9.03 -39.48 -0.36 -2.17 16 5 C -0.05 -0.38 9.81 -39.50 -0.39 -0.76 16 6 C -0.08 -0.78 6.31 -39.56 -0.25 -1.03 16 7 Cl -0.07 -0.58 28.94 -51.86 -1.50 -2.08 16 8 C -0.04 -0.40 9.31 -39.16 -0.36 -0.76 16 9 C -0.15 -2.00 5.89 -104.84 -0.62 -2.62 16 10 C 0.56 9.18 7.73 -12.47 -0.10 9.09 16 11 O -0.51 -10.58 14.82 -16.60 -0.25 -10.83 16 12 N -0.72 -10.85 5.03 -54.51 -0.27 -11.12 16 13 C 0.13 2.35 2.62 -67.59 -0.18 2.17 16 14 H 0.09 1.84 7.58 -51.93 -0.39 1.45 16 15 C -0.12 -1.88 5.35 -26.69 -0.14 -2.02 16 16 C -0.14 -2.63 6.08 -26.61 -0.16 -2.79 16 17 C 0.17 4.00 5.30 -3.71 -0.02 3.98 16 18 N -0.59 -15.20 2.99 -172.04 -0.51 -15.71 16 19 C -0.25 -7.11 9.58 -15.06 -0.14 -7.26 16 20 H 0.07 1.93 7.89 -52.48 -0.41 1.51 16 21 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 22 N -0.90 -26.57 11.20 55.49 0.62 -25.95 16 23 Si 0.90 22.33 29.59 -169.99 -5.03 17.30 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 C 0.14 3.18 6.12 -3.49 -0.02 3.16 16 28 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 29 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 30 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.14 0.84 6.30 -52.49 -0.33 0.51 16 32 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.14 1.22 6.40 -52.49 -0.34 0.88 16 34 H 0.39 4.57 6.63 -40.82 -0.27 4.30 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.09 2.38 6.05 -51.93 -0.31 2.06 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 1.41 7.93 -51.92 -0.41 1.00 16 LS Contribution 364.48 15.07 5.49 5.49 Total: -1.00 -33.89 364.48 -9.67 -43.56 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -5.78 Total: 1.21 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -2.09 Total: 2.14 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: -0.17 Total: -52.78 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.59 Total: -14.85 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.03 Total: 17.30 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.50 Total: -2.08 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.89 -9.67 -43.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009424822.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.805 kcal (2) G-P(sol) polarization free energy of solvation -33.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds