Wall clock time and date at job start Tue Mar 31 2020 20:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21277 * 120.00118 * 2 1 4 4 N 1.34787 * 119.99845 * 180.02562 * 2 1 3 5 5 C 1.38900 * 119.99731 * 179.97438 * 4 2 1 6 6 N 1.29510 * 125.26970 * 179.97438 * 5 4 2 7 7 C 1.33638 * 115.67027 * 180.02562 * 6 5 4 8 8 C 1.47194 * 122.50286 * 180.02562 * 7 6 5 9 9 O 1.21644 * 120.00275 * 179.97438 * 8 7 6 10 10 N 1.34779 * 119.99949 * 359.97166 * 8 7 6 11 11 C 1.46500 * 120.00051 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.47244 * 180.02562 * 11 10 8 13 13 H 1.09004 * 110.63930 * 305.70022 * 12 11 10 14 14 C 1.55154 * 110.72063 * 182.56021 * 12 11 10 15 15 C 1.54905 * 101.58220 * 206.13266 * 14 12 11 16 16 N 1.47428 * 104.83101 * 37.01060 * 15 14 12 17 17 C 1.36938 * 125.64851 * 155.89959 * 16 15 14 18 18 H 1.08000 * 119.99857 * 179.97438 * 17 16 15 19 19 C 1.38809 * 120.00101 * 359.97438 * 17 16 15 20 20 N 1.31624 * 119.99808 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00071 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46878 * 90.00279 * 21 19 17 23 23 H 1.48499 * 109.47026 * 210.00008 * 21 19 17 24 24 H 1.48500 * 109.47138 * 330.00129 * 21 19 17 25 25 C 1.47322 * 108.73523 * 335.71689 * 16 15 14 26 26 C 1.34891 * 114.99573 * 0.02562 * 7 6 5 27 27 S 1.70983 * 109.19581 * 0.02562 * 26 7 6 28 28 H 1.09005 * 109.46866 * 269.99564 * 1 2 3 29 29 H 1.08992 * 109.47396 * 29.99805 * 1 2 3 30 30 H 1.09008 * 109.47242 * 149.99833 * 1 2 3 31 31 H 0.96991 * 119.99877 * 0.02562 * 4 2 1 32 32 H 0.97000 * 120.00377 * 0.02562 * 10 8 7 33 33 H 1.08995 * 109.47435 * 300.00383 * 11 10 8 34 34 H 1.08999 * 109.47025 * 60.00464 * 11 10 8 35 35 H 1.09000 * 111.00603 * 324.21282 * 14 12 11 36 36 H 1.09004 * 111.00232 * 88.02416 * 14 12 11 37 37 H 1.09005 * 110.36754 * 155.84524 * 15 14 12 38 38 H 1.08992 * 110.37092 * 278.06498 * 15 14 12 39 39 H 0.96999 * 119.99543 * 179.97438 * 20 19 17 40 40 H 1.08999 * 110.06109 * 241.86946 * 25 16 15 41 41 H 1.08994 * 109.85142 * 120.61221 * 25 16 15 42 42 H 1.07998 * 125.39976 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 3.5699 -1.1673 -0.0011 6 7 4.3177 -2.2246 -0.0011 7 6 5.6354 -2.0018 -0.0011 8 6 6.6223 -3.0938 -0.0017 9 8 7.8117 -2.8388 -0.0022 10 7 6.2081 -4.3764 -0.0017 11 6 7.1903 -5.4634 -0.0018 12 6 6.4620 -6.8090 -0.0024 13 1 5.7554 -6.8638 0.8258 14 6 7.4756 -7.9818 0.0623 15 6 6.6752 -9.1224 -0.6145 16 7 5.9169 -8.4627 -1.6931 17 6 5.4469 -9.0716 -2.8260 18 1 4.8995 -8.4985 -3.5596 19 6 5.6741 -10.4255 -3.0315 20 7 6.3418 -11.1238 -2.1376 21 14 5.0324 -11.2563 -4.5766 22 1 6.0602 -11.1754 -5.6453 23 1 4.7331 -12.6812 -4.2845 24 1 3.7938 -10.5728 -5.0281 25 6 5.7444 -7.0407 -1.3488 26 6 5.9935 -0.7012 -0.0006 27 16 4.5859 0.2694 0.0008 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 1.6959 -2.0072 -0.0013 32 1 5.2597 -4.5799 -0.0017 33 1 7.8152 -5.3884 -0.8917 34 1 7.8151 -5.3885 0.8882 35 1 8.3785 -7.7496 -0.5024 36 1 7.7171 -8.2329 1.0952 37 1 7.3539 -9.8679 -1.0291 38 1 5.9956 -9.5852 0.1009 39 1 6.5002 -12.0700 -2.2810 40 1 4.6846 -6.8060 -1.2493 41 1 6.1936 -6.4158 -2.1207 42 1 7.0083 -0.3318 -0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028650402.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:57 Heat of formation + Delta-G solvation = 1.864520 kcal Electronic energy + Delta-G solvation = -25918.592312 eV Core-core repulsion = 22026.401817 eV Total energy + Delta-G solvation = -3892.190495 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.95819 -40.25070 -38.69418 -37.52756 -35.41277 -34.63122 -32.47586 -31.32599 -29.87801 -29.55881 -28.33908 -26.18312 -25.04478 -23.61666 -22.43165 -21.86822 -20.43780 -19.85524 -19.50183 -18.81019 -17.55410 -17.27225 -16.85200 -16.62917 -16.46827 -15.68821 -15.43221 -15.02699 -14.74213 -14.62638 -14.19299 -13.96973 -13.62671 -13.42473 -13.28756 -13.00020 -12.72468 -12.47707 -12.28590 -11.74957 -11.68729 -11.50364 -11.43143 -10.94065 -10.79274 -10.71283 -10.45972 -10.28846 -10.15959 -10.04568 -9.94551 -9.75788 -9.71192 -9.49694 -8.96861 -8.63822 -8.60232 -6.81753 -5.64120 -3.05557 0.28142 0.66509 1.43957 1.44839 2.07745 2.13593 3.31997 3.35892 3.40511 3.45206 3.47222 3.95120 4.16601 4.49691 4.55193 4.71382 4.95751 5.04689 5.15911 5.18579 5.29457 5.30882 5.43834 5.54683 5.67118 5.73001 5.92016 6.09679 6.14005 6.27476 6.37491 6.48134 6.59176 6.61448 6.75540 6.94163 7.15024 7.17737 7.53141 7.63667 7.64517 7.87143 8.23577 8.37943 9.23637 9.84345 10.49655 11.39915 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013791 B = 0.002362 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.864566 B =11853.370596 C =13308.488188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.512 3.488 3 O -0.511 6.511 4 N -0.621 5.621 5 C 0.248 3.752 6 N -0.475 5.475 7 C 0.032 3.968 8 C 0.589 3.411 9 O -0.539 6.539 10 N -0.705 5.705 11 C 0.131 3.869 12 C -0.114 4.114 13 H 0.076 0.924 14 C -0.135 4.135 15 C 0.152 3.848 16 N -0.605 5.605 17 C -0.221 4.221 18 H 0.076 0.924 19 C -0.013 4.013 20 N -0.923 5.923 21 Si 0.914 3.086 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.141 3.859 26 C -0.261 4.261 27 S 0.271 5.729 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.428 0.572 32 H 0.410 0.590 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.107 0.893 38 H 0.012 0.988 39 H 0.252 0.748 40 H 0.019 0.981 41 H 0.025 0.975 42 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.229 23.489 7.979 26.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.300 3.700 3 O -0.386 6.386 4 N -0.272 5.272 5 C -0.121 4.121 6 N -0.198 5.198 7 C -0.103 4.103 8 C 0.373 3.627 9 O -0.417 6.417 10 N -0.355 5.355 11 C 0.008 3.992 12 C -0.133 4.133 13 H 0.094 0.906 14 C -0.174 4.174 15 C 0.027 3.973 16 N -0.331 5.331 17 C -0.350 4.350 18 H 0.094 0.906 19 C -0.208 4.208 20 N -0.572 5.572 21 Si 0.745 3.255 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.208 1.208 25 C 0.015 3.985 26 C -0.404 4.404 27 S 0.523 5.477 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.109 0.891 31 H 0.268 0.732 32 H 0.245 0.755 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.125 0.875 38 H 0.030 0.970 39 H 0.062 0.938 40 H 0.037 0.963 41 H 0.043 0.957 42 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -9.486 24.739 7.872 27.640 hybrid contribution -0.505 -1.850 -0.764 2.064 sum -9.991 22.888 7.108 25.966 Atomic orbital electron populations 1.21864 0.88435 1.06208 1.05929 1.21377 0.91750 0.82055 0.74816 1.90691 1.69589 1.30674 1.47636 1.42945 1.01533 1.11681 1.71077 1.24307 0.89852 0.93739 1.04207 1.67027 1.03282 1.29466 1.20021 1.19886 0.88590 0.93719 1.08086 1.17101 0.86705 0.82044 0.76900 1.90813 1.15933 1.83883 1.51052 1.45915 1.11533 1.05007 1.73083 1.21533 0.90898 0.84547 1.02266 1.22440 0.98540 0.93174 0.99184 0.90563 1.23006 0.97885 0.96352 1.00166 1.21925 0.93984 0.92807 0.88561 1.44584 1.64322 1.03267 1.20930 1.19081 1.28291 0.91927 0.95652 0.90577 1.24788 1.01023 0.96325 0.98652 1.69800 1.45441 1.07328 1.34608 0.86071 0.78326 0.78731 0.82366 1.21598 1.21662 1.20784 1.21380 0.96340 0.88026 0.92733 1.26921 1.07800 0.97712 1.08001 1.84874 0.91089 1.05345 1.66395 0.87664 0.87651 0.89072 0.73250 0.75452 0.91007 0.91417 0.91799 0.92100 0.87518 0.97038 0.93750 0.96296 0.95736 0.79257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.28 10.30 36.00 0.37 0.09 16 2 C 0.51 3.14 7.90 -10.98 -0.09 3.05 16 3 O -0.51 -4.90 14.61 5.56 0.08 -4.82 16 4 N -0.62 -4.12 5.40 -11.91 -0.06 -4.19 16 5 C 0.25 2.52 8.36 -87.54 -0.73 1.79 16 6 N -0.47 -5.75 10.11 -10.51 -0.11 -5.86 16 7 C 0.03 0.43 6.66 -84.63 -0.56 -0.14 16 8 C 0.59 9.18 7.79 -12.62 -0.10 9.09 16 9 O -0.54 -9.77 16.65 5.24 0.09 -9.68 16 10 N -0.71 -10.40 5.43 -61.45 -0.33 -10.73 16 11 C 0.13 2.04 5.00 -4.04 -0.02 2.02 16 12 C -0.11 -1.96 2.98 -88.79 -0.26 -2.23 16 13 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 14 C -0.13 -2.54 6.54 -24.59 -0.16 -2.70 16 15 C 0.15 3.70 5.89 -2.53 -0.01 3.69 16 16 N -0.60 -15.65 3.40 -169.84 -0.58 -16.23 16 17 C -0.22 -6.23 10.28 -15.06 -0.15 -6.39 16 18 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 19 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 20 N -0.92 -27.06 10.09 55.49 0.56 -26.50 16 21 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 C 0.14 2.95 6.67 -2.90 -0.02 2.93 16 26 C -0.26 -2.99 10.55 29.54 0.31 -2.68 16 27 S 0.27 2.65 20.29 -107.50 -2.18 0.47 16 28 H 0.10 0.04 8.14 -51.93 -0.42 -0.38 16 29 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.09 -0.01 8.14 -51.92 -0.42 -0.44 16 31 H 0.43 1.73 8.82 -40.82 -0.36 1.37 16 32 H 0.41 5.63 7.88 -40.82 -0.32 5.31 16 33 H 0.07 1.22 8.00 -51.93 -0.42 0.80 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 1.20 8.05 -51.93 -0.42 0.78 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.11 2.93 5.87 -51.93 -0.30 2.62 16 38 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.02 0.53 7.73 -51.93 -0.40 0.13 16 42 H 0.19 1.96 7.99 -52.49 -0.42 1.54 16 LS Contribution 366.85 15.07 5.53 5.53 Total: -1.00 -35.40 366.85 -9.13 -44.52 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -5.57 Total: 2.24 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: -1.53 Total: 8.09 kcal Atomic # 7 Polarization: -62.99 SS G_CDS: -0.52 Total: -63.51 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: 0.17 Total: -14.50 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Atomic # 16 Polarization: 2.65 SS G_CDS: -2.18 Total: 0.47 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.40 -9.13 -44.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028650402.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.386 kcal (2) G-P(sol) polarization free energy of solvation -35.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds