Wall clock time and date at job start Tue Mar 31 2020 21:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35680 * 116.99809 * 2 1 4 4 C 1.38694 * 120.13705 * 0.02562 * 3 2 1 5 5 C 1.38058 * 120.09588 * 179.97438 * 4 3 2 6 6 C 1.38640 * 120.37796 * 359.97438 * 5 4 3 7 7 Cl 1.73601 * 119.86226 * 180.02562 * 6 5 4 8 8 C 1.37888 * 120.27669 * 359.76244 * 6 5 4 9 9 C 1.39714 * 119.88931 * 0.51554 * 8 6 5 10 10 C 1.47544 * 120.18457 * 179.74462 * 9 8 6 11 11 O 1.21587 * 120.00111 * 179.72846 * 10 9 8 12 12 N 1.34777 * 119.99745 * 359.71893 * 10 9 8 13 13 C 1.46498 * 119.99637 * 180.02562 * 12 10 9 14 14 H 1.08992 * 109.52612 * 325.08225 * 13 12 10 15 15 C 1.53039 * 109.49666 * 204.99948 * 13 12 10 16 16 C 1.53040 * 109.54124 * 178.68363 * 15 13 12 17 17 C 1.53198 * 109.31222 * 61.36517 * 16 15 13 18 18 N 1.46930 * 108.77449 * 305.36725 * 17 16 15 19 19 C 1.36933 * 120.63043 * 233.58316 * 18 17 16 20 20 H 1.08003 * 119.99602 * 152.01588 * 19 18 17 21 21 C 1.38813 * 119.99855 * 332.01930 * 19 18 17 22 22 N 1.31609 * 120.00205 * 342.86851 * 21 19 18 23 23 Si 1.86800 * 119.99751 * 162.87114 * 21 19 18 24 24 H 1.48499 * 109.47419 * 266.22629 * 23 21 19 25 25 H 1.48504 * 109.47123 * 146.22570 * 23 21 19 26 26 H 1.48502 * 109.47201 * 26.22592 * 23 21 19 27 27 C 1.46927 * 118.73585 * 53.85922 * 18 17 16 28 28 H 1.09005 * 109.47324 * 299.99951 * 1 2 3 29 29 H 1.09000 * 109.47666 * 59.99620 * 1 2 3 30 30 H 1.08995 * 109.47582 * 180.02562 * 1 2 3 31 31 H 1.07994 * 119.95477 * 0.02562 * 4 3 2 32 32 H 1.07996 * 119.80577 * 180.02562 * 5 4 3 33 33 H 1.08000 * 120.05961 * 180.25168 * 8 6 5 34 34 H 0.96999 * 119.99925 * 0.02562 * 12 10 9 35 35 H 1.08998 * 109.45908 * 58.66176 * 15 13 12 36 36 H 1.08998 * 109.46246 * 298.70524 * 15 13 12 37 37 H 1.08998 * 109.49616 * 301.41601 * 16 15 13 38 38 H 1.08995 * 109.50042 * 181.31845 * 16 15 13 39 39 H 1.08995 * 109.58834 * 185.57941 * 17 16 15 40 40 H 1.09002 * 109.58509 * 65.15516 * 17 16 15 41 41 H 0.97001 * 120.00309 * 179.97438 * 22 21 19 42 42 H 1.09004 * 109.58859 * 65.93053 * 27 18 17 43 43 H 1.09008 * 109.58209 * 186.35024 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2923 2.3739 0.0005 5 6 1.9199 3.6036 0.0011 6 6 3.3039 3.6843 0.0016 7 17 4.0792 5.2376 0.0030 8 6 4.0673 2.5360 0.0066 9 6 3.4441 1.2856 0.0001 10 6 4.2546 0.0528 -0.0003 11 8 3.7087 -1.0337 -0.0009 12 7 5.6001 0.1309 -0.0002 13 6 6.4048 -1.0932 -0.0013 14 1 5.9011 -1.8608 0.5861 15 6 7.7779 -0.8023 0.6086 16 6 8.6077 -2.0879 0.6382 17 6 8.8118 -2.5922 -0.7940 18 7 7.4982 -2.7364 -1.4363 19 6 7.1333 -3.9200 -2.0201 20 1 6.0901 -4.1931 -2.0806 21 6 8.1041 -4.7687 -2.5342 22 7 9.3162 -4.3145 -2.7720 23 14 7.6899 -6.5554 -2.8885 24 1 8.0506 -7.3895 -1.7140 25 1 8.4548 -7.0149 -4.0755 26 1 6.2350 -6.6823 -3.1576 27 6 6.5862 -1.5845 -1.4455 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 0.2137 2.3191 0.0014 32 1 1.3293 4.5077 0.0019 33 1 5.1452 2.6030 0.0111 34 1 6.0355 0.9977 0.0005 35 1 7.6521 -0.4280 1.6246 36 1 8.2913 -0.0526 0.0066 37 1 8.0832 -2.8462 1.2196 38 1 9.5768 -1.8851 1.0940 39 1 9.3162 -3.5582 -0.7728 40 1 9.4145 -1.8751 -1.3514 41 1 9.9947 -4.9077 -3.1308 42 1 7.0110 -0.7869 -2.0551 43 1 5.6216 -1.8855 -1.8545 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009424822.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:29 Heat of formation + Delta-G solvation = -50.888899 kcal Electronic energy + Delta-G solvation = -26989.421810 eV Core-core repulsion = 23060.607297 eV Total energy + Delta-G solvation = -3928.814513 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.74586 -40.39714 -38.89241 -38.65100 -37.13634 -35.92915 -34.23817 -32.66668 -32.34448 -31.02613 -30.11259 -28.15431 -27.26513 -25.43102 -23.87919 -23.67066 -22.98286 -21.52910 -21.09060 -19.51018 -18.72819 -18.30181 -17.70920 -16.99329 -16.85332 -16.58573 -16.42016 -16.03582 -15.84910 -15.65528 -15.21602 -14.87994 -14.80795 -14.68752 -14.25881 -14.17515 -14.00953 -13.55811 -13.40346 -13.04132 -13.01544 -12.82701 -12.76394 -12.55740 -12.31316 -12.12638 -11.99709 -11.96718 -11.73971 -11.66784 -11.57801 -11.31509 -10.86383 -10.62290 -10.33070 -10.07837 -9.23897 -8.69895 -7.91200 -5.37343 -0.32500 0.09561 1.10918 1.43652 1.44778 1.54900 1.77480 2.08716 2.27536 2.50010 2.64342 3.22410 3.49241 3.61176 3.73485 3.85185 3.92062 4.06620 4.11092 4.24170 4.28829 4.30265 4.38064 4.47900 4.56159 4.58988 4.63101 4.74111 4.80770 4.91904 5.01478 5.02462 5.04236 5.12529 5.17284 5.27005 5.37884 5.46813 5.55944 5.62368 5.76001 6.30107 6.36131 6.59336 7.11981 7.28374 7.81363 8.31669 9.14250 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014485 B = 0.002901 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.505597 B = 9650.806262 C =10980.093967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.314 6.314 3 C 0.173 3.827 4 C -0.199 4.199 5 C -0.032 4.032 6 C -0.089 4.089 7 Cl -0.058 7.058 8 C -0.034 4.034 9 C -0.183 4.183 10 C 0.553 3.447 11 O -0.564 6.564 12 N -0.707 5.707 13 C 0.144 3.856 14 H 0.057 0.943 15 C -0.105 4.105 16 C -0.129 4.129 17 C 0.172 3.828 18 N -0.607 5.607 19 C -0.269 4.269 20 H 0.051 0.949 21 C -0.043 4.043 22 N -0.928 5.928 23 Si 0.966 3.034 24 H -0.281 1.281 25 H -0.288 1.288 26 H -0.276 1.276 27 C 0.146 3.854 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.105 0.895 31 H 0.175 0.825 32 H 0.172 0.828 33 H 0.158 0.842 34 H 0.411 0.589 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.047 0.953 38 H 0.086 0.914 39 H 0.055 0.945 40 H 0.006 0.994 41 H 0.253 0.747 42 H 0.021 0.979 43 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.247 21.723 9.476 28.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.226 6.226 3 C 0.124 3.876 4 C -0.218 4.218 5 C -0.051 4.051 6 C -0.116 4.116 7 Cl -0.029 7.029 8 C -0.053 4.053 9 C -0.187 4.187 10 C 0.341 3.659 11 O -0.443 6.443 12 N -0.360 5.360 13 C 0.038 3.962 14 H 0.076 0.924 15 C -0.143 4.143 16 C -0.169 4.169 17 C 0.047 3.953 18 N -0.331 5.331 19 C -0.399 4.399 20 H 0.069 0.931 21 C -0.239 4.239 22 N -0.574 5.574 23 Si 0.794 3.206 24 H -0.208 1.208 25 H -0.214 1.214 26 H -0.201 1.201 27 C 0.019 3.981 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.124 0.876 31 H 0.192 0.808 32 H 0.189 0.811 33 H 0.175 0.825 34 H 0.249 0.751 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.066 0.934 38 H 0.105 0.895 39 H 0.073 0.927 40 H 0.024 0.976 41 H 0.062 0.938 42 H 0.039 0.961 43 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -15.356 20.782 9.400 27.496 hybrid contribution 0.123 -0.764 -0.628 0.996 sum -15.234 20.018 8.772 26.641 Atomic orbital electron populations 1.23500 0.76221 1.05569 1.03143 1.86402 1.23581 1.26281 1.86298 1.19457 0.91080 0.85976 0.91114 1.21493 1.02028 0.89981 1.08285 1.21379 0.92112 0.99074 0.92540 1.20701 0.93544 0.86792 1.10514 1.98385 1.81095 1.26259 1.97204 1.21149 1.01178 0.88715 0.94270 1.19252 0.91444 0.93095 1.14887 1.18393 0.82538 0.88831 0.76145 1.90831 1.72353 1.30515 1.50570 1.45810 1.05305 1.09994 1.74850 1.21337 0.91876 0.85988 0.97025 0.92440 1.21622 0.92888 0.98250 1.01500 1.22017 1.00174 0.96822 0.97866 1.20727 0.85757 0.99053 0.89797 1.44246 1.15528 1.08918 1.64418 1.19405 0.92468 0.96091 1.31979 0.93084 1.25728 0.96586 1.02919 0.98653 1.70163 1.04177 1.35201 1.47849 0.85281 0.77593 0.80472 0.77266 1.20785 1.21390 1.20058 1.21293 0.92710 0.89508 0.94613 0.90209 0.90535 0.87650 0.80784 0.81062 0.82498 0.75109 0.89415 0.90444 0.93442 0.89548 0.92681 0.97615 0.93808 0.96078 0.95465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.81 113.37 1.11 1.26 16 2 O -0.31 -8.61 8.57 -69.05 -0.59 -9.20 16 3 C 0.17 4.09 6.70 22.84 0.15 4.24 16 4 C -0.20 -2.89 9.03 22.34 0.20 -2.68 16 5 C -0.03 -0.40 9.81 22.32 0.22 -0.18 16 6 C -0.09 -1.39 6.31 22.28 0.14 -1.25 16 7 Cl -0.06 -0.82 28.94 -2.72 -0.08 -0.90 16 8 C -0.03 -0.64 9.31 22.54 0.21 -0.43 16 9 C -0.18 -4.73 5.89 -20.01 -0.12 -4.84 16 10 C 0.55 18.81 7.73 86.70 0.67 19.48 16 11 O -0.56 -24.87 14.82 16.94 0.25 -24.62 16 12 N -0.71 -21.16 5.03 -444.64 -2.24 -23.40 16 13 C 0.14 5.36 2.62 45.21 0.12 5.48 16 14 H 0.06 2.52 7.58 -2.39 -0.02 2.50 16 15 C -0.10 -3.21 5.35 30.62 0.16 -3.04 16 16 C -0.13 -4.75 6.08 30.67 0.19 -4.56 16 17 C 0.17 8.39 5.30 86.36 0.46 8.85 16 18 N -0.61 -32.67 2.99 -698.22 -2.09 -34.76 16 19 C -0.27 -16.08 9.58 84.03 0.81 -15.27 16 20 H 0.05 3.13 7.89 -2.91 -0.02 3.11 16 21 C -0.04 -2.51 4.91 84.86 0.42 -2.09 16 22 N -0.93 -56.01 11.20 21.65 0.24 -55.77 16 23 Si 0.97 47.11 29.59 68.60 2.03 49.14 16 24 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 25 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 26 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 27 C 0.15 6.78 6.12 86.51 0.53 7.31 16 28 H 0.08 0.78 7.66 -2.38 -0.02 0.76 16 29 H 0.08 0.81 7.66 -2.39 -0.02 0.80 16 30 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.17 1.34 6.30 -2.91 -0.02 1.32 16 32 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16 33 H 0.16 2.33 6.40 -2.91 -0.02 2.31 16 34 H 0.41 8.93 6.63 -92.71 -0.62 8.31 16 35 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.09 2.64 8.14 -2.39 -0.02 2.63 16 39 H 0.05 3.04 6.05 -2.39 -0.01 3.03 16 40 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 41 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 42 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 43 H 0.03 1.39 7.93 -2.38 -0.02 1.37 16 Total: -1.00 -78.91 364.48 3.23 -75.69 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 0.43 Total: 11.56 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: 5.27 Total: 12.27 kcal Atomic # 7 Polarization: -109.85 SS G_CDS: -4.08 Total: -113.93 kcal Atomic # 8 Polarization: -33.48 SS G_CDS: -0.34 Total: -33.83 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -0.08 Total: -0.90 kcal Total: -78.91 3.23 -75.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009424822.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.799 kcal (2) G-P(sol) polarization free energy of solvation -78.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds