Wall clock time and date at job start Tue Mar 31 2020 21:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35655 * 116.99648 * 2 1 4 4 C 1.38641 * 120.14708 * 0.20320 * 3 2 1 5 5 C 1.38203 * 120.07608 * 180.27863 * 4 3 2 6 6 Cl 1.73601 * 119.82195 * 179.77137 * 5 4 3 7 7 C 1.38701 * 120.36058 * 359.74605 * 5 4 3 8 8 C 1.37726 * 120.28364 * 0.02562 * 7 5 4 9 9 C 1.39745 * 119.92470 * 359.97353 * 8 7 5 10 10 C 1.47480 * 120.17839 * 179.97438 * 9 8 7 11 11 O 1.21596 * 119.99480 * 179.97438 * 10 9 8 12 12 N 1.34772 * 119.99875 * 359.97438 * 10 9 8 13 13 C 1.46504 * 119.99676 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.46991 * 184.66328 * 13 12 10 15 15 H 1.08997 * 110.00037 * 54.40463 * 14 13 12 16 16 C 1.54328 * 109.88253 * 293.30821 * 14 13 12 17 17 C 1.55271 * 103.00829 * 218.46742 * 16 14 13 18 18 C 1.54911 * 101.52965 * 35.36431 * 17 16 14 19 19 N 1.47023 * 109.88399 * 175.50576 * 14 13 12 20 20 C 1.36945 * 125.64364 * 298.33764 * 19 14 13 21 21 H 1.07999 * 119.99844 * 346.28822 * 20 19 14 22 22 C 1.38813 * 119.99936 * 166.29408 * 20 19 14 23 23 N 1.31621 * 119.99796 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 120.00121 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47462 * 89.99550 * 24 22 20 26 26 H 1.48497 * 109.47458 * 210.00077 * 24 22 20 27 27 H 1.48507 * 109.47096 * 330.00174 * 24 22 20 28 28 H 1.08997 * 109.47313 * 60.00405 * 1 2 3 29 29 H 1.09000 * 109.47150 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47462 * 300.00250 * 1 2 3 31 31 H 1.08007 * 119.96350 * 0.05512 * 4 3 2 32 32 H 1.07998 * 119.85720 * 179.97438 * 7 5 4 33 33 H 1.08008 * 120.03478 * 179.97438 * 8 7 5 34 34 H 0.97005 * 120.00401 * 0.02562 * 12 10 9 35 35 H 1.09000 * 109.47103 * 64.66430 * 13 12 10 36 36 H 1.08998 * 109.47218 * 304.66198 * 13 12 10 37 37 H 1.08998 * 110.71926 * 336.75461 * 16 14 13 38 38 H 1.09000 * 110.71633 * 100.02768 * 16 14 13 39 39 H 1.09002 * 110.96391 * 277.33660 * 17 16 14 40 40 H 1.09005 * 111.09857 * 153.45022 * 17 16 14 41 41 H 1.08998 * 110.36709 * 204.23305 * 18 17 16 42 42 H 1.09001 * 110.36536 * 82.01625 * 18 17 16 43 43 H 0.97000 * 119.99954 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2926 2.3734 0.0043 5 6 1.9215 3.6040 -0.0016 6 17 0.9731 5.0581 -0.0022 7 6 3.3062 3.6837 -0.0064 8 6 4.0679 2.5363 -0.0059 9 6 3.4444 1.2856 0.0000 10 6 4.2546 0.0533 -0.0001 11 8 3.7087 -1.0332 0.0055 12 7 5.6001 0.1315 -0.0064 13 6 6.4049 -1.0927 -0.0059 14 6 7.8869 -0.7287 0.1036 15 1 8.0519 -0.0959 0.9756 16 6 8.3420 0.0086 -1.1736 17 6 9.7701 -0.5527 -1.4110 18 6 9.6077 -2.0205 -0.9430 19 7 8.6955 -1.9517 0.2130 20 6 8.6149 -2.8740 1.2221 21 1 8.0834 -2.6346 2.1313 22 6 9.2165 -4.1165 1.0764 23 7 9.8639 -4.4083 -0.0318 24 14 9.1072 -5.3743 2.4530 25 1 7.8975 -6.2140 2.2615 26 1 10.3163 -6.2362 2.4333 27 1 9.0208 -4.6726 3.7590 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 0.2139 2.3188 0.0085 32 1 3.7891 4.6497 -0.0113 33 1 5.1459 2.6030 -0.0101 34 1 6.0356 0.9982 -0.0105 35 1 6.2329 -1.6410 -0.9321 36 1 6.1199 -1.7146 0.8428 37 1 7.6896 -0.2344 -2.0123 38 1 8.3729 1.0853 -1.0069 39 1 10.5027 -0.0264 -0.7992 40 1 10.0393 -0.5067 -2.4663 41 1 10.5712 -2.4315 -0.6420 42 1 9.1692 -2.6254 -1.7367 43 1 10.2840 -5.2766 -0.1338 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028105994.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:15 Heat of formation + Delta-G solvation = -47.256630 kcal Electronic energy + Delta-G solvation = -26657.053106 eV Core-core repulsion = 22728.396100 eV Total energy + Delta-G solvation = -3928.657006 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.71659 -40.26625 -39.14662 -38.69623 -37.34065 -35.74240 -34.40331 -32.54565 -31.35289 -31.34481 -30.17651 -28.25163 -26.75890 -25.92633 -24.46346 -23.25362 -22.07519 -21.51107 -21.16732 -19.69526 -18.81133 -18.17275 -17.76918 -17.12451 -16.91384 -16.55990 -16.29045 -16.17022 -16.05980 -15.67401 -15.51693 -14.82178 -14.68369 -14.46449 -14.27467 -13.95557 -13.64063 -13.56804 -13.40128 -13.03212 -12.94974 -12.84677 -12.80274 -12.69687 -12.39638 -12.02872 -12.01031 -11.85586 -11.85358 -11.66702 -11.45141 -11.37190 -10.94661 -10.68754 -10.18494 -9.98222 -9.37337 -8.85543 -7.88259 -5.25370 -0.42730 0.21078 0.93881 1.43208 1.46261 1.53466 1.75189 2.10939 2.24840 2.49784 2.65983 3.31093 3.60064 3.62117 3.81004 3.87817 3.96839 3.99822 4.02157 4.22695 4.28599 4.32318 4.33378 4.45101 4.48946 4.57228 4.67967 4.75389 4.83184 4.99798 5.02803 5.04946 5.07201 5.17367 5.24218 5.37344 5.44900 5.48374 5.59004 5.68803 5.80184 6.23881 6.25729 6.61838 7.09769 7.29373 7.77087 8.42136 9.22318 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.016691 B = 0.002567 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.181093 B =10906.974862 C =12022.845460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.312 6.312 3 C 0.179 3.821 4 C -0.212 4.212 5 C 0.027 3.973 6 Cl -0.050 7.050 7 C -0.150 4.150 8 C -0.023 4.023 9 C -0.188 4.188 10 C 0.549 3.451 11 O -0.573 6.573 12 N -0.703 5.703 13 C 0.131 3.869 14 C 0.148 3.852 15 H 0.053 0.947 16 C -0.114 4.114 17 C -0.132 4.132 18 C 0.172 3.828 19 N -0.611 5.611 20 C -0.238 4.238 21 H 0.075 0.925 22 C -0.060 4.060 23 N -0.945 5.945 24 Si 0.970 3.030 25 H -0.292 1.292 26 H -0.290 1.290 27 H -0.268 1.268 28 H 0.075 0.925 29 H 0.109 0.891 30 H 0.074 0.926 31 H 0.162 0.838 32 H 0.172 0.828 33 H 0.173 0.827 34 H 0.414 0.586 35 H 0.034 0.966 36 H 0.032 0.968 37 H 0.066 0.934 38 H 0.110 0.890 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.037 0.963 42 H -0.010 1.010 43 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.367 23.370 -2.115 28.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.223 6.223 3 C 0.130 3.870 4 C -0.231 4.231 5 C 0.000 4.000 6 Cl -0.020 7.020 7 C -0.169 4.169 8 C -0.042 4.042 9 C -0.193 4.193 10 C 0.337 3.663 11 O -0.453 6.453 12 N -0.356 5.356 13 C 0.005 3.995 14 C 0.041 3.959 15 H 0.071 0.929 16 C -0.152 4.152 17 C -0.171 4.171 18 C 0.047 3.953 19 N -0.336 5.336 20 C -0.367 4.367 21 H 0.093 0.907 22 C -0.254 4.254 23 N -0.594 5.594 24 Si 0.799 3.201 25 H -0.219 1.219 26 H -0.217 1.217 27 H -0.192 1.192 28 H 0.093 0.907 29 H 0.127 0.873 30 H 0.092 0.908 31 H 0.180 0.820 32 H 0.189 0.811 33 H 0.190 0.810 34 H 0.252 0.748 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.084 0.916 38 H 0.128 0.872 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.056 0.944 42 H 0.008 0.992 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -16.649 22.300 -2.057 27.905 hybrid contribution -0.241 -1.160 0.604 1.330 sum -16.890 21.140 -1.453 27.098 Atomic orbital electron populations 1.23483 0.76419 1.05632 1.02887 1.86408 1.23398 1.25954 1.86551 1.19129 0.91096 0.85093 0.91687 1.21179 1.01789 0.89658 1.10504 1.21030 0.92640 0.87463 0.98910 1.98401 1.72186 1.35086 1.96374 1.21212 0.90928 1.00581 1.04166 1.21436 1.01731 0.88705 0.92317 1.19520 0.91000 0.94181 1.14560 1.18493 0.82540 0.88961 0.76298 1.90814 1.72528 1.30955 1.51027 1.45699 1.05107 1.10242 1.74601 1.21686 0.92297 0.86176 0.99352 1.21362 0.87656 0.88831 0.98085 0.92889 1.22660 0.96163 1.00620 0.95738 1.22885 0.97166 0.95754 1.01282 1.21296 0.93352 0.93153 0.87521 1.44760 1.40590 1.23425 1.24783 1.19290 1.29836 0.92978 0.94627 0.90705 1.25656 1.01114 0.99035 0.99604 1.70139 1.40154 1.21897 1.27169 0.85206 0.76578 0.79137 0.79225 1.21937 1.21670 1.19225 0.90676 0.87265 0.90764 0.82009 0.81054 0.81005 0.74773 0.94712 0.94959 0.91558 0.87162 0.91001 0.89860 0.94436 0.99225 0.94324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.81 113.37 1.11 1.27 16 2 O -0.31 -8.74 8.57 -68.77 -0.59 -9.33 16 3 C 0.18 4.36 6.70 22.84 0.15 4.51 16 4 C -0.21 -3.66 8.80 22.36 0.20 -3.46 16 5 C 0.03 0.40 6.32 22.37 0.14 0.54 16 6 Cl -0.05 -0.62 28.94 -2.72 -0.08 -0.70 16 7 C -0.15 -1.90 9.80 22.26 0.22 -1.69 16 8 C -0.02 -0.36 9.53 22.51 0.21 -0.15 16 9 C -0.19 -4.69 5.89 -20.01 -0.12 -4.81 16 10 C 0.55 18.42 7.76 86.68 0.67 19.10 16 11 O -0.57 -25.38 15.16 16.91 0.26 -25.13 16 12 N -0.70 -20.76 5.35 -466.33 -2.50 -23.26 16 13 C 0.13 5.20 5.09 86.38 0.44 5.64 16 14 C 0.15 5.61 3.22 45.34 0.15 5.76 16 15 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 16 C -0.11 -3.31 6.07 31.82 0.19 -3.11 16 17 C -0.13 -4.45 7.10 32.03 0.23 -4.22 16 18 C 0.17 8.34 5.42 86.86 0.47 8.81 16 19 N -0.61 -30.80 3.13 -668.26 -2.09 -32.89 16 20 C -0.24 -13.45 9.73 84.03 0.82 -12.63 16 21 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 22 C -0.06 -3.51 5.47 84.86 0.46 -3.04 16 23 N -0.95 -57.60 10.54 21.65 0.23 -57.37 16 24 Si 0.97 47.14 29.55 68.60 2.03 49.17 16 25 H -0.29 -14.31 7.11 99.48 0.71 -13.61 16 26 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 27 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 28 H 0.07 0.90 7.67 -2.39 -0.02 0.89 16 29 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.07 0.91 7.65 -2.38 -0.02 0.89 16 31 H 0.16 2.06 6.30 -2.91 -0.02 2.04 16 32 H 0.17 1.15 8.06 -2.91 -0.02 1.13 16 33 H 0.17 1.55 6.40 -2.91 -0.02 1.53 16 34 H 0.41 8.33 6.27 -92.70 -0.58 7.75 16 35 H 0.03 1.56 8.03 -2.39 -0.02 1.54 16 36 H 0.03 1.52 7.86 -2.39 -0.02 1.50 16 37 H 0.07 1.93 7.78 -2.39 -0.02 1.91 16 38 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 41 H 0.04 2.06 6.86 -2.39 -0.02 2.04 16 42 H -0.01 -0.56 8.08 -2.39 -0.02 -0.58 16 43 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -79.66 367.10 3.07 -76.59 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: 0.46 Total: 10.41 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: 5.35 Total: 12.51 kcal Atomic # 7 Polarization: -109.16 SS G_CDS: -4.36 Total: -113.52 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -0.33 Total: -34.46 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -0.08 Total: -0.70 kcal Total: -79.66 3.07 -76.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028105994.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.336 kcal (2) G-P(sol) polarization free energy of solvation -79.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds