Wall clock time and date at job start Tue Mar 31 2020 20:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21278 * 119.99675 * 2 1 4 4 N 1.34778 * 120.00486 * 179.97438 * 2 1 3 5 5 C 1.38896 * 120.00081 * 180.02562 * 4 2 1 6 6 N 1.29516 * 125.26958 * 180.28155 * 5 4 2 7 7 C 1.33638 * 115.66929 * 180.21826 * 6 5 4 8 8 C 1.47203 * 122.50123 * 179.76146 * 7 6 5 9 9 O 1.21645 * 119.99587 * 179.70910 * 8 7 6 10 10 N 1.34772 * 119.99886 * 359.70550 * 8 7 6 11 11 C 1.46504 * 119.99676 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.46991 * 184.66328 * 11 10 8 13 13 H 1.08997 * 110.00037 * 54.40463 * 12 11 10 14 14 C 1.54328 * 109.88253 * 293.30821 * 12 11 10 15 15 C 1.55271 * 103.00829 * 218.46742 * 14 12 11 16 16 C 1.54911 * 101.52965 * 35.36431 * 15 14 12 17 17 N 1.47023 * 109.88399 * 175.50576 * 12 11 10 18 18 C 1.36945 * 125.64364 * 298.33764 * 17 12 11 19 19 H 1.07999 * 119.99844 * 346.28822 * 18 17 12 20 20 C 1.38811 * 119.99530 * 166.29381 * 18 17 12 21 21 N 1.31613 * 120.00483 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99613 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47237 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47267 * 119.99835 * 22 20 18 25 25 H 1.48494 * 109.47391 * 240.00014 * 22 20 18 26 26 C 1.34894 * 114.99413 * 359.48640 * 7 6 5 27 27 S 1.70976 * 109.19694 * 0.27296 * 26 7 6 28 28 H 1.09004 * 109.47103 * 239.99655 * 1 2 3 29 29 H 1.08998 * 109.47726 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.46586 * 120.00663 * 1 2 3 31 31 H 0.97005 * 119.99787 * 0.02562 * 4 2 1 32 32 H 0.96996 * 120.00164 * 0.02562 * 10 8 7 33 33 H 1.09000 * 109.47103 * 64.66430 * 11 10 8 34 34 H 1.08998 * 109.47218 * 304.66198 * 11 10 8 35 35 H 1.08999 * 110.71908 * 336.76021 * 14 12 11 36 36 H 1.09000 * 110.71633 * 100.02768 * 14 12 11 37 37 H 1.09002 * 110.96391 * 277.33660 * 15 14 12 38 38 H 1.09005 * 111.09857 * 153.45022 * 15 14 12 39 39 H 1.08998 * 110.36709 * 204.23305 * 16 15 14 40 40 H 1.09001 * 110.36536 * 82.01625 * 16 15 14 41 41 H 0.97000 * 120.00236 * 180.02562 * 21 20 18 42 42 H 1.08002 * 125.39964 * 180.27310 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5699 -1.1671 0.0011 6 7 4.3178 -2.2244 -0.0036 7 6 5.6355 -2.0015 0.0025 8 6 6.6225 -3.0936 0.0036 9 8 7.8118 -2.8384 0.0040 10 7 6.2083 -4.3761 0.0043 11 6 7.1906 -5.4630 0.0060 12 6 6.4660 -6.8055 -0.1108 13 1 5.8166 -6.8036 -0.9862 14 6 5.6314 -7.0638 1.1614 15 6 5.8142 -8.5879 1.3957 16 6 7.2780 -8.7987 0.9347 17 7 7.4468 -7.8955 -0.2181 18 6 8.3650 -8.0468 -1.2229 19 1 8.2717 -7.4697 -2.1310 20 6 9.4153 -8.9420 -1.0740 21 7 9.5292 -9.6450 0.0328 22 14 10.6673 -9.1490 -2.4449 23 1 10.3172 -8.2513 -3.5748 24 1 12.0191 -8.8024 -1.9372 25 1 10.6607 -10.5583 -2.9127 26 6 5.9935 -0.7009 0.0018 27 16 4.5859 0.2697 0.0006 28 1 -0.3633 -0.5139 0.8900 29 1 -0.3634 1.0276 -0.0005 30 1 -0.3632 -0.5140 -0.8900 31 1 1.6960 -2.0073 0.0005 32 1 5.2599 -4.5795 0.0037 33 1 7.7598 -5.4370 0.9352 34 1 7.8685 -5.3414 -0.8388 35 1 6.0264 -6.4957 2.0036 36 1 4.5824 -6.8224 0.9900 37 1 5.1236 -9.1629 0.7788 38 1 5.6964 -8.8397 2.4497 39 1 7.4349 -9.8339 0.6317 40 1 7.9696 -8.5286 1.7327 41 1 10.2634 -10.2703 0.1369 42 1 7.0083 -0.3314 0.0019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027989948.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:49 Heat of formation + Delta-G solvation = -25.560617 kcal Electronic energy + Delta-G solvation = -26215.711748 eV Core-core repulsion = 22322.332009 eV Total energy + Delta-G solvation = -3893.379739 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.71295 -41.10512 -39.82743 -39.08744 -36.04737 -35.83489 -34.41427 -31.89866 -31.45211 -30.52714 -30.11661 -27.22024 -26.49276 -25.14414 -23.43533 -22.53784 -22.02319 -21.29140 -20.83379 -19.72146 -18.75519 -18.26751 -17.85807 -17.72048 -17.15337 -17.06757 -16.51799 -16.43853 -16.02450 -15.71475 -15.27536 -15.23551 -14.89654 -14.52087 -14.32081 -13.98532 -13.66539 -13.44860 -13.40755 -13.12277 -13.09180 -13.04354 -12.87391 -12.71144 -12.20599 -11.99629 -11.90188 -11.71380 -11.49085 -11.42760 -11.39788 -11.20178 -11.08108 -10.70498 -10.51267 -10.18729 -9.41845 -8.87799 -7.89449 -5.27005 -0.55384 -0.09111 0.59351 0.63489 1.42714 1.44990 1.48889 1.49052 1.54420 2.16369 2.26823 2.49001 3.21215 3.29860 3.70510 3.74469 3.91823 3.97735 4.09566 4.17314 4.25443 4.41496 4.49656 4.54287 4.56673 4.69331 4.71286 4.91374 4.95285 4.98615 5.13288 5.16785 5.19514 5.30579 5.46167 5.53260 5.66368 5.76001 5.78115 6.22062 6.32630 6.59580 6.73584 7.08039 7.11225 7.74761 8.40330 9.21264 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018886 B = 0.002398 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.224745 B =11671.419207 C =12560.665792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.510 3.490 3 O -0.549 6.549 4 N -0.610 5.610 5 C 0.247 3.753 6 N -0.485 5.485 7 C 0.014 3.986 8 C 0.582 3.418 9 O -0.579 6.579 10 N -0.689 5.689 11 C 0.127 3.873 12 C 0.149 3.851 13 H 0.049 0.951 14 C -0.113 4.113 15 C -0.131 4.131 16 C 0.172 3.828 17 N -0.610 5.610 18 C -0.239 4.239 19 H 0.075 0.925 20 C -0.060 4.060 21 N -0.945 5.945 22 Si 0.972 3.028 23 H -0.269 1.269 24 H -0.294 1.294 25 H -0.287 1.287 26 C -0.267 4.267 27 S 0.305 5.695 28 H 0.123 0.877 29 H 0.104 0.896 30 H 0.122 0.878 31 H 0.442 0.558 32 H 0.418 0.582 33 H 0.041 0.959 34 H 0.038 0.962 35 H 0.065 0.935 36 H 0.103 0.897 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.039 0.961 40 H -0.008 1.008 41 H 0.248 0.752 42 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.166 19.710 2.106 32.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.300 3.700 3 O -0.425 6.425 4 N -0.263 5.263 5 C -0.123 4.123 6 N -0.208 5.208 7 C -0.120 4.120 8 C 0.366 3.634 9 O -0.460 6.460 10 N -0.340 5.340 11 C 0.001 3.999 12 C 0.042 3.958 13 H 0.067 0.933 14 C -0.151 4.151 15 C -0.170 4.170 16 C 0.047 3.953 17 N -0.334 5.334 18 C -0.368 4.368 19 H 0.093 0.907 20 C -0.253 4.253 21 N -0.593 5.593 22 Si 0.800 3.200 23 H -0.193 1.193 24 H -0.222 1.222 25 H -0.213 1.213 26 C -0.411 4.411 27 S 0.558 5.442 28 H 0.141 0.859 29 H 0.123 0.877 30 H 0.141 0.859 31 H 0.285 0.715 32 H 0.256 0.744 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.084 0.916 36 H 0.121 0.879 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.058 0.942 40 H 0.010 0.990 41 H 0.057 0.943 42 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -24.281 21.010 2.045 32.174 hybrid contribution 1.796 -1.727 -0.605 2.564 sum -22.485 19.284 1.440 29.656 Atomic orbital electron populations 1.21988 0.84344 1.07608 1.07614 1.22367 0.93394 0.81051 0.73179 1.90675 1.70594 1.32021 1.49256 1.43065 0.99779 1.12871 1.70563 1.24587 0.91414 0.93406 1.02916 1.66965 1.02421 1.30131 1.21318 1.19559 0.89021 0.93130 1.10310 1.17591 0.86820 0.82802 0.76139 1.90801 1.18001 1.84444 1.52739 1.45694 1.11391 1.04371 1.72566 1.21808 0.91491 0.86766 0.99843 1.21312 0.90773 0.85822 0.97923 0.93325 1.22622 1.00299 0.96382 0.95800 1.22889 0.96556 0.96167 1.01378 1.21301 0.92239 0.94129 0.87599 1.44760 1.38970 1.24434 1.25285 1.19326 1.02401 1.20297 0.94801 0.90732 1.25664 0.99892 1.00144 0.99632 1.70140 1.32799 1.29162 1.27166 0.85113 0.78718 0.77407 0.78746 1.19336 1.22159 1.21342 1.27109 1.09084 0.97817 1.07046 1.84824 0.89489 1.04328 1.65597 0.85868 0.87701 0.85949 0.71531 0.74425 0.94072 0.94354 0.91645 0.87855 0.91026 0.89727 0.94244 0.98994 0.94258 0.79299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.19 10.32 71.23 0.74 0.93 16 2 C 0.51 4.63 7.90 87.66 0.69 5.32 16 3 O -0.55 -9.45 14.59 -3.02 -0.04 -9.50 16 4 N -0.61 -6.07 5.40 -309.99 -1.67 -7.74 16 5 C 0.25 4.61 8.36 179.27 1.50 6.11 16 6 N -0.48 -11.35 10.11 -187.16 -1.89 -13.25 16 7 C 0.01 0.41 6.66 40.46 0.27 0.68 16 8 C 0.58 20.90 7.79 86.60 0.67 21.57 16 9 O -0.58 -25.41 16.65 -4.17 -0.07 -25.48 16 10 N -0.69 -23.08 5.40 -466.57 -2.52 -25.60 16 11 C 0.13 5.25 5.09 86.38 0.44 5.69 16 12 C 0.15 5.96 3.22 45.34 0.15 6.10 16 13 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 14 C -0.11 -3.56 6.07 31.82 0.19 -3.36 16 15 C -0.13 -4.58 7.10 32.03 0.23 -4.35 16 16 C 0.17 8.47 5.42 86.86 0.47 8.94 16 17 N -0.61 -31.29 3.13 -668.26 -2.09 -33.38 16 18 C -0.24 -13.63 9.73 84.03 0.82 -12.81 16 19 H 0.07 4.17 7.83 -2.91 -0.02 4.15 16 20 C -0.06 -3.47 5.47 84.86 0.46 -3.00 16 21 N -0.94 -57.61 10.54 21.65 0.23 -57.38 16 22 Si 0.97 47.28 29.55 68.60 2.03 49.31 16 23 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 24 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 25 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 26 C -0.27 -6.62 10.55 67.05 0.71 -5.91 16 27 S 0.31 5.89 20.29 -56.49 -1.15 4.75 16 28 H 0.12 -0.66 8.14 -2.39 -0.02 -0.68 16 29 H 0.10 -0.05 8.12 -2.39 -0.02 -0.07 16 30 H 0.12 -0.64 8.14 -2.39 -0.02 -0.66 16 31 H 0.44 1.59 8.82 -92.70 -0.82 0.77 16 32 H 0.42 11.50 7.72 -92.71 -0.72 10.79 16 33 H 0.04 1.87 8.03 -2.39 -0.02 1.85 16 34 H 0.04 1.83 7.86 -2.39 -0.02 1.81 16 35 H 0.06 2.06 7.78 -2.39 -0.02 2.04 16 36 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 39 H 0.04 2.18 6.86 -2.39 -0.02 2.16 16 40 H -0.01 -0.44 8.08 -2.39 -0.02 -0.46 16 41 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 42 H 0.19 4.55 7.99 -2.91 -0.02 4.53 16 Total: -1.00 -81.35 366.93 -0.30 -81.65 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -0.46 Total: 10.71 kcal Atomic # 6 Polarization: 18.56 SS G_CDS: 7.34 Total: 25.90 kcal Atomic # 7 Polarization: -129.39 SS G_CDS: -7.95 Total: -137.34 kcal Atomic # 8 Polarization: -34.86 SS G_CDS: -0.11 Total: -34.98 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.31 kcal Atomic # 16 Polarization: 5.89 SS G_CDS: -1.15 Total: 4.75 kcal Total: -81.35 -0.30 -81.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027989948.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.094 kcal (2) G-P(sol) polarization free energy of solvation -81.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds