Wall clock time and date at job start Tue Mar 31 2020 21:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35726 * 116.99897 * 2 1 4 4 C 1.38980 * 119.91781 * 0.02562 * 3 2 1 5 5 C 1.37707 * 120.10424 * 179.97438 * 4 3 2 6 6 C 1.39741 * 119.93245 * 0.02782 * 5 4 3 7 7 C 1.47599 * 120.08293 * 180.02562 * 6 5 4 8 8 O 1.21586 * 120.00131 * 359.97438 * 7 6 5 9 9 N 1.34782 * 119.99782 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99654 * 179.97438 * 9 7 6 11 11 H 1.09004 * 109.52515 * 35.08708 * 10 9 7 12 12 C 1.53046 * 109.49486 * 155.16364 * 10 9 7 13 13 C 1.53042 * 109.53839 * 181.31752 * 12 10 9 14 14 C 1.53622 * 109.24061 * 298.51349 * 13 12 10 15 15 N 1.46929 * 108.54313 * 54.85866 * 14 13 12 16 16 C 1.36932 * 120.62979 * 126.36900 * 15 14 13 17 17 H 1.07998 * 119.99832 * 207.30184 * 16 15 14 18 18 C 1.38812 * 120.00249 * 27.30791 * 16 15 14 19 19 N 1.31622 * 120.00210 * 17.94732 * 18 16 15 20 20 Si 1.86806 * 119.99876 * 197.95366 * 18 16 15 21 21 H 1.48502 * 109.46721 * 265.36013 * 20 18 16 22 22 H 1.48498 * 109.46993 * 145.35903 * 20 18 16 23 23 H 1.48495 * 109.47043 * 25.35565 * 20 18 16 24 24 C 1.46929 * 118.73474 * 306.08773 * 15 14 13 25 25 C 1.39725 * 119.83331 * 0.26799 * 6 5 4 26 26 C 1.37822 * 119.89266 * 359.42878 * 25 6 5 27 27 Cl 1.73605 * 119.96609 * 180.31867 * 26 25 6 28 28 H 1.09004 * 109.46646 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46874 * 299.99009 * 1 2 3 30 30 H 1.08993 * 109.47647 * 59.99511 * 1 2 3 31 31 H 1.07994 * 119.94641 * 0.02562 * 4 3 2 32 32 H 1.07995 * 120.03618 * 180.02562 * 5 4 3 33 33 H 0.97001 * 120.00125 * 0.02562 * 9 7 6 34 34 H 1.08995 * 109.46151 * 301.34378 * 12 10 9 35 35 H 1.09003 * 109.45722 * 61.31187 * 12 10 9 36 36 H 1.08997 * 109.49388 * 58.58722 * 13 12 10 37 37 H 1.08996 * 109.49468 * 178.68318 * 13 12 10 38 38 H 1.08998 * 109.74246 * 295.11521 * 14 13 12 39 39 H 1.09002 * 109.66569 * 174.55032 * 14 13 12 40 40 H 0.97000 * 119.99991 * 180.02562 * 19 18 16 41 41 H 1.09007 * 109.58157 * 173.65337 * 24 15 14 42 42 H 1.08997 * 109.58981 * 294.07069 * 24 15 14 43 43 H 1.07997 * 120.05558 * 179.73374 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2866 2.3738 0.0005 5 6 1.9077 3.6028 0.0011 6 6 3.3031 3.6789 0.0005 7 6 3.9723 4.9944 0.0016 8 8 3.3095 6.0137 0.0026 9 7 5.3182 5.0658 0.0016 10 6 5.9825 6.3716 0.0021 11 1 5.3984 7.0772 0.5931 12 6 7.3811 6.2329 0.6080 13 6 8.0634 7.6024 0.6392 14 6 8.2089 8.1284 -0.7968 15 7 6.8833 8.1295 -1.4305 16 6 6.3879 9.2669 -2.0101 17 1 5.3207 9.4199 -2.0734 18 6 7.2574 10.2233 -2.5162 19 7 8.5103 9.9069 -2.7667 20 14 6.6495 11.9594 -2.8417 21 1 6.2390 12.0816 -4.2637 22 1 7.7390 12.9271 -2.5561 23 1 5.4871 12.2494 -1.9643 24 6 6.1020 6.8851 -1.4361 25 6 4.0631 2.5065 -0.0063 26 6 3.4342 1.2801 -0.0005 27 17 4.3767 -0.1778 -0.0006 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 0.2083 2.3147 0.0014 32 1 1.3172 4.5070 0.0019 33 1 5.8471 4.2526 0.0004 34 1 7.3002 5.8442 1.6231 35 1 7.9727 5.5464 0.0023 36 1 7.4597 8.2964 1.2241 37 1 9.0502 7.5069 1.0922 38 1 8.8824 7.4819 -1.3593 39 1 8.6053 9.1436 -0.7772 40 1 9.1179 10.5754 -3.1201 41 1 5.1078 7.0797 -1.8385 42 1 6.6071 6.1392 -2.0497 43 1 5.1417 2.5611 -0.0111 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009451783.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:06 Heat of formation + Delta-G solvation = -31.567257 kcal Electronic energy + Delta-G solvation = -26535.389559 eV Core-core repulsion = 22607.412895 eV Total energy + Delta-G solvation = -3927.976664 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.79756 -39.65221 -37.83480 -37.14251 -36.52011 -34.39303 -32.53915 -31.29506 -30.88517 -30.43467 -28.53468 -27.77618 -25.26927 -23.96361 -23.03930 -22.13201 -21.81734 -20.28177 -19.49901 -18.77907 -17.61534 -16.92940 -16.61746 -16.30906 -15.65143 -15.45596 -14.88440 -14.76546 -14.47785 -14.35687 -14.08937 -13.88385 -13.60272 -13.34269 -13.14081 -12.93890 -12.52608 -12.38090 -12.31680 -11.91988 -11.80642 -11.52496 -11.45142 -11.23099 -11.08195 -10.88965 -10.75713 -10.25672 -10.23828 -10.01660 -9.88996 -9.62123 -9.57146 -9.35846 -8.87702 -8.59034 -8.37459 -6.66182 -5.76811 -3.18048 0.53099 0.75651 1.81966 2.68176 2.68992 3.27402 3.40751 3.47731 3.52383 3.59510 4.24473 4.38199 4.52684 4.64085 4.69194 4.73020 4.78629 4.99270 5.03721 5.19576 5.30062 5.39020 5.49551 5.55598 5.62597 5.72258 5.74166 5.95120 6.07163 6.09726 6.16017 6.25011 6.53031 6.61566 6.65852 6.70083 6.73992 6.84342 6.99547 7.36793 7.65796 7.69184 7.85143 8.36393 8.48033 9.23842 9.86407 10.41938 11.31934 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.020062 B = 0.002432 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.350989 B =11511.025666 C =12333.616383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.303 6.303 3 C 0.158 3.842 4 C -0.207 4.207 5 C -0.014 4.014 6 C -0.153 4.153 7 C 0.558 3.442 8 O -0.531 6.531 9 N -0.717 5.717 10 C 0.126 3.874 11 H 0.088 0.912 12 C -0.115 4.115 13 C -0.139 4.139 14 C 0.167 3.833 15 N -0.588 5.588 16 C -0.249 4.249 17 H 0.067 0.933 18 C 0.001 3.999 19 N -0.904 5.904 20 Si 0.902 3.098 21 H -0.288 1.288 22 H -0.289 1.289 23 H -0.278 1.278 24 C 0.142 3.858 25 C -0.040 4.040 26 C -0.078 4.078 27 Cl -0.053 7.053 28 H 0.104 0.896 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.144 0.856 32 H 0.147 0.853 33 H 0.393 0.607 34 H 0.051 0.949 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.019 0.981 39 H 0.090 0.910 40 H 0.253 0.747 41 H 0.058 0.942 42 H 0.018 0.982 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.833 -21.502 8.347 25.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.215 6.215 3 C 0.110 3.890 4 C -0.225 4.225 5 C -0.033 4.033 6 C -0.157 4.157 7 C 0.344 3.656 8 O -0.408 6.408 9 N -0.367 5.367 10 C 0.021 3.979 11 H 0.106 0.894 12 C -0.154 4.154 13 C -0.179 4.179 14 C 0.041 3.959 15 N -0.310 5.310 16 C -0.379 4.379 17 H 0.085 0.915 18 C -0.197 4.197 19 N -0.549 5.549 20 Si 0.731 3.269 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.203 1.203 24 C 0.014 3.986 25 C -0.059 4.059 26 C -0.105 4.105 27 Cl -0.024 7.024 28 H 0.122 0.878 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.161 0.839 32 H 0.165 0.835 33 H 0.228 0.772 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.038 0.962 39 H 0.108 0.892 40 H 0.063 0.937 41 H 0.077 0.923 42 H 0.035 0.965 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.004 -20.953 8.267 25.524 hybrid contribution -0.089 0.369 -0.258 0.459 sum -12.094 -20.583 8.010 25.181 Atomic orbital electron populations 1.23189 0.77588 1.04524 1.01847 1.86127 1.21955 1.25842 1.87552 1.18915 0.90509 0.85282 0.94263 1.21201 1.00602 0.91204 1.09530 1.21202 0.93294 0.97981 0.90841 1.19946 0.94258 0.92912 1.08575 1.17957 0.82514 0.88138 0.76943 1.90821 1.64543 1.35858 1.49616 1.46081 1.05932 1.10166 1.74539 1.21794 0.92731 0.82781 1.00602 0.89388 1.21688 0.95146 0.99196 0.99326 1.22248 0.98776 0.95187 1.01711 1.20945 0.86501 1.01503 0.86950 1.44024 1.16648 1.05997 1.64369 1.19220 0.91785 0.95092 1.31795 0.91545 1.25012 0.96390 0.99594 0.98698 1.70047 1.04823 1.32918 1.47064 0.86284 0.77889 0.84647 0.78041 1.21479 1.21556 1.20331 1.21185 0.96341 0.89238 0.91809 1.21085 1.00495 0.89282 0.95054 1.19982 0.88809 0.88912 1.12809 1.98378 1.71590 1.35248 1.97158 0.87756 0.92145 0.92100 0.83866 0.83495 0.77227 0.93024 0.92200 0.92363 0.92709 0.96242 0.89215 0.93687 0.92341 0.96458 0.83825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.10 16 2 O -0.30 -2.64 9.94 -18.88 -0.19 -2.82 16 3 C 0.16 1.52 6.69 -39.00 -0.26 1.26 16 4 C -0.21 -1.79 9.01 -39.50 -0.36 -2.15 16 5 C -0.01 -0.15 9.58 -39.21 -0.38 -0.53 16 6 C -0.15 -1.85 5.87 -104.96 -0.62 -2.46 16 7 C 0.56 8.58 7.73 -12.44 -0.10 8.49 16 8 O -0.53 -10.29 16.00 5.29 0.08 -10.21 16 9 N -0.72 -10.29 5.03 -54.71 -0.28 -10.57 16 10 C 0.13 2.25 2.60 -67.81 -0.18 2.07 16 11 H 0.09 1.79 7.58 -51.93 -0.39 1.40 16 12 C -0.12 -1.84 5.35 -26.69 -0.14 -1.98 16 13 C -0.14 -2.58 6.10 -26.39 -0.16 -2.74 16 14 C 0.17 3.93 5.34 -3.49 -0.02 3.91 16 15 N -0.59 -14.97 2.99 -172.06 -0.51 -15.48 16 16 C -0.25 -7.03 9.58 -15.06 -0.14 -7.18 16 17 H 0.07 1.89 7.89 -52.49 -0.41 1.47 16 18 C 0.00 0.03 4.90 -17.43 -0.09 -0.05 16 19 N -0.90 -26.35 11.20 55.49 0.62 -25.73 16 20 Si 0.90 22.10 29.59 -169.99 -5.03 17.07 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 C 0.14 3.10 6.09 -3.71 -0.02 3.08 16 25 C -0.04 -0.41 9.31 -39.18 -0.36 -0.77 16 26 C -0.08 -0.80 6.33 -39.42 -0.25 -1.05 16 27 Cl -0.05 -0.52 28.49 -51.86 -1.48 -2.00 16 28 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.22 7.65 -51.93 -0.40 -0.18 16 30 H 0.06 0.23 7.65 -51.93 -0.40 -0.17 16 31 H 0.14 0.84 6.28 -52.49 -0.33 0.51 16 32 H 0.15 1.56 7.64 -52.49 -0.40 1.16 16 33 H 0.39 4.37 6.62 -40.82 -0.27 4.10 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.09 2.37 6.03 -51.93 -0.31 2.06 16 40 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.06 1.37 7.93 -51.93 -0.41 0.96 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.14 1.20 6.39 -52.49 -0.34 0.87 16 LS Contribution 365.84 15.07 5.51 5.51 Total: -1.00 -33.03 365.84 -9.10 -42.13 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -5.76 Total: 1.11 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -2.08 Total: 0.99 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: -0.17 Total: -51.78 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -0.10 Total: -13.03 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.03 Total: 17.07 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.48 Total: -2.00 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.03 -9.10 -42.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009451783.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.564 kcal (2) G-P(sol) polarization free energy of solvation -33.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds