Wall clock time and date at job start Tue Mar 31 2020 21:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35732 * 117.00280 * 2 1 4 4 C 1.38973 * 119.91366 * 0.26955 * 3 2 1 5 5 C 1.37712 * 120.10122 * 180.28015 * 4 3 2 6 6 C 1.39741 * 119.93141 * 359.45002 * 5 4 3 7 7 C 1.47600 * 120.08238 * 180.25553 * 6 5 4 8 8 O 1.21587 * 120.00294 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99766 * 180.02562 * 7 6 5 10 10 C 1.46500 * 119.99682 * 180.02562 * 9 7 6 11 11 C 1.53007 * 109.46814 * 174.96670 * 10 9 7 12 12 H 1.08999 * 109.87292 * 55.56526 * 11 10 9 13 13 C 1.54322 * 109.88287 * 294.54401 * 11 10 9 14 14 C 1.55153 * 102.94628 * 218.39478 * 13 11 10 15 15 C 1.54910 * 101.58077 * 35.50093 * 14 13 11 16 16 N 1.47026 * 109.88006 * 176.73977 * 11 10 9 17 17 C 1.36938 * 125.64900 * 298.33778 * 16 11 10 18 18 H 1.08002 * 119.99657 * 345.84312 * 17 16 11 19 19 C 1.38811 * 119.99877 * 165.85347 * 17 16 11 20 20 N 1.31620 * 120.00509 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99727 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47267 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47100 * 119.99595 * 21 19 17 24 24 H 1.48499 * 109.46673 * 239.99634 * 21 19 17 25 25 C 1.39722 * 119.83139 * 0.27750 * 6 5 4 26 26 C 1.37817 * 119.89742 * 0.02562 * 25 6 5 27 27 Cl 1.73596 * 119.96571 * 179.97438 * 26 25 6 28 28 H 1.09000 * 109.46936 * 60.00273 * 1 2 3 29 29 H 1.08996 * 109.47038 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46919 * 300.00476 * 1 2 3 31 31 H 1.07996 * 119.94933 * 0.02562 * 4 3 2 32 32 H 1.08000 * 120.03536 * 179.72673 * 5 4 3 33 33 H 0.96996 * 120.00139 * 359.97438 * 9 7 6 34 34 H 1.08997 * 109.47128 * 294.96060 * 10 9 7 35 35 H 1.08995 * 109.47712 * 54.96634 * 10 9 7 36 36 H 1.09005 * 110.71819 * 336.76010 * 13 11 10 37 37 H 1.09002 * 110.71973 * 100.02446 * 13 11 10 38 38 H 1.08999 * 111.00547 * 153.57700 * 14 13 11 39 39 H 1.09001 * 111.00303 * 277.43201 * 14 13 11 40 40 H 1.08994 * 110.36731 * 81.83558 * 15 14 13 41 41 H 1.09003 * 110.36459 * 204.04357 * 15 14 13 42 42 H 0.96992 * 120.00282 * 180.02562 * 20 19 17 43 43 H 1.08002 * 120.04876 * 179.97438 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.2866 2.3738 0.0057 5 6 1.9078 3.6028 -0.0001 6 6 3.3032 3.6788 -0.0001 7 6 3.9725 4.9944 -0.0006 8 8 3.3097 6.0137 -0.0015 9 7 5.3183 5.0657 -0.0011 10 6 5.9826 6.3714 -0.0011 11 6 7.4947 6.1743 0.1249 12 1 7.8504 5.5188 -0.6700 13 6 7.8313 5.5616 1.5006 14 6 9.1411 6.2933 1.8959 15 6 8.8952 7.7075 1.3135 16 7 8.1765 7.4746 0.0476 17 6 8.1489 8.3279 -1.0231 18 1 7.7928 7.9802 -1.9816 19 6 8.5789 9.6395 -0.8766 20 7 9.0126 10.0634 0.2916 21 14 8.5419 10.8033 -2.3374 22 1 8.0159 10.0874 -3.5274 23 1 7.6637 11.9599 -2.0268 24 1 9.9171 11.2875 -2.6193 25 6 4.0631 2.5063 -0.0001 26 6 3.4342 1.2800 -0.0006 27 17 4.3766 -0.1778 -0.0012 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2083 2.3147 0.0105 32 1 1.3173 4.5070 -0.0002 33 1 5.8471 4.2525 -0.0008 34 1 5.7605 6.8921 -0.9325 35 1 5.6220 6.9626 0.8406 36 1 7.0400 5.7715 2.2203 37 1 8.0002 4.4882 1.4138 38 1 9.2557 6.3314 2.9792 39 1 10.0071 5.8238 1.4292 40 1 8.2820 8.2971 1.9950 41 1 9.8438 8.2108 1.1262 42 1 9.3127 10.9800 0.3941 43 1 5.1418 2.5610 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028307835.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:41 Heat of formation + Delta-G solvation = -28.354236 kcal Electronic energy + Delta-G solvation = -26367.642129 eV Core-core repulsion = 22439.804793 eV Total energy + Delta-G solvation = -3927.837336 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.78163 -39.53624 -37.85149 -37.33985 -36.54978 -34.38586 -32.51152 -31.36171 -30.99219 -29.58154 -28.58329 -27.82030 -25.06609 -24.25662 -23.15918 -22.80878 -20.57929 -20.12125 -19.62434 -18.82359 -17.76204 -16.86547 -16.62529 -16.31156 -15.68733 -15.56745 -15.05190 -14.84053 -14.49072 -14.47441 -14.14745 -13.91215 -13.62517 -13.57434 -13.01186 -12.87268 -12.47456 -12.09652 -11.92023 -11.90262 -11.78198 -11.52619 -11.43746 -11.29853 -11.20878 -10.94787 -10.81071 -10.25702 -10.10728 -9.98451 -9.86149 -9.77131 -9.67516 -9.35777 -8.79544 -8.61160 -8.51078 -6.85441 -5.77532 -3.14252 0.53415 0.75739 1.82794 2.68426 2.69314 3.32943 3.40220 3.46125 3.47818 3.60030 4.24654 4.38085 4.47508 4.65896 4.68639 4.72667 4.79457 4.99905 5.03312 5.20408 5.32762 5.39205 5.46975 5.53261 5.61364 5.73694 5.80131 5.93546 6.05086 6.08181 6.13992 6.23797 6.44979 6.53373 6.59423 6.67973 6.73865 6.79211 7.03930 7.51300 7.60201 7.71317 7.78872 8.24317 8.38920 9.16551 9.77064 10.44053 11.34375 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018347 B = 0.002460 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.756388 B =11380.837888 C =12212.299321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.303 6.303 3 C 0.157 3.843 4 C -0.207 4.207 5 C -0.015 4.015 6 C -0.153 4.153 7 C 0.555 3.445 8 O -0.538 6.538 9 N -0.716 5.716 10 C 0.109 3.891 11 C 0.151 3.849 12 H 0.038 0.962 13 C -0.127 4.127 14 C -0.149 4.149 15 C 0.172 3.828 16 N -0.588 5.588 17 C -0.233 4.233 18 H 0.077 0.923 19 C -0.002 4.002 20 N -0.915 5.915 21 Si 0.910 3.090 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.290 1.290 25 C -0.040 4.040 26 C -0.077 4.077 27 Cl -0.052 7.052 28 H 0.060 0.940 29 H 0.104 0.896 30 H 0.060 0.940 31 H 0.143 0.857 32 H 0.147 0.853 33 H 0.394 0.606 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.026 0.974 41 H 0.073 0.927 42 H 0.253 0.747 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.097 -21.749 1.793 25.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.215 6.215 3 C 0.110 3.890 4 C -0.226 4.226 5 C -0.034 4.034 6 C -0.157 4.157 7 C 0.341 3.659 8 O -0.416 6.416 9 N -0.367 5.367 10 C -0.016 4.016 11 C 0.043 3.957 12 H 0.056 0.944 13 C -0.165 4.165 14 C -0.187 4.187 15 C 0.047 3.953 16 N -0.313 5.313 17 C -0.362 4.362 18 H 0.094 0.906 19 C -0.199 4.199 20 N -0.561 5.561 21 Si 0.741 3.259 22 H -0.204 1.204 23 H -0.216 1.216 24 H -0.217 1.217 25 C -0.059 4.059 26 C -0.105 4.105 27 Cl -0.023 7.023 28 H 0.079 0.921 29 H 0.122 0.878 30 H 0.079 0.921 31 H 0.161 0.839 32 H 0.164 0.836 33 H 0.229 0.771 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.044 0.956 41 H 0.092 0.908 42 H 0.064 0.936 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -14.293 -21.067 1.742 25.517 hybrid contribution -0.017 0.294 -0.715 0.774 sum -14.310 -20.773 1.027 25.245 Atomic orbital electron populations 1.23185 0.77615 1.04515 1.01821 1.86127 1.21931 1.25846 1.87566 1.18912 0.90512 0.85270 0.94315 1.21195 1.00576 0.91212 1.09570 1.21195 0.93302 0.97944 0.90985 1.19962 0.94249 0.92971 1.08494 1.17996 0.82601 0.88090 0.77203 1.90800 1.64683 1.35986 1.50145 1.46079 1.05800 1.10792 1.74061 1.22304 0.94175 0.82395 1.02747 1.21139 0.89295 0.90162 0.95138 0.94442 1.22619 0.98486 0.98316 0.97081 1.23006 0.96387 0.99860 0.99469 1.21465 0.97512 0.90235 0.86093 1.44489 1.54302 1.17484 1.14981 1.19035 1.38676 0.90201 0.88252 0.90558 1.24913 1.01292 0.96759 0.96934 1.69944 1.47829 1.16375 1.21978 0.86072 0.77250 0.81051 0.81557 1.20357 1.21599 1.21713 1.21099 1.00553 0.89271 0.94998 1.19983 0.88806 0.88945 1.12734 1.98379 1.71576 1.35202 1.97147 0.92141 0.87759 0.92147 0.83893 0.83565 0.77125 0.91255 0.91359 0.91777 0.92378 0.92324 0.92280 0.95624 0.90849 0.93638 0.83766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.10 16 2 O -0.30 -2.63 9.94 -18.90 -0.19 -2.81 16 3 C 0.16 1.52 6.69 -39.00 -0.26 1.26 16 4 C -0.21 -1.78 9.01 -39.50 -0.36 -2.14 16 5 C -0.02 -0.16 9.58 -39.21 -0.38 -0.54 16 6 C -0.15 -1.86 5.87 -104.96 -0.62 -2.48 16 7 C 0.55 8.68 7.76 -12.44 -0.10 8.58 16 8 O -0.54 -10.53 16.33 5.29 0.09 -10.44 16 9 N -0.72 -10.67 5.29 -61.33 -0.32 -10.99 16 10 C 0.11 2.06 5.08 -4.04 -0.02 2.04 16 11 C 0.15 2.93 3.21 -66.95 -0.21 2.72 16 12 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 13 C -0.13 -2.08 6.14 -24.90 -0.15 -2.23 16 14 C -0.15 -2.69 7.08 -24.58 -0.17 -2.86 16 15 C 0.17 4.06 5.42 -2.53 -0.01 4.04 16 16 N -0.59 -14.44 3.13 -162.57 -0.51 -14.95 16 17 C -0.23 -6.34 9.75 -15.06 -0.15 -6.49 16 18 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 19 C 0.00 -0.05 5.47 -17.43 -0.10 -0.14 16 20 N -0.92 -26.53 10.56 55.49 0.59 -25.94 16 21 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 C -0.04 -0.41 9.31 -39.18 -0.36 -0.78 16 26 C -0.08 -0.80 6.32 -39.43 -0.25 -1.05 16 27 Cl -0.05 -0.52 28.49 -51.86 -1.48 -2.00 16 28 H 0.06 0.22 7.66 -51.93 -0.40 -0.18 16 29 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.22 7.64 -51.93 -0.40 -0.18 16 31 H 0.14 0.82 6.28 -52.49 -0.33 0.49 16 32 H 0.15 1.54 7.64 -52.49 -0.40 1.14 16 33 H 0.39 4.65 6.38 -40.82 -0.26 4.39 16 34 H 0.07 1.49 7.90 -51.93 -0.41 1.08 16 35 H 0.07 1.45 8.06 -51.93 -0.42 1.03 16 36 H 0.06 1.05 7.80 -51.93 -0.40 0.64 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.03 0.66 8.07 -51.93 -0.42 0.24 16 41 H 0.07 1.93 6.90 -51.93 -0.36 1.58 16 42 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.14 1.25 6.39 -52.49 -0.34 0.91 16 LS Contribution 368.69 15.07 5.56 5.56 Total: -1.00 -32.59 368.69 -9.23 -41.82 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -5.79 Total: 1.72 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -2.15 Total: 1.02 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: -0.25 Total: -51.88 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.10 Total: -13.26 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.48 Total: -2.00 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.59 -9.23 -41.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028307835.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.467 kcal (2) G-P(sol) polarization free energy of solvation -32.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds