Wall clock time and date at job start Tue Mar 31 2020 21:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35659 * 117.00085 * 2 1 4 4 C 1.38665 * 120.14244 * 0.02562 * 3 2 1 5 5 C 1.38102 * 120.11988 * 179.97438 * 4 3 2 6 6 C 1.38478 * 120.41253 * 359.97438 * 5 4 3 7 7 C 1.37961 * 120.28463 * 0.02562 * 6 5 4 8 8 Cl 1.73599 * 120.06272 * 180.27572 * 7 6 5 9 9 C 1.39850 * 119.87230 * 0.02562 * 7 6 5 10 10 C 1.47463 * 120.19895 * 180.02562 * 9 7 6 11 11 O 1.21598 * 120.00140 * 89.99676 * 10 9 7 12 12 N 1.34776 * 119.99850 * 269.99230 * 10 9 7 13 13 C 1.46503 * 120.00181 * 180.02562 * 12 10 9 14 14 H 1.08995 * 109.49469 * 324.93982 * 13 12 10 15 15 C 1.53037 * 109.49581 * 204.84230 * 13 12 10 16 16 C 1.53045 * 109.53621 * 178.68519 * 15 13 12 17 17 C 1.53188 * 109.31268 * 61.36292 * 16 15 13 18 18 N 1.46927 * 108.77623 * 305.36518 * 17 16 15 19 19 C 1.36939 * 120.63428 * 233.63261 * 18 17 16 20 20 H 1.08000 * 119.99571 * 27.66000 * 19 18 17 21 21 C 1.38811 * 120.00154 * 207.66679 * 19 18 17 22 22 N 1.31617 * 119.99973 * 17.35825 * 21 19 18 23 23 Si 1.86803 * 119.99747 * 197.36103 * 21 19 18 24 24 H 1.48494 * 109.47089 * 90.00028 * 23 21 19 25 25 H 1.48499 * 109.46855 * 209.99927 * 23 21 19 26 26 H 1.48500 * 109.47206 * 329.99871 * 23 21 19 27 27 C 1.46931 * 118.73875 * 53.60832 * 18 17 16 28 28 H 1.09004 * 109.46998 * 60.00270 * 1 2 3 29 29 H 1.08996 * 109.47625 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47414 * 300.00229 * 1 2 3 31 31 H 1.07999 * 119.93940 * 359.97438 * 4 3 2 32 32 H 1.08000 * 119.78874 * 179.97438 * 5 4 3 33 33 H 1.08001 * 119.85724 * 180.02562 * 6 5 4 34 34 H 0.97001 * 119.99628 * 0.02562 * 12 10 9 35 35 H 1.09000 * 109.46002 * 298.70138 * 15 13 12 36 36 H 1.08994 * 109.46569 * 58.66213 * 15 13 12 37 37 H 1.08995 * 109.49587 * 301.41308 * 16 15 13 38 38 H 1.08995 * 109.49872 * 181.31531 * 16 15 13 39 39 H 1.09006 * 109.58878 * 185.57978 * 17 16 15 40 40 H 1.09002 * 109.58837 * 65.15259 * 17 16 15 41 41 H 0.96998 * 119.99520 * 179.97438 * 22 21 19 42 42 H 1.09003 * 109.58565 * 186.60339 * 27 18 17 43 43 H 1.09003 * 109.58453 * 66.18217 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2925 2.3736 0.0005 5 6 1.9200 3.6038 0.0011 6 6 3.3024 3.6857 0.0016 7 6 4.0673 2.5375 0.0011 8 17 5.7999 2.6469 0.0090 9 6 3.4443 1.2855 -0.0005 10 6 4.2549 0.0536 -0.0005 11 8 4.5880 -0.4550 1.0525 12 7 4.6265 -0.5085 -1.1677 13 6 5.4314 -1.7326 -1.1678 14 1 6.1234 -1.7130 -0.3260 15 6 6.2199 -1.8253 -2.4761 16 6 7.0861 -3.0871 -2.4634 17 6 6.1835 -4.3200 -2.3544 18 7 5.3183 -4.1701 -1.1764 19 6 5.2664 -5.1485 -0.2196 20 1 6.1195 -5.7907 -0.0573 21 6 4.1175 -5.3148 0.5414 22 7 2.9796 -4.7904 0.1385 23 14 4.1866 -6.2830 2.1375 24 1 4.4987 -5.3636 3.2610 25 1 2.8733 -6.9325 2.3796 26 1 5.2426 -7.3225 2.0406 27 6 4.5101 -2.9502 -1.0441 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.2140 2.3186 0.0005 32 1 1.3288 4.5076 0.0011 33 1 3.7837 4.6525 0.0024 34 1 4.3610 -0.1025 -2.0078 35 1 5.5264 -1.8695 -3.3158 36 1 6.8582 -0.9478 -2.5785 37 1 7.7629 -3.0550 -1.6096 38 1 7.6649 -3.1403 -3.3854 39 1 6.7977 -5.2140 -2.2452 40 1 5.5691 -4.4035 -3.2508 41 1 2.1767 -4.9070 0.6702 42 1 4.0201 -2.9403 -0.0704 43 1 3.7592 -2.9220 -1.8337 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009627748.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:35 Heat of formation + Delta-G solvation = -29.384604 kcal Electronic energy + Delta-G solvation = -27856.608847 eV Core-core repulsion = 23928.726830 eV Total energy + Delta-G solvation = -3927.882017 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.60185 -38.98428 -37.79406 -37.04005 -36.38998 -33.98566 -32.61379 -31.54010 -30.28661 -29.93692 -28.63091 -27.42283 -25.19070 -24.16504 -22.37214 -22.13083 -21.73757 -20.12572 -19.34005 -18.38020 -17.19679 -16.74550 -16.58474 -15.97830 -15.46705 -15.40345 -15.10646 -14.71415 -14.27454 -13.96523 -13.70941 -13.59536 -13.42622 -13.23446 -12.85463 -12.55499 -12.29887 -12.24058 -12.02626 -11.97482 -11.81585 -11.46337 -11.10681 -11.04624 -10.94956 -10.67890 -10.65842 -10.40398 -10.18062 -9.94908 -9.86739 -9.46409 -9.36397 -9.01808 -8.46259 -8.42845 -8.34813 -6.58258 -5.67990 -3.11095 0.75981 1.05384 1.85735 3.02854 3.17941 3.26535 3.47744 3.54208 3.55886 3.62103 4.49830 4.60106 4.72089 4.87019 4.90265 5.05344 5.07358 5.10210 5.36955 5.43955 5.48497 5.51768 5.62008 5.70863 5.77238 5.86177 5.89076 6.02164 6.16282 6.22738 6.24579 6.41075 6.48875 6.58617 6.77873 6.84637 7.02299 7.04269 7.16902 7.39975 7.82995 7.91333 8.01435 8.55694 8.71237 9.30561 9.94789 10.49696 11.39652 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.011700 B = 0.004263 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.530523 B = 6566.046602 C = 7839.219769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.292 6.292 3 C 0.177 3.823 4 C -0.211 4.211 5 C -0.056 4.056 6 C -0.155 4.155 7 C 0.030 3.970 8 Cl -0.048 7.048 9 C -0.149 4.149 10 C 0.571 3.429 11 O -0.516 6.516 12 N -0.707 5.707 13 C 0.118 3.882 14 H 0.082 0.918 15 C -0.115 4.115 16 C -0.131 4.131 17 C 0.143 3.857 18 N -0.589 5.589 19 C -0.257 4.257 20 H 0.066 0.934 21 C 0.008 3.992 22 N -0.896 5.896 23 Si 0.900 3.100 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.279 1.279 27 C 0.168 3.832 28 H 0.057 0.943 29 H 0.108 0.892 30 H 0.057 0.943 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.392 0.608 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.017 0.983 41 H 0.252 0.748 42 H 0.096 0.904 43 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.492 19.142 -5.279 20.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.204 6.204 3 C 0.129 3.871 4 C -0.230 4.230 5 C -0.074 4.074 6 C -0.174 4.174 7 C 0.003 3.997 8 Cl -0.019 7.019 9 C -0.154 4.154 10 C 0.355 3.645 11 O -0.390 6.390 12 N -0.357 5.357 13 C 0.013 3.987 14 H 0.100 0.900 15 C -0.154 4.154 16 C -0.171 4.171 17 C 0.016 3.984 18 N -0.312 5.312 19 C -0.386 4.386 20 H 0.084 0.916 21 C -0.191 4.191 22 N -0.540 5.540 23 Si 0.730 3.270 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.204 1.204 27 C 0.041 3.959 28 H 0.076 0.924 29 H 0.127 0.873 30 H 0.075 0.925 31 H 0.157 0.843 32 H 0.155 0.845 33 H 0.156 0.844 34 H 0.225 0.775 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.035 0.965 41 H 0.062 0.938 42 H 0.114 0.886 43 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -3.165 18.490 -4.425 19.274 hybrid contribution -0.396 -0.014 0.424 0.580 sum -3.561 18.476 -4.001 19.237 Atomic orbital electron populations 1.23191 0.77515 1.05044 1.01042 1.86266 1.21950 1.25251 1.86901 1.18833 0.90218 0.85375 0.92704 1.21302 1.00642 0.91851 1.09156 1.20957 0.93641 0.97390 0.95414 1.20854 0.93633 0.97188 1.05748 1.20614 0.85528 0.92827 1.00778 1.98406 1.08664 1.98348 1.96470 1.19184 0.91450 0.93843 1.10919 1.17588 0.79450 0.82797 0.84710 1.90853 1.54481 1.62632 1.31082 1.45981 1.54590 1.27734 1.07365 1.21986 0.94145 0.84712 0.97825 0.90009 1.21671 0.98452 0.97998 0.97247 1.22003 0.98339 0.96141 1.00572 1.20949 0.92318 0.94829 0.90267 1.43981 1.49691 1.16891 1.20595 1.19152 0.96929 1.11146 1.11414 0.91634 1.25008 0.94750 0.99320 1.00070 1.70025 0.98393 1.48276 1.37325 0.86328 0.76746 0.79483 0.84454 1.21263 1.21836 1.20443 1.21087 0.90438 0.81660 1.02686 0.92425 0.87332 0.92454 0.84319 0.84528 0.84368 0.77542 0.92292 0.93070 0.92126 0.92676 0.92685 0.96466 0.93768 0.88580 0.96522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.29 -4.69 9.94 -18.68 -0.19 -4.87 16 3 C 0.18 2.55 6.70 -38.70 -0.26 2.29 16 4 C -0.21 -2.18 9.03 -39.47 -0.36 -2.53 16 5 C -0.06 -0.49 10.03 -39.54 -0.40 -0.88 16 6 C -0.16 -1.57 9.81 -39.59 -0.39 -1.96 16 7 C 0.03 0.41 6.35 -39.08 -0.25 0.16 16 8 Cl -0.05 -0.65 28.04 -51.86 -1.45 -2.11 16 9 C -0.15 -2.40 5.64 -104.82 -0.59 -2.99 16 10 C 0.57 11.34 5.81 -12.50 -0.07 11.27 16 11 O -0.52 -12.74 16.77 5.28 0.09 -12.65 16 12 N -0.71 -12.89 5.08 -54.76 -0.28 -13.17 16 13 C 0.12 2.45 2.60 -67.81 -0.18 2.28 16 14 H 0.08 1.93 7.58 -51.93 -0.39 1.53 16 15 C -0.12 -1.97 5.35 -26.69 -0.14 -2.11 16 16 C -0.13 -2.30 6.08 -26.61 -0.16 -2.47 16 17 C 0.14 3.05 6.52 -3.71 -0.02 3.03 16 18 N -0.59 -15.42 3.00 -172.31 -0.52 -15.93 16 19 C -0.26 -7.40 9.58 -15.06 -0.14 -7.54 16 20 H 0.07 1.84 7.89 -52.49 -0.41 1.43 16 21 C 0.01 0.23 4.91 -17.43 -0.09 0.14 16 22 N -0.90 -27.20 11.19 55.49 0.62 -26.58 16 23 Si 0.90 23.02 29.59 -169.99 -5.03 17.99 16 24 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 25 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 26 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 27 C 0.17 4.27 4.89 -3.71 -0.02 4.25 16 28 H 0.06 0.46 7.66 -51.93 -0.40 0.07 16 29 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 31 H 0.14 1.04 6.30 -52.49 -0.33 0.71 16 32 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 33 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.39 5.92 8.59 -40.82 -0.35 5.57 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.05 1.15 7.93 -51.93 -0.41 0.73 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.25 7.42 8.31 -40.82 -0.34 7.09 16 42 H 0.10 2.88 6.03 -51.93 -0.31 2.57 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 369.09 15.07 5.56 5.56 Total: -1.00 -35.54 369.09 -9.22 -44.76 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -5.95 Total: 2.79 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: -2.07 Total: 4.21 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: -0.17 Total: -55.68 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.10 Total: -17.52 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.03 Total: 17.99 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.45 Total: -2.11 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.54 -9.22 -44.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009627748.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.371 kcal (2) G-P(sol) polarization free energy of solvation -35.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds