Wall clock time and date at job start Tue Mar 31 2020 21:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35655 * 116.99648 * 2 1 4 4 C 1.38641 * 120.14708 * 0.20320 * 3 2 1 5 5 C 1.38203 * 120.07608 * 180.27863 * 4 3 2 6 6 Cl 1.73601 * 119.82195 * 179.77137 * 5 4 3 7 7 C 1.38701 * 120.36058 * 359.74605 * 5 4 3 8 8 C 1.37726 * 120.28364 * 0.02562 * 7 5 4 9 9 C 1.39745 * 119.92470 * 359.97353 * 8 7 5 10 10 C 1.47480 * 120.17839 * 179.97438 * 9 8 7 11 11 O 1.21596 * 119.99480 * 179.97438 * 10 9 8 12 12 N 1.34772 * 119.99875 * 359.97438 * 10 9 8 13 13 C 1.46504 * 119.99676 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.46991 * 184.66328 * 13 12 10 15 15 H 1.08997 * 110.00037 * 54.40463 * 14 13 12 16 16 C 1.54328 * 109.88253 * 293.30821 * 14 13 12 17 17 C 1.55271 * 103.00829 * 218.46742 * 16 14 13 18 18 C 1.54911 * 101.52965 * 35.36431 * 17 16 14 19 19 N 1.47023 * 109.88399 * 175.50576 * 14 13 12 20 20 C 1.36945 * 125.64364 * 298.33764 * 19 14 13 21 21 H 1.07999 * 119.99844 * 346.28822 * 20 19 14 22 22 C 1.38813 * 119.99936 * 166.29408 * 20 19 14 23 23 N 1.31621 * 119.99796 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 120.00121 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47462 * 89.99550 * 24 22 20 26 26 H 1.48497 * 109.47458 * 210.00077 * 24 22 20 27 27 H 1.48507 * 109.47096 * 330.00174 * 24 22 20 28 28 H 1.08997 * 109.47313 * 60.00405 * 1 2 3 29 29 H 1.09000 * 109.47150 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47462 * 300.00250 * 1 2 3 31 31 H 1.08007 * 119.96350 * 0.05512 * 4 3 2 32 32 H 1.07998 * 119.85720 * 179.97438 * 7 5 4 33 33 H 1.08008 * 120.03478 * 179.97438 * 8 7 5 34 34 H 0.97005 * 120.00401 * 0.02562 * 12 10 9 35 35 H 1.09000 * 109.47103 * 64.66430 * 13 12 10 36 36 H 1.08998 * 109.47218 * 304.66198 * 13 12 10 37 37 H 1.08998 * 110.71926 * 336.75461 * 16 14 13 38 38 H 1.09000 * 110.71633 * 100.02768 * 16 14 13 39 39 H 1.09002 * 110.96391 * 277.33660 * 17 16 14 40 40 H 1.09005 * 111.09857 * 153.45022 * 17 16 14 41 41 H 1.08998 * 110.36709 * 204.23305 * 18 17 16 42 42 H 1.09001 * 110.36536 * 82.01625 * 18 17 16 43 43 H 0.97000 * 119.99954 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2926 2.3734 0.0043 5 6 1.9215 3.6040 -0.0016 6 17 0.9731 5.0581 -0.0022 7 6 3.3062 3.6837 -0.0064 8 6 4.0679 2.5363 -0.0059 9 6 3.4444 1.2856 0.0000 10 6 4.2546 0.0533 -0.0001 11 8 3.7087 -1.0332 0.0055 12 7 5.6001 0.1315 -0.0064 13 6 6.4049 -1.0927 -0.0059 14 6 7.8869 -0.7287 0.1036 15 1 8.0519 -0.0959 0.9756 16 6 8.3420 0.0086 -1.1736 17 6 9.7701 -0.5527 -1.4110 18 6 9.6077 -2.0205 -0.9430 19 7 8.6955 -1.9517 0.2130 20 6 8.6149 -2.8740 1.2221 21 1 8.0834 -2.6346 2.1313 22 6 9.2165 -4.1165 1.0764 23 7 9.8639 -4.4083 -0.0318 24 14 9.1072 -5.3743 2.4530 25 1 7.8975 -6.2140 2.2615 26 1 10.3163 -6.2362 2.4333 27 1 9.0208 -4.6726 3.7590 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 0.2139 2.3188 0.0085 32 1 3.7891 4.6497 -0.0113 33 1 5.1459 2.6030 -0.0101 34 1 6.0356 0.9982 -0.0105 35 1 6.2329 -1.6410 -0.9321 36 1 6.1199 -1.7146 0.8428 37 1 7.6896 -0.2344 -2.0123 38 1 8.3729 1.0853 -1.0069 39 1 10.5027 -0.0264 -0.7992 40 1 10.0393 -0.5067 -2.4663 41 1 10.5712 -2.4315 -0.6420 42 1 9.1692 -2.6254 -1.7367 43 1 10.2840 -5.2766 -0.1338 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028105994.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:16 Heat of formation + Delta-G solvation = -26.207130 kcal Electronic energy + Delta-G solvation = -26656.140331 eV Core-core repulsion = 22728.396100 eV Total energy + Delta-G solvation = -3927.744231 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.79171 -39.00285 -37.94764 -37.52852 -36.61074 -34.22337 -32.49202 -31.59003 -30.59144 -29.60496 -28.62163 -27.50813 -25.08461 -24.33848 -23.31244 -22.45090 -20.58801 -20.07986 -19.61469 -18.70649 -17.43355 -16.83045 -16.60523 -16.08633 -15.74336 -15.43866 -15.14989 -14.80783 -14.66828 -14.29722 -14.00012 -13.85402 -13.65221 -13.28898 -12.95825 -12.78795 -12.27600 -12.16828 -12.05218 -11.87014 -11.73852 -11.66992 -11.39050 -11.32437 -11.14479 -10.93103 -10.78749 -10.20659 -10.10122 -9.91283 -9.84180 -9.71338 -9.55257 -9.32384 -8.72569 -8.59469 -8.47613 -6.83625 -5.75536 -3.12023 0.40654 0.94371 1.62809 2.76010 2.96002 3.37745 3.43038 3.47680 3.48463 3.66306 4.28454 4.48595 4.56160 4.62167 4.74510 4.86602 4.89064 5.11249 5.12520 5.28962 5.34501 5.40450 5.48268 5.60910 5.64479 5.73500 5.80159 5.81516 6.05976 6.13123 6.15124 6.24053 6.46645 6.55778 6.62850 6.72614 6.82740 7.02034 7.08027 7.52888 7.61369 7.80371 7.81483 8.26584 8.53086 9.18581 9.79101 10.45815 11.36242 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.016691 B = 0.002567 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.181093 B =10906.974862 C =12022.845460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.271 6.271 3 C 0.196 3.804 4 C -0.215 4.215 5 C 0.025 3.975 6 Cl -0.064 7.064 7 C -0.158 4.158 8 C -0.035 4.035 9 C -0.160 4.160 10 C 0.551 3.449 11 O -0.517 6.517 12 N -0.720 5.720 13 C 0.111 3.889 14 C 0.152 3.848 15 H 0.038 0.962 16 C -0.128 4.128 17 C -0.148 4.148 18 C 0.171 3.829 19 N -0.589 5.589 20 C -0.233 4.233 21 H 0.076 0.924 22 C -0.002 4.002 23 N -0.916 5.916 24 Si 0.911 3.089 25 H -0.287 1.287 26 H -0.290 1.290 27 H -0.280 1.280 28 H 0.057 0.943 29 H 0.106 0.894 30 H 0.057 0.943 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.145 0.855 34 H 0.392 0.608 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.025 0.975 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.679 19.207 -2.258 24.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.181 6.181 3 C 0.147 3.853 4 C -0.235 4.235 5 C -0.002 4.002 6 Cl -0.035 7.035 7 C -0.177 4.177 8 C -0.054 4.054 9 C -0.164 4.164 10 C 0.337 3.663 11 O -0.393 6.393 12 N -0.373 5.373 13 C -0.014 4.014 14 C 0.043 3.957 15 H 0.056 0.944 16 C -0.166 4.166 17 C -0.187 4.187 18 C 0.047 3.953 19 N -0.313 5.313 20 C -0.361 4.361 21 H 0.094 0.906 22 C -0.199 4.199 23 N -0.562 5.562 24 Si 0.741 3.259 25 H -0.214 1.214 26 H -0.217 1.217 27 H -0.206 1.206 28 H 0.075 0.925 29 H 0.124 0.876 30 H 0.075 0.925 31 H 0.162 0.838 32 H 0.159 0.841 33 H 0.162 0.838 34 H 0.226 0.774 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.043 0.957 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -15.952 18.050 -2.207 24.190 hybrid contribution -0.329 0.015 0.646 0.725 sum -16.282 18.066 -1.561 24.370 Atomic orbital electron populations 1.23230 0.78526 1.04719 1.01226 1.86462 1.20904 1.24574 1.86208 1.18878 0.90892 0.84580 0.90964 1.21055 1.00974 0.90325 1.11098 1.20818 0.91955 0.87223 1.00170 1.98387 1.72419 1.36117 1.96565 1.20870 0.91260 0.99740 1.05809 1.21173 1.00303 0.90035 0.93932 1.19673 0.90954 0.94752 1.11043 1.17873 0.82378 0.88228 0.77871 1.90847 1.71532 1.28488 1.48478 1.46048 1.05530 1.10705 1.74974 1.22250 0.91507 0.85137 1.02528 1.21136 0.88720 0.90427 0.95412 0.94442 1.22652 0.97898 0.98196 0.97839 1.23022 0.95528 1.00377 0.99765 1.21470 0.95655 0.89520 0.88698 1.44489 1.39018 1.22517 1.25278 1.18993 1.31104 0.92209 0.93796 0.90610 1.24898 1.00562 0.97108 0.97334 1.69938 1.38890 1.21962 1.25453 0.86143 0.77180 0.81462 0.81135 1.21383 1.21671 1.20575 0.92454 0.87613 0.92451 0.83813 0.84099 0.83779 0.77351 0.91905 0.91000 0.91759 0.92403 0.92309 0.92321 0.90788 0.95684 0.93618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 101.05 0.99 1.14 16 2 O -0.27 -3.71 8.57 -40.56 -0.35 -4.06 16 3 C 0.20 2.45 6.70 -38.71 -0.26 2.19 16 4 C -0.22 -2.08 8.80 -39.45 -0.35 -2.43 16 5 C 0.03 0.23 6.32 -39.42 -0.25 -0.02 16 6 Cl -0.06 -0.51 28.94 -51.86 -1.50 -2.01 16 7 C -0.16 -1.33 9.80 -39.60 -0.39 -1.72 16 8 C -0.04 -0.34 9.53 -39.21 -0.37 -0.71 16 9 C -0.16 -2.08 5.89 -104.84 -0.62 -2.70 16 10 C 0.55 9.15 7.76 -12.50 -0.10 9.06 16 11 O -0.52 -10.86 15.16 -16.61 -0.25 -11.11 16 12 N -0.72 -10.96 5.35 -61.37 -0.33 -11.28 16 13 C 0.11 2.14 5.09 -4.04 -0.02 2.12 16 14 C 0.15 2.95 3.22 -66.95 -0.22 2.73 16 15 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 16 C -0.13 -2.07 6.07 -24.83 -0.15 -2.22 16 17 C -0.15 -2.66 7.10 -24.52 -0.17 -2.84 16 18 C 0.17 4.05 5.42 -2.53 -0.01 4.04 16 19 N -0.59 -14.53 3.13 -162.57 -0.51 -15.04 16 20 C -0.23 -6.38 9.73 -15.06 -0.15 -6.53 16 21 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 22 C 0.00 -0.05 5.47 -17.43 -0.10 -0.15 16 23 N -0.92 -26.68 10.54 55.49 0.58 -26.09 16 24 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 28 H 0.06 0.38 7.67 -51.93 -0.40 -0.02 16 29 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.38 7.65 -51.93 -0.40 -0.02 16 31 H 0.14 1.09 6.30 -52.48 -0.33 0.76 16 32 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.14 1.00 6.40 -52.48 -0.34 0.66 16 34 H 0.39 4.56 6.27 -40.82 -0.26 4.31 16 35 H 0.06 1.34 8.03 -51.93 -0.42 0.93 16 36 H 0.07 1.61 7.86 -51.93 -0.41 1.20 16 37 H 0.06 1.03 7.78 -51.93 -0.40 0.63 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.07 1.95 6.86 -51.93 -0.36 1.60 16 42 H 0.03 0.65 8.08 -51.93 -0.42 0.23 16 43 H 0.25 7.18 8.31 -40.82 -0.34 6.85 16 LS Contribution 367.10 15.07 5.53 5.53 Total: -1.00 -33.47 367.10 -9.81 -43.28 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -5.81 Total: 1.60 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -2.16 Total: 1.99 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: -0.25 Total: -52.42 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.60 Total: -15.17 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.50 Total: -2.01 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.47 -9.81 -43.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028105994.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.072 kcal (2) G-P(sol) polarization free energy of solvation -33.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds