Wall clock time and date at job start Tue Mar 31 2020 21:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35674 * 116.99836 * 2 1 4 4 C 1.38706 * 120.13815 * 0.21384 * 3 2 1 5 5 C 1.38055 * 120.09547 * 180.27440 * 4 3 2 6 6 C 1.38641 * 120.37893 * 359.76390 * 5 4 3 7 7 Cl 1.73603 * 119.86308 * 179.97438 * 6 5 4 8 8 C 1.37894 * 120.27236 * 0.02562 * 6 5 4 9 9 C 1.39710 * 119.89576 * 359.97438 * 8 6 5 10 10 C 1.47542 * 120.18419 * 180.02562 * 9 8 6 11 11 O 1.21584 * 119.99777 * 180.02562 * 10 9 8 12 12 N 1.34771 * 120.00080 * 0.02562 * 10 9 8 13 13 C 1.46501 * 120.00079 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47178 * 184.87483 * 13 12 10 15 15 H 1.09002 * 109.99836 * 304.38212 * 14 13 12 16 16 C 1.54329 * 109.88041 * 65.47312 * 14 13 12 17 17 C 1.55157 * 102.94232 * 141.61021 * 16 14 13 18 18 C 1.54909 * 101.57841 * 324.49694 * 17 16 14 19 19 N 1.47018 * 109.88297 * 183.28121 * 14 13 12 20 20 C 1.36937 * 125.64763 * 61.68879 * 19 14 13 21 21 H 1.07992 * 120.00097 * 14.66771 * 20 19 14 22 22 C 1.38813 * 119.99552 * 194.66564 * 20 19 14 23 23 N 1.31615 * 120.00343 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99635 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47086 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46909 * 120.00065 * 24 22 20 27 27 H 1.48492 * 109.47336 * 240.00082 * 24 22 20 28 28 H 1.08997 * 109.47026 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47035 * 300.00122 * 1 2 3 30 30 H 1.08999 * 109.46929 * 59.99854 * 1 2 3 31 31 H 1.07992 * 119.94759 * 0.02562 * 4 3 2 32 32 H 1.08004 * 119.80573 * 179.74280 * 5 4 3 33 33 H 1.08008 * 120.04567 * 180.02562 * 8 6 5 34 34 H 0.97011 * 120.00185 * 0.02562 * 12 10 9 35 35 H 1.08999 * 109.46677 * 64.88442 * 13 12 10 36 36 H 1.08997 * 109.47254 * 304.87981 * 13 12 10 37 37 H 1.08998 * 110.71959 * 23.24256 * 16 14 13 38 38 H 1.08997 * 110.72170 * 259.97110 * 16 14 13 39 39 H 1.08991 * 111.00434 * 82.57197 * 17 16 14 40 40 H 1.09000 * 111.00269 * 206.42467 * 17 16 14 41 41 H 1.08999 * 110.36513 * 155.84770 * 18 17 16 42 42 H 1.08998 * 110.37298 * 278.05785 * 18 17 16 43 43 H 0.97006 * 120.00055 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 1.2923 2.3740 0.0045 5 6 1.9199 3.6036 -0.0012 6 6 3.3040 3.6843 -0.0066 7 17 4.0792 5.2376 -0.0144 8 6 4.0673 2.5359 -0.0067 9 6 3.4441 1.2855 -0.0009 10 6 4.2546 0.0527 -0.0005 11 8 3.7087 -1.0337 0.0041 12 7 5.6000 0.1308 -0.0051 13 6 6.4048 -1.0934 -0.0041 14 6 7.8864 -0.7296 0.1125 15 1 8.1657 -0.0427 -0.6865 16 6 8.1604 -0.0779 1.4844 17 6 9.5453 -0.6585 1.8745 18 6 9.4544 -2.0935 1.2982 19 7 8.7077 -1.9466 0.0356 20 6 8.7694 -2.8015 -1.0324 21 1 8.3797 -2.4957 -1.9920 22 6 9.3330 -4.0610 -0.8814 23 7 9.8075 -4.4338 0.2883 24 14 9.4166 -5.2275 -2.3381 25 1 8.8192 -4.5742 -3.5303 26 1 10.8346 -5.5676 -2.6190 27 1 8.6632 -6.4677 -2.0230 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.2138 2.3190 0.0084 32 1 1.3293 4.5078 -0.0019 33 1 5.1453 2.6031 -0.0104 34 1 6.0356 0.9976 -0.0084 35 1 6.2369 -1.6393 -0.9325 36 1 6.1162 -1.7173 0.8417 37 1 7.4010 -0.3713 2.2092 38 1 8.2090 1.0071 1.3931 39 1 10.3513 -0.0978 1.4015 40 1 9.6692 -0.6795 2.9573 41 1 10.4517 -2.4887 1.1052 42 1 8.9156 -2.7452 1.9859 43 1 10.2010 -5.3141 0.3939 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028303755.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:19 Heat of formation + Delta-G solvation = -26.275627 kcal Electronic energy + Delta-G solvation = -26759.050796 eV Core-core repulsion = 22831.303595 eV Total energy + Delta-G solvation = -3927.747201 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.79637 -39.00191 -37.94946 -37.50444 -36.40616 -34.22954 -32.50190 -31.86594 -30.27385 -29.60735 -28.62179 -27.50045 -25.13980 -24.40157 -23.36622 -22.31670 -20.57585 -20.09798 -19.62868 -18.63875 -17.47211 -16.81533 -16.61639 -16.08202 -15.66236 -15.54843 -15.07210 -14.82776 -14.69298 -14.23682 -14.03005 -13.84146 -13.62238 -13.22907 -12.94543 -12.84537 -12.33517 -12.16851 -12.05178 -11.87151 -11.70806 -11.62306 -11.30788 -11.25278 -10.97730 -10.92200 -10.78976 -10.21757 -10.07152 -9.92613 -9.82413 -9.71604 -9.56230 -9.51843 -8.66143 -8.56807 -8.41293 -6.82377 -5.75478 -3.12005 0.49696 0.84141 1.82241 2.77084 2.96166 3.37062 3.42460 3.47893 3.49640 3.64477 4.27809 4.32530 4.50472 4.62245 4.83564 4.87490 4.87912 5.06248 5.23895 5.29694 5.36499 5.41906 5.42973 5.53462 5.64364 5.74040 5.75422 5.83062 6.07895 6.08848 6.16147 6.26825 6.47917 6.57205 6.64495 6.73085 6.84009 7.02582 7.09137 7.53147 7.62982 7.80648 7.81222 8.26887 8.52138 9.18920 9.79477 10.46809 11.36624 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013060 B = 0.002907 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.489577 B = 9629.566146 C =10974.410074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.273 6.273 3 C 0.188 3.812 4 C -0.209 4.209 5 C -0.047 4.047 6 C -0.083 4.083 7 Cl -0.067 7.067 8 C -0.038 4.038 9 C -0.152 4.152 10 C 0.553 3.447 11 O -0.516 6.516 12 N -0.720 5.720 13 C 0.111 3.889 14 C 0.151 3.849 15 H 0.038 0.962 16 C -0.127 4.127 17 C -0.148 4.148 18 C 0.172 3.828 19 N -0.589 5.589 20 C -0.233 4.233 21 H 0.076 0.924 22 C -0.001 4.001 23 N -0.915 5.915 24 Si 0.910 3.090 25 H -0.278 1.278 26 H -0.290 1.290 27 H -0.289 1.289 28 H 0.105 0.895 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.143 0.857 32 H 0.139 0.861 33 H 0.144 0.856 34 H 0.392 0.608 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.026 0.974 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.483 19.008 1.771 25.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.183 6.183 3 C 0.139 3.861 4 C -0.228 4.228 5 C -0.066 4.066 6 C -0.110 4.110 7 Cl -0.038 7.038 8 C -0.058 4.058 9 C -0.157 4.157 10 C 0.338 3.662 11 O -0.393 6.393 12 N -0.372 5.372 13 C -0.014 4.014 14 C 0.043 3.957 15 H 0.055 0.945 16 C -0.165 4.165 17 C -0.187 4.187 18 C 0.047 3.953 19 N -0.313 5.313 20 C -0.361 4.361 21 H 0.094 0.906 22 C -0.199 4.199 23 N -0.561 5.561 24 Si 0.740 3.260 25 H -0.204 1.204 26 H -0.217 1.217 27 H -0.216 1.216 28 H 0.123 0.877 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.161 0.839 32 H 0.157 0.843 33 H 0.162 0.838 34 H 0.227 0.773 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.044 0.956 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -16.601 17.861 1.724 24.446 hybrid contribution -0.027 0.074 -0.714 0.719 sum -16.628 17.936 1.009 24.479 Atomic orbital electron populations 1.23220 0.78544 1.04684 1.01161 1.86453 1.20879 1.24924 1.86088 1.19136 0.91046 0.85127 0.90754 1.21193 1.00659 0.91203 1.09783 1.20960 0.92369 0.98136 0.95147 1.20592 0.92900 0.86828 1.10707 1.98377 1.81103 1.27100 1.97248 1.21093 1.00425 0.89367 0.94894 1.19479 0.91058 0.93958 1.11188 1.17824 0.82368 0.88102 0.77906 1.90845 1.71525 1.28320 1.48570 1.46059 1.05539 1.10767 1.74846 1.22252 0.91445 0.85028 1.02659 1.21138 0.88683 0.90782 0.95104 0.94477 1.22618 0.98250 0.98459 0.97165 1.23003 0.95919 1.00335 0.99454 1.21449 0.97704 0.89849 0.86249 1.44490 1.46272 1.25190 1.15346 1.19034 1.35558 0.93251 0.88295 0.90576 1.24916 1.01146 0.96901 0.96899 1.69948 1.44325 1.19960 1.21877 0.86075 0.77236 0.81087 0.81566 1.20356 1.21736 1.21599 0.87699 0.92464 0.92473 0.83908 0.84304 0.83803 0.77334 0.91364 0.91466 0.91769 0.92407 0.92304 0.92348 0.90993 0.95584 0.93665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 101.05 0.99 1.14 16 2 O -0.27 -3.65 8.57 -40.61 -0.35 -4.00 16 3 C 0.19 2.30 6.70 -38.70 -0.26 2.04 16 4 C -0.21 -1.81 9.03 -39.48 -0.36 -2.16 16 5 C -0.05 -0.38 9.81 -39.50 -0.39 -0.77 16 6 C -0.08 -0.78 6.31 -39.56 -0.25 -1.03 16 7 Cl -0.07 -0.58 28.94 -51.86 -1.50 -2.08 16 8 C -0.04 -0.40 9.31 -39.16 -0.36 -0.77 16 9 C -0.15 -2.02 5.89 -104.85 -0.62 -2.63 16 10 C 0.55 9.29 7.76 -12.47 -0.10 9.19 16 11 O -0.52 -10.84 15.16 -16.60 -0.25 -11.09 16 12 N -0.72 -11.24 5.29 -61.35 -0.32 -11.57 16 13 C 0.11 2.18 5.08 -4.04 -0.02 2.16 16 14 C 0.15 3.00 3.21 -66.95 -0.21 2.78 16 15 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 16 C -0.13 -2.12 6.14 -24.89 -0.15 -2.27 16 17 C -0.15 -2.72 7.09 -24.58 -0.17 -2.90 16 18 C 0.17 4.12 5.41 -2.53 -0.01 4.10 16 19 N -0.59 -14.65 3.13 -162.57 -0.51 -15.16 16 20 C -0.23 -6.41 9.74 -15.06 -0.15 -6.55 16 21 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 22 C 0.00 -0.04 5.47 -17.43 -0.10 -0.13 16 23 N -0.91 -26.73 10.58 55.49 0.59 -26.14 16 24 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.34 7.65 -51.93 -0.40 -0.06 16 30 H 0.06 0.34 7.67 -51.93 -0.40 -0.06 16 31 H 0.14 0.82 6.30 -52.49 -0.33 0.49 16 32 H 0.14 0.77 8.06 -52.48 -0.42 0.34 16 33 H 0.14 1.27 6.41 -52.48 -0.34 0.93 16 34 H 0.39 4.86 6.39 -40.82 -0.26 4.60 16 35 H 0.07 1.52 7.90 -51.93 -0.41 1.11 16 36 H 0.07 1.47 8.06 -51.93 -0.42 1.05 16 37 H 0.06 1.07 7.80 -51.93 -0.40 0.67 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.07 1.91 6.93 -51.93 -0.36 1.55 16 42 H 0.03 0.68 8.06 -51.93 -0.42 0.26 16 43 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 367.36 15.07 5.54 5.54 Total: -1.00 -33.50 367.36 -9.81 -43.31 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -5.82 Total: 1.79 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -2.16 Total: 2.20 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: -0.25 Total: -52.87 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.60 Total: -15.09 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.50 Total: -2.08 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.50 -9.81 -43.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028303755.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.037 kcal (2) G-P(sol) polarization free energy of solvation -33.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds