Wall clock time and date at job start Tue Mar 31 2020 21:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35651 * 117.00108 * 2 1 4 4 C 1.38681 * 120.14253 * 0.27284 * 3 2 1 5 5 C 1.38094 * 120.11711 * 180.28047 * 4 3 2 6 6 C 1.38479 * 120.41239 * 359.44122 * 5 4 3 7 7 C 1.37966 * 120.28856 * 0.28780 * 6 5 4 8 8 Cl 1.73602 * 120.06254 * 180.02562 * 7 6 5 9 9 C 1.39842 * 119.87023 * 359.97438 * 7 6 5 10 10 C 1.47452 * 120.20257 * 179.97438 * 9 7 6 11 11 O 1.21598 * 120.00501 * 89.99745 * 10 9 7 12 12 N 1.34787 * 120.00053 * 270.00107 * 10 9 7 13 13 C 1.46490 * 120.00010 * 180.02562 * 12 10 9 14 14 C 1.53007 * 109.47183 * 186.15795 * 13 12 10 15 15 H 1.08998 * 109.87291 * 300.77640 * 14 13 12 16 16 C 1.54324 * 109.88433 * 179.75357 * 14 13 12 17 17 C 1.55160 * 102.93929 * 218.39100 * 16 14 13 18 18 C 1.54904 * 101.58393 * 35.50404 * 17 16 14 19 19 N 1.47030 * 109.87927 * 61.94357 * 14 13 12 20 20 C 1.36937 * 125.64814 * 298.33790 * 19 14 13 21 21 H 1.07997 * 120.00061 * 335.77052 * 20 19 14 22 22 C 1.38808 * 119.99489 * 155.76715 * 20 19 14 23 23 N 1.31622 * 119.99649 * 159.73575 * 22 20 19 24 24 Si 1.86795 * 120.00529 * 339.73879 * 22 20 19 25 25 H 1.48504 * 109.47477 * 84.41231 * 24 22 20 26 26 H 1.48499 * 109.47673 * 204.41198 * 24 22 20 27 27 H 1.48496 * 109.47212 * 324.41388 * 24 22 20 28 28 H 1.08997 * 109.46727 * 59.99765 * 1 2 3 29 29 H 1.09000 * 109.47172 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46574 * 299.99961 * 1 2 3 31 31 H 1.07994 * 119.94092 * 359.97438 * 4 3 2 32 32 H 1.07994 * 119.79127 * 179.72550 * 5 4 3 33 33 H 1.08003 * 119.85805 * 180.29746 * 6 5 4 34 34 H 0.96997 * 119.99658 * 0.02562 * 12 10 9 35 35 H 1.09003 * 109.47288 * 306.15283 * 13 12 10 36 36 H 1.09001 * 109.47894 * 66.16034 * 13 12 10 37 37 H 1.08998 * 110.72035 * 336.74926 * 16 14 13 38 38 H 1.09000 * 110.71584 * 100.02794 * 16 14 13 39 39 H 1.09002 * 111.00029 * 153.57872 * 17 16 14 40 40 H 1.09000 * 111.00085 * 277.42870 * 17 16 14 41 41 H 1.09000 * 110.37188 * 81.82790 * 18 17 16 42 42 H 1.09002 * 110.36792 * 204.04681 * 18 17 16 43 43 H 0.97002 * 119.99677 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2086 0.0000 4 6 1.2926 2.3736 0.0057 5 6 1.9200 3.6037 -0.0001 6 6 3.3024 3.6856 -0.0001 7 6 4.0674 2.5374 -0.0002 8 17 5.8000 2.6469 0.0006 9 6 3.4445 1.2854 0.0003 10 6 4.2550 0.0536 -0.0004 11 8 4.5900 -0.4544 1.0524 12 7 4.6246 -0.5093 -1.1680 13 6 5.4293 -1.7334 -1.1686 14 6 5.8380 -2.0743 -2.6031 15 1 4.9492 -2.2143 -3.2183 16 6 6.6919 -3.3597 -2.6142 17 6 7.7619 -3.0567 -3.6962 18 6 7.9973 -1.5403 -3.4848 19 7 6.6679 -0.9941 -3.1567 20 6 6.2713 0.3040 -3.3378 21 1 5.2228 0.5379 -3.4482 22 6 7.2172 1.3191 -3.3794 23 7 6.9185 2.4743 -3.9350 24 14 8.9137 1.0457 -2.6472 25 1 9.7818 0.3730 -3.6467 26 1 9.5093 2.3543 -2.2754 27 1 8.7990 0.1925 -1.4372 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 0.2140 2.3187 0.0097 32 1 1.3290 4.5076 -0.0001 33 1 3.7838 4.6524 0.0002 34 1 4.3577 -0.1039 -2.0077 35 1 6.3226 -1.5813 -0.5628 36 1 4.8438 -2.5535 -0.7531 37 1 7.1602 -3.5200 -1.6430 38 1 6.0882 -4.2213 -2.8994 39 1 8.6748 -3.6232 -3.5122 40 1 7.3746 -3.2565 -4.6953 41 1 8.6896 -1.3753 -2.6592 42 1 8.3813 -1.0852 -4.3978 43 1 7.5794 3.1839 -3.9638 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028332344.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:26 Heat of formation + Delta-G solvation = -44.366980 kcal Electronic energy + Delta-G solvation = -28252.143034 eV Core-core repulsion = 24323.611333 eV Total energy + Delta-G solvation = -3928.531701 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.63409 -40.33146 -39.35508 -38.58523 -37.27497 -35.46018 -34.57798 -32.63373 -31.74946 -31.14396 -30.65291 -28.24943 -26.74750 -25.84875 -24.38290 -23.24486 -22.56464 -21.51683 -21.07096 -19.53849 -18.87823 -18.14107 -17.65557 -17.34263 -17.13512 -16.94123 -16.61694 -16.24805 -15.88906 -15.63226 -15.20311 -14.93099 -14.90572 -14.67367 -14.30809 -14.19189 -14.01200 -13.41287 -13.35261 -13.05099 -12.87193 -12.77787 -12.76932 -12.69982 -12.38260 -12.33439 -12.09733 -12.02872 -11.85091 -11.74941 -11.60963 -11.33164 -10.95805 -10.72186 -9.94593 -9.93685 -9.37108 -8.94327 -8.10865 -5.36473 -0.11116 0.18278 0.99251 1.23157 1.33204 1.39426 1.56498 2.26443 2.27750 2.42650 2.53437 3.18071 3.32721 3.63174 3.84736 3.87625 3.99269 4.00383 4.10012 4.16561 4.27682 4.30016 4.38864 4.42421 4.44279 4.46167 4.64733 4.73468 4.74922 4.80112 5.00878 5.01566 5.02909 5.10067 5.14726 5.22847 5.28166 5.48029 5.49126 5.55229 5.77663 6.16595 6.26156 6.58329 6.82672 7.21950 7.62663 8.20943 9.07907 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.012273 B = 0.005333 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.916396 B = 5248.673498 C = 6605.017634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.333 6.333 3 C 0.164 3.836 4 C -0.198 4.198 5 C -0.037 4.037 6 C -0.157 4.157 7 C 0.016 3.984 8 Cl -0.069 7.069 9 C -0.188 4.188 10 C 0.573 3.427 11 O -0.587 6.587 12 N -0.688 5.688 13 C 0.117 3.883 14 C 0.143 3.857 15 H 0.062 0.938 16 C -0.113 4.113 17 C -0.115 4.115 18 C 0.102 3.898 19 N -0.617 5.617 20 C -0.209 4.209 21 H 0.072 0.928 22 C 0.005 3.995 23 N -0.932 5.932 24 Si 0.905 3.095 25 H -0.275 1.275 26 H -0.319 1.319 27 H -0.290 1.290 28 H 0.078 0.922 29 H 0.117 0.883 30 H 0.076 0.924 31 H 0.181 0.819 32 H 0.186 0.814 33 H 0.153 0.847 34 H 0.407 0.593 35 H 0.032 0.968 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.004 0.996 42 H 0.038 0.962 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.707 -3.957 5.100 16.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.247 6.247 3 C 0.116 3.884 4 C -0.217 4.217 5 C -0.054 4.054 6 C -0.176 4.176 7 C -0.012 4.012 8 Cl -0.040 7.040 9 C -0.192 4.192 10 C 0.359 3.641 11 O -0.469 6.469 12 N -0.337 5.337 13 C -0.008 4.008 14 C 0.036 3.964 15 H 0.079 0.921 16 C -0.152 4.152 17 C -0.153 4.153 18 C -0.023 4.023 19 N -0.343 5.343 20 C -0.337 4.337 21 H 0.089 0.911 22 C -0.192 4.192 23 N -0.579 5.579 24 Si 0.738 3.262 25 H -0.202 1.202 26 H -0.248 1.248 27 H -0.217 1.217 28 H 0.096 0.904 29 H 0.135 0.865 30 H 0.095 0.905 31 H 0.198 0.802 32 H 0.203 0.797 33 H 0.171 0.829 34 H 0.245 0.755 35 H 0.051 0.949 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.126 0.874 39 H 0.110 0.890 40 H 0.102 0.898 41 H 0.022 0.978 42 H 0.057 0.943 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -14.204 -4.313 5.736 15.914 hybrid contribution 1.578 0.795 0.209 1.780 sum -12.626 -3.518 5.946 14.392 Atomic orbital electron populations 1.23525 0.75032 1.06061 1.03270 1.86065 1.24685 1.26226 1.87697 1.18855 0.89122 0.86491 0.93908 1.21694 1.02165 0.90524 1.07280 1.21511 0.92504 0.99144 0.92289 1.21257 0.94990 0.96815 1.04504 1.20954 0.85043 0.94010 1.01193 1.98435 1.10772 1.98381 1.96424 1.19056 0.92718 0.92795 1.14670 1.18073 0.78823 0.83404 0.83824 1.90678 1.58399 1.65124 1.32741 1.46045 1.51937 1.27479 1.08252 1.21953 0.93601 0.85848 0.99421 1.21564 0.95122 0.89313 0.90381 0.92057 1.22558 0.97162 0.95903 0.99530 1.22671 0.99790 0.93019 0.99866 1.22008 0.87874 0.95772 0.96622 1.45066 1.11046 1.06009 1.72130 1.18291 0.93164 0.80925 1.41348 0.91057 1.25203 0.98499 0.95169 1.00326 1.69850 1.35494 1.05651 1.46857 0.86565 0.85236 0.74458 0.79958 1.20174 1.24815 1.21678 0.90395 0.86494 0.90503 0.80196 0.79702 0.82903 0.75521 0.94914 0.90758 0.91031 0.87355 0.88989 0.89814 0.97816 0.94330 0.93432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.81 113.37 1.11 1.33 16 2 O -0.33 -9.38 9.94 -89.66 -0.89 -10.27 16 3 C 0.16 4.93 6.70 22.84 0.15 5.08 16 4 C -0.20 -4.10 9.03 22.34 0.20 -3.90 16 5 C -0.04 -0.73 10.03 22.29 0.22 -0.51 16 6 C -0.16 -4.42 9.81 22.26 0.22 -4.20 16 7 C 0.02 0.59 6.35 22.59 0.14 0.73 16 8 Cl -0.07 -3.07 28.04 -2.72 -0.08 -3.15 16 9 C -0.19 -7.27 5.64 -19.99 -0.11 -7.38 16 10 C 0.57 25.45 5.84 86.67 0.51 25.95 16 11 O -0.59 -29.51 17.09 -4.02 -0.07 -29.58 16 12 N -0.69 -29.29 4.80 -466.34 -2.24 -31.53 16 13 C 0.12 4.62 5.18 86.38 0.45 5.07 16 14 C 0.14 5.17 3.34 45.34 0.15 5.32 16 15 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 16 C -0.11 -3.13 6.48 31.78 0.21 -2.92 16 17 C -0.12 -3.38 7.08 31.99 0.23 -3.15 16 18 C 0.10 4.28 4.73 86.85 0.41 4.69 16 19 N -0.62 -28.06 2.86 -668.24 -1.91 -29.97 16 20 C -0.21 -11.09 8.87 84.03 0.75 -10.34 16 21 H 0.07 3.99 6.56 -2.91 -0.02 3.98 16 22 C 0.00 0.26 5.45 84.86 0.46 0.72 16 23 N -0.93 -56.08 13.97 21.65 0.30 -55.78 16 24 Si 0.91 48.73 24.33 68.60 1.67 50.40 16 25 H -0.28 -14.04 6.67 99.48 0.66 -13.37 16 26 H -0.32 -17.74 7.11 99.48 0.71 -17.04 16 27 H -0.29 -16.09 6.76 99.48 0.67 -15.42 16 28 H 0.08 0.85 7.67 -2.39 -0.02 0.83 16 29 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.08 0.82 7.65 -2.39 -0.02 0.81 16 31 H 0.18 2.07 6.30 -2.91 -0.02 2.05 16 32 H 0.19 1.88 8.06 -2.91 -0.02 1.86 16 33 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 34 H 0.41 17.72 5.94 -92.71 -0.55 17.17 16 35 H 0.03 1.48 8.12 -2.39 -0.02 1.46 16 36 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 37 H 0.07 1.96 7.85 -2.39 -0.02 1.94 16 38 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.00 0.19 5.44 -2.39 -0.01 0.18 16 42 H 0.04 1.74 7.17 -2.39 -0.02 1.72 16 43 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -78.80 361.89 2.29 -76.51 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.42 Total: 16.88 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: 5.10 Total: 16.49 kcal Atomic # 7 Polarization: -113.43 SS G_CDS: -3.85 Total: -117.28 kcal Atomic # 8 Polarization: -38.88 SS G_CDS: -0.96 Total: -39.85 kcal Atomic # 14 Polarization: 48.73 SS G_CDS: 1.67 Total: 50.40 kcal Atomic # 17 Polarization: -3.07 SS G_CDS: -0.08 Total: -3.15 kcal Total: -78.80 2.29 -76.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028332344.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.140 kcal (2) G-P(sol) polarization free energy of solvation -78.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds