Wall clock time and date at job start Tue Mar 31 2020 20:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21278 * 119.99996 * 2 1 4 4 N 1.34771 * 119.99965 * 180.02562 * 2 1 3 5 5 C 1.38897 * 120.00217 * 179.97438 * 4 2 1 6 6 N 1.29511 * 125.27278 * 179.97438 * 5 4 2 7 7 C 1.33638 * 115.67357 * 180.02562 * 6 5 4 8 8 C 1.47190 * 122.50753 * 179.97438 * 7 6 5 9 9 O 1.21642 * 120.00280 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99950 * 0.03473 * 8 7 6 11 11 C 1.46503 * 120.00011 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.46708 * 185.08684 * 11 10 8 13 13 H 1.09004 * 109.87593 * 303.54812 * 12 11 10 14 14 C 1.54324 * 109.88817 * 64.57111 * 12 11 10 15 15 C 1.55159 * 102.94521 * 141.60553 * 14 12 11 16 16 C 1.54912 * 101.58141 * 324.50131 * 15 14 12 17 17 N 1.47031 * 109.87946 * 182.37892 * 12 11 10 18 18 C 1.36934 * 125.64805 * 61.60594 * 17 12 11 19 19 H 1.08000 * 120.00270 * 13.60042 * 18 17 12 20 20 C 1.38808 * 119.99628 * 193.60384 * 18 17 12 21 21 N 1.31611 * 120.00376 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99581 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47253 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47040 * 120.00123 * 22 20 18 25 25 H 1.48502 * 109.47106 * 239.99453 * 22 20 18 26 26 C 1.34898 * 114.99384 * 0.25406 * 7 6 5 27 27 S 1.70989 * 109.19583 * 359.62376 * 26 7 6 28 28 H 1.09011 * 109.47044 * 239.99958 * 1 2 3 29 29 H 1.09006 * 109.47280 * 359.97438 * 1 2 3 30 30 H 1.08992 * 109.47640 * 119.99826 * 1 2 3 31 31 H 0.97004 * 120.00448 * 0.02562 * 4 2 1 32 32 H 0.96998 * 119.99798 * 359.97438 * 10 8 7 33 33 H 1.08996 * 109.47231 * 65.08215 * 11 10 8 34 34 H 1.08997 * 109.46653 * 305.08193 * 11 10 8 35 35 H 1.08995 * 110.72073 * 259.97321 * 14 12 11 36 36 H 1.09002 * 110.71713 * 23.24396 * 14 12 11 37 37 H 1.09008 * 110.99633 * 82.57346 * 15 14 12 38 38 H 1.08991 * 111.00234 * 206.42287 * 15 14 12 39 39 H 1.08999 * 110.36407 * 278.16979 * 16 15 14 40 40 H 1.09004 * 110.36349 * 155.84496 * 16 15 14 41 41 H 0.97002 * 120.00528 * 179.97438 * 21 20 18 42 42 H 1.08000 * 125.40782 * 179.71791 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5698 -1.1672 -0.0011 6 7 4.3176 -2.2246 -0.0011 7 6 5.6353 -2.0018 -0.0011 8 6 6.6222 -3.0938 -0.0006 9 8 7.8116 -2.8388 -0.0002 10 7 6.2080 -4.3764 -0.0008 11 6 7.1903 -5.4634 0.0002 12 6 6.4662 -6.8050 -0.1282 13 1 5.7362 -6.9105 0.6744 14 6 5.7579 -6.8905 -1.4966 15 6 5.9706 -8.3718 -1.9062 16 6 7.3864 -8.6502 -1.3423 17 7 7.4393 -7.9058 -0.0709 18 6 8.2595 -8.1917 0.9877 19 1 8.0786 -7.7352 1.9497 20 6 9.3234 -9.0682 0.8244 21 7 9.5436 -9.6248 -0.3477 22 14 10.4427 -9.4576 2.2684 23 1 9.9841 -8.7091 3.4662 24 1 10.3990 -10.9152 2.5495 25 1 11.8344 -9.0589 1.9376 26 6 5.9935 -0.7013 0.0043 27 16 4.5859 0.2695 -0.0009 28 1 -0.3634 -0.5139 0.8901 29 1 -0.3634 1.0277 0.0005 30 1 -0.3634 -0.5138 -0.8899 31 1 1.6959 -2.0073 -0.0013 32 1 5.2596 -4.5798 -0.0009 33 1 7.7542 -5.4425 0.9327 34 1 7.8728 -5.3370 -0.8401 35 1 4.6959 -6.6669 -1.3957 36 1 6.2275 -6.2201 -2.2164 37 1 5.2288 -9.0175 -1.4360 38 1 5.9528 -8.4838 -2.9902 39 1 8.1477 -8.2815 -2.0298 40 1 7.5203 -9.7170 -1.1632 41 1 10.2873 -10.2370 -0.4620 42 1 7.0083 -0.3317 0.0095 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027989949.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:53 Heat of formation + Delta-G solvation = 0.977642 kcal Electronic energy + Delta-G solvation = -26222.917037 eV Core-core repulsion = 22330.688084 eV Total energy + Delta-G solvation = -3892.228953 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.90951 -40.12953 -38.55045 -37.49352 -35.37275 -34.22284 -32.45520 -31.29317 -29.75238 -29.50010 -28.73812 -25.89352 -24.68562 -23.77286 -22.38275 -21.81572 -20.29632 -19.87864 -19.40400 -18.75665 -17.50261 -17.24263 -16.82387 -16.44149 -16.34957 -15.55444 -15.25686 -14.86130 -14.65808 -14.40062 -14.21702 -13.82971 -13.62021 -13.34036 -13.17796 -13.07443 -12.83957 -12.22165 -12.05136 -11.87004 -11.73566 -11.42650 -11.26836 -10.92916 -10.79061 -10.67329 -10.24209 -10.21126 -10.09152 -9.97349 -9.83148 -9.75060 -9.65332 -9.64541 -8.72873 -8.59043 -8.45499 -6.83067 -5.74814 -3.11265 0.35598 0.72712 1.51211 1.52177 2.10763 2.20512 3.40438 3.47118 3.49179 3.52355 3.55190 3.97766 4.23992 4.50911 4.58772 4.68266 5.05845 5.16519 5.20599 5.35064 5.37982 5.44049 5.54748 5.65191 5.75645 5.84126 6.09376 6.15742 6.28384 6.31393 6.48418 6.56874 6.65279 6.73249 6.84183 7.07988 7.19961 7.23784 7.54451 7.62542 7.81257 7.87173 8.27089 8.47823 9.19252 9.79739 10.46856 11.36948 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.019140 B = 0.002380 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.581313 B =11763.351274 C =12530.210192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.511 3.489 3 O -0.510 6.510 4 N -0.622 5.622 5 C 0.246 3.754 6 N -0.474 5.474 7 C 0.035 3.965 8 C 0.584 3.416 9 O -0.537 6.537 10 N -0.703 5.703 11 C 0.107 3.893 12 C 0.153 3.847 13 H 0.038 0.962 14 C -0.125 4.125 15 C -0.148 4.148 16 C 0.171 3.829 17 N -0.589 5.589 18 C -0.232 4.232 19 H 0.077 0.923 20 C -0.003 4.003 21 N -0.916 5.916 22 Si 0.911 3.089 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.289 1.289 26 C -0.262 4.262 27 S 0.267 5.733 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.427 0.573 32 H 0.404 0.596 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.025 0.975 40 H 0.074 0.926 41 H 0.253 0.747 42 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.165 18.654 -1.629 28.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.299 3.701 3 O -0.385 6.385 4 N -0.273 5.273 5 C -0.124 4.124 6 N -0.198 5.198 7 C -0.100 4.100 8 C 0.366 3.634 9 O -0.414 6.414 10 N -0.353 5.353 11 C -0.018 4.018 12 C 0.044 3.956 13 H 0.056 0.944 14 C -0.164 4.164 15 C -0.187 4.187 16 C 0.047 3.953 17 N -0.313 5.313 18 C -0.360 4.360 19 H 0.095 0.905 20 C -0.200 4.200 21 N -0.562 5.562 22 Si 0.741 3.259 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.216 1.216 26 C -0.404 4.404 27 S 0.518 5.482 28 H 0.117 0.883 29 H 0.122 0.878 30 H 0.117 0.883 31 H 0.266 0.734 32 H 0.239 0.761 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.043 0.957 40 H 0.093 0.907 41 H 0.063 0.937 42 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -20.186 19.940 -1.583 28.418 hybrid contribution 0.681 -1.548 0.709 1.834 sum -19.505 18.392 -0.874 26.823 Atomic orbital electron populations 1.21895 0.88511 1.06778 1.05394 1.21354 0.91717 0.82095 0.74952 1.90697 1.69647 1.30678 1.47452 1.42861 1.01557 1.11582 1.71261 1.24305 0.89755 0.93808 1.04493 1.67026 1.03365 1.29407 1.19968 1.20006 0.88530 0.93894 1.07553 1.17137 0.86689 0.82153 0.77423 1.90830 1.15920 1.83768 1.50866 1.45970 1.11372 1.05196 1.72736 1.22311 0.91387 0.85403 1.02655 1.21118 0.91992 0.87252 0.95239 0.94437 1.22598 0.98881 0.97785 0.97090 1.23009 1.00961 0.95356 0.99381 1.21479 0.89671 0.98105 0.86065 1.44503 1.43724 1.27874 1.15213 1.19045 1.04796 1.23556 0.88626 0.90548 1.24900 0.97820 1.00332 0.96919 1.69944 1.31239 1.33363 1.21679 0.86068 0.80747 0.77641 0.81456 1.20376 1.21738 1.21607 1.26922 1.07718 0.97718 1.08080 1.84839 0.91241 1.05430 1.66647 0.88301 0.87782 0.88295 0.73388 0.76140 0.91340 0.91379 0.92371 0.91864 0.92316 0.92375 0.95687 0.90732 0.93670 0.79276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.24 10.32 36.00 0.37 0.13 16 2 C 0.51 3.11 7.90 -10.99 -0.09 3.02 16 3 O -0.51 -4.96 14.59 5.56 0.08 -4.88 16 4 N -0.62 -4.06 5.40 -11.91 -0.06 -4.13 16 5 C 0.25 2.56 8.36 -87.54 -0.73 1.83 16 6 N -0.47 -5.96 10.11 -10.51 -0.11 -6.06 16 7 C 0.03 0.50 6.66 -84.63 -0.56 -0.06 16 8 C 0.58 10.31 7.79 -12.62 -0.10 10.21 16 9 O -0.54 -11.28 16.65 5.24 0.09 -11.19 16 10 N -0.70 -11.84 5.32 -61.46 -0.33 -12.16 16 11 C 0.11 2.17 5.07 -4.04 -0.02 2.15 16 12 C 0.15 3.09 3.22 -66.95 -0.22 2.88 16 13 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 14 C -0.13 -2.16 6.10 -24.90 -0.15 -2.32 16 15 C -0.15 -2.76 7.09 -24.58 -0.17 -2.93 16 16 C 0.17 4.13 5.43 -2.53 -0.01 4.12 16 17 N -0.59 -14.80 3.13 -162.57 -0.51 -15.30 16 18 C -0.23 -6.41 9.76 -15.06 -0.15 -6.56 16 19 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 20 C 0.00 -0.08 5.47 -17.44 -0.10 -0.17 16 21 N -0.92 -26.86 10.53 55.49 0.58 -26.27 16 22 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 C -0.26 -3.28 10.55 29.55 0.31 -2.97 16 27 S 0.27 2.77 20.29 -107.50 -2.18 0.59 16 28 H 0.10 -0.02 8.14 -51.92 -0.42 -0.45 16 29 H 0.10 0.16 8.12 -51.93 -0.42 -0.26 16 30 H 0.10 -0.03 8.14 -51.93 -0.42 -0.45 16 31 H 0.43 1.57 8.82 -40.82 -0.36 1.21 16 32 H 0.40 5.92 7.81 -40.82 -0.32 5.60 16 33 H 0.07 1.54 7.92 -51.93 -0.41 1.13 16 34 H 0.07 1.52 8.08 -51.93 -0.42 1.10 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.06 1.09 7.81 -51.93 -0.41 0.69 16 37 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.03 0.66 8.08 -51.93 -0.42 0.24 16 40 H 0.07 1.99 6.85 -51.93 -0.36 1.64 16 41 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.19 2.23 7.99 -52.49 -0.42 1.81 16 LS Contribution 367.09 15.07 5.53 5.53 Total: -1.00 -35.18 367.09 -9.16 -44.34 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -5.61 Total: 2.92 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: -1.62 Total: 9.32 kcal Atomic # 7 Polarization: -63.51 SS G_CDS: -0.42 Total: -63.93 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: 0.17 Total: -16.07 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Atomic # 16 Polarization: 2.77 SS G_CDS: -2.18 Total: 0.59 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.18 -9.16 -44.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027989949.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.314 kcal (2) G-P(sol) polarization free energy of solvation -35.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds