Wall clock time and date at job start Tue Mar 31 2020 20:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21277 * 119.99918 * 2 1 4 4 N 1.34773 * 120.00433 * 179.97438 * 2 1 3 5 5 C 1.38899 * 120.00456 * 180.02562 * 4 2 1 6 6 N 1.29518 * 125.27138 * 180.02562 * 5 4 2 7 7 C 1.33636 * 115.66725 * 179.97438 * 6 5 4 8 8 C 1.47202 * 122.50137 * 179.97438 * 7 6 5 9 9 O 1.21641 * 119.99733 * 180.02562 * 8 7 6 10 10 N 1.34775 * 119.99918 * 0.02562 * 8 7 6 11 11 C 1.46497 * 119.99944 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47114 * 180.02562 * 11 10 8 13 13 H 1.08997 * 110.92180 * 57.44684 * 12 11 10 14 14 C 1.55155 * 111.00532 * 181.35298 * 12 11 10 15 15 C 1.54327 * 102.94571 * 153.57522 * 14 12 11 16 16 N 1.47024 * 107.26774 * 337.80617 * 15 14 12 17 17 C 1.36941 * 125.64618 * 179.20447 * 16 15 14 18 18 H 1.08005 * 119.99780 * 179.68989 * 17 16 15 19 19 C 1.38813 * 119.99913 * 359.69358 * 17 16 15 20 20 N 1.31616 * 119.99926 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99719 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47341 * 89.99896 * 21 19 17 23 23 H 1.48503 * 109.46756 * 209.99724 * 21 19 17 24 24 H 1.48496 * 109.46957 * 329.99498 * 21 19 17 25 25 C 1.47426 * 108.70449 * 358.94057 * 16 15 14 26 26 C 1.34893 * 114.99585 * 0.26305 * 7 6 5 27 27 S 1.70979 * 109.20003 * 359.59907 * 26 7 6 28 28 H 1.09005 * 109.46942 * 269.99855 * 1 2 3 29 29 H 1.08991 * 109.47318 * 29.99985 * 1 2 3 30 30 H 1.08998 * 109.47205 * 150.00353 * 1 2 3 31 31 H 0.97007 * 119.99747 * 0.02562 * 4 2 1 32 32 H 0.97000 * 120.00160 * 0.02562 * 10 8 7 33 33 H 1.09002 * 109.46937 * 60.00106 * 11 10 8 34 34 H 1.09002 * 109.47231 * 300.00009 * 11 10 8 35 35 H 1.08999 * 110.71965 * 271.93488 * 14 12 11 36 36 H 1.09000 * 110.72417 * 35.03508 * 14 12 11 37 37 H 1.08995 * 109.88184 * 218.39040 * 15 14 12 38 38 H 1.09002 * 109.88385 * 97.22047 * 15 14 12 39 39 H 0.97001 * 119.99407 * 180.02562 * 20 19 17 40 40 H 1.09002 * 110.36518 * 142.96440 * 25 16 15 41 41 H 1.08995 * 110.36673 * 265.17549 * 25 16 15 42 42 H 1.08010 * 125.40010 * 179.69510 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.5699 -1.1671 0.0011 6 7 4.3178 -2.2245 0.0011 7 6 5.6354 -2.0016 0.0011 8 6 6.6224 -3.0937 0.0017 9 8 7.8118 -2.8386 0.0022 10 7 6.2083 -4.3763 0.0018 11 6 7.1905 -5.4631 0.0018 12 6 6.4623 -6.8087 0.0012 13 1 5.7955 -6.8900 -0.8572 14 6 7.4710 -7.9870 0.0355 15 6 6.6587 -9.1183 0.7003 16 7 5.5737 -8.4855 1.4645 17 6 4.6175 -9.1458 2.1890 18 1 3.8624 -8.5872 2.7222 19 6 4.6188 -10.5331 2.2383 20 7 5.5388 -11.2138 1.5882 21 14 3.3140 -11.4337 3.2261 22 1 2.1416 -11.7133 2.3587 23 1 3.8719 -12.7137 3.7319 24 1 2.8915 -10.5903 4.3729 25 6 5.6895 -7.0223 1.3267 26 6 5.9935 -0.7011 0.0067 27 16 4.5860 0.2697 0.0008 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6959 -2.0072 0.0005 32 1 5.2599 -4.5797 0.0011 33 1 7.8153 -5.3881 0.8919 34 1 7.8154 -5.3882 -0.8882 35 1 7.7694 -8.2687 -0.9743 36 1 8.3435 -7.7306 0.6365 37 1 7.2999 -9.6902 1.3710 38 1 6.2406 -9.7731 -0.0643 39 1 5.5394 -12.1832 1.6224 40 1 4.7006 -6.5676 1.2668 41 1 6.2478 -6.6054 2.1648 42 1 7.0084 -0.3315 0.0123 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028650403.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:00 Heat of formation + Delta-G solvation = 0.388809 kcal Electronic energy + Delta-G solvation = -25950.556232 eV Core-core repulsion = 22058.301744 eV Total energy + Delta-G solvation = -3892.254487 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -40.94831 -40.24537 -38.68953 -37.54127 -35.40095 -34.63367 -32.46697 -31.31498 -29.88641 -29.55168 -28.36317 -26.18276 -25.03656 -23.62365 -22.43882 -21.85710 -20.35564 -19.89553 -19.55613 -18.81239 -17.54956 -17.26210 -16.84507 -16.60839 -16.45777 -15.67894 -15.42879 -14.97446 -14.71642 -14.59805 -14.23065 -13.96531 -13.61031 -13.38881 -13.26988 -13.07805 -12.85374 -12.32612 -12.27037 -11.98060 -11.72632 -11.46788 -11.35027 -10.89471 -10.79095 -10.70282 -10.47085 -10.27004 -10.16477 -10.03792 -9.87107 -9.79162 -9.70490 -9.63910 -8.96987 -8.59874 -8.58850 -6.81620 -5.70240 -3.03528 0.28705 0.67255 1.44633 1.45579 2.09163 2.14364 3.32122 3.35636 3.39718 3.44551 3.46889 3.96320 4.17528 4.50011 4.56475 4.73439 4.96168 5.05300 5.15387 5.19422 5.27809 5.31271 5.45617 5.55918 5.67354 5.72340 5.92883 6.07413 6.08893 6.28606 6.37232 6.48113 6.54076 6.56361 6.71563 6.94533 7.15952 7.18951 7.57148 7.64637 7.65281 7.83961 8.23329 8.27452 9.23389 9.83811 10.50310 11.41622 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.012435 B = 0.002512 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.206441 B =11143.253476 C =13135.694115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.513 3.487 3 O -0.512 6.512 4 N -0.621 5.621 5 C 0.249 3.751 6 N -0.474 5.474 7 C 0.032 3.968 8 C 0.590 3.410 9 O -0.540 6.540 10 N -0.705 5.705 11 C 0.131 3.869 12 C -0.117 4.117 13 H 0.080 0.920 14 C -0.135 4.135 15 C 0.177 3.823 16 N -0.606 5.606 17 C -0.227 4.227 18 H 0.077 0.923 19 C -0.009 4.009 20 N -0.922 5.922 21 Si 0.912 3.088 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.142 3.858 26 C -0.262 4.262 27 S 0.271 5.729 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.428 0.572 32 H 0.411 0.589 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.043 0.957 38 H 0.046 0.954 39 H 0.252 0.748 40 H 0.036 0.964 41 H 0.019 0.981 42 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.759 24.047 -6.053 25.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.300 3.700 3 O -0.386 6.386 4 N -0.272 5.272 5 C -0.121 4.121 6 N -0.198 5.198 7 C -0.103 4.103 8 C 0.373 3.627 9 O -0.418 6.418 10 N -0.355 5.355 11 C 0.008 3.992 12 C -0.137 4.137 13 H 0.098 0.902 14 C -0.174 4.174 15 C 0.053 3.947 16 N -0.333 5.333 17 C -0.356 4.356 18 H 0.095 0.905 19 C -0.206 4.206 20 N -0.570 5.570 21 Si 0.742 3.258 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.016 3.984 26 C -0.405 4.405 27 S 0.523 5.477 28 H 0.124 0.876 29 H 0.123 0.877 30 H 0.109 0.891 31 H 0.268 0.732 32 H 0.246 0.754 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.054 0.946 41 H 0.037 0.963 42 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -7.058 25.272 -5.994 26.915 hybrid contribution -0.739 -1.997 0.546 2.198 sum -7.797 23.275 -5.448 25.144 Atomic orbital electron populations 1.21864 0.88432 1.06148 1.06001 1.21374 0.91753 0.82052 0.74801 1.90689 1.69594 1.30678 1.47673 1.42951 1.01538 1.11705 1.71038 1.24311 0.89859 0.93713 1.04170 1.67035 1.03271 1.29450 1.20002 1.19885 0.88602 0.93706 1.08094 1.17099 0.86696 0.82044 0.76879 1.90809 1.15943 1.83896 1.51132 1.45904 1.11598 1.04962 1.73023 1.21467 0.90889 0.84700 1.02164 1.22605 0.98390 0.92567 1.00148 0.90173 1.22862 0.97654 0.96272 1.00564 1.21147 0.88442 0.90866 0.94273 1.44486 1.31764 0.99144 1.57878 1.19056 1.04822 0.89101 1.22601 0.90521 1.24806 0.98914 0.96247 1.00588 1.69968 1.35069 1.05925 1.46032 0.86118 0.80832 0.79302 0.79511 1.21636 1.21684 1.20732 1.21558 0.96667 0.87128 0.93037 1.26919 1.07788 0.97715 1.08053 1.84874 0.91096 1.05369 1.66403 0.87611 0.87675 0.89088 0.73207 0.75354 0.91136 0.91453 0.91965 0.92172 0.93921 0.93532 0.93776 0.94608 0.96334 0.79270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.31 10.30 36.00 0.37 0.06 16 2 C 0.51 3.21 7.90 -10.99 -0.09 3.13 16 3 O -0.51 -4.95 14.61 5.56 0.08 -4.87 16 4 N -0.62 -4.23 5.40 -11.91 -0.06 -4.29 16 5 C 0.25 2.55 8.36 -87.53 -0.73 1.82 16 6 N -0.47 -5.79 10.11 -10.51 -0.11 -5.89 16 7 C 0.03 0.42 6.66 -84.63 -0.56 -0.14 16 8 C 0.59 9.09 7.79 -12.62 -0.10 9.00 16 9 O -0.54 -9.64 16.65 5.24 0.09 -9.56 16 10 N -0.70 -10.31 5.40 -61.46 -0.33 -10.64 16 11 C 0.13 2.00 5.12 -4.05 -0.02 1.98 16 12 C -0.12 -2.01 3.10 -88.47 -0.27 -2.28 16 13 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 14 C -0.13 -2.49 6.42 -24.90 -0.16 -2.65 16 15 C 0.18 4.32 5.37 -3.06 -0.02 4.31 16 16 N -0.61 -15.56 3.39 -170.07 -0.58 -16.14 16 17 C -0.23 -6.37 10.28 -15.06 -0.15 -6.52 16 18 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 19 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 20 N -0.92 -27.24 10.31 55.49 0.57 -26.67 16 21 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 25 C 0.14 2.93 6.41 -2.53 -0.02 2.91 16 26 C -0.26 -2.98 10.55 29.55 0.31 -2.66 16 27 S 0.27 2.65 20.29 -107.50 -2.18 0.46 16 28 H 0.11 0.08 8.14 -51.93 -0.42 -0.34 16 29 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.09 0.00 8.14 -51.93 -0.42 -0.43 16 31 H 0.43 1.84 8.82 -40.82 -0.36 1.48 16 32 H 0.41 5.69 7.82 -40.82 -0.32 5.37 16 33 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.06 1.05 8.04 -51.93 -0.42 0.64 16 37 H 0.04 1.15 7.51 -51.93 -0.39 0.76 16 38 H 0.05 1.25 7.38 -51.93 -0.38 0.86 16 39 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.02 0.40 8.01 -51.93 -0.42 -0.02 16 42 H 0.19 1.94 7.99 -52.48 -0.42 1.52 16 LS Contribution 367.59 15.07 5.54 5.54 Total: -1.00 -35.49 367.59 -9.17 -44.67 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -5.63 Total: 1.73 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: -1.54 Total: 8.58 kcal Atomic # 7 Polarization: -63.12 SS G_CDS: -0.51 Total: -63.63 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: 0.17 Total: -14.42 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 16 Polarization: 2.65 SS G_CDS: -2.18 Total: 0.46 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.49 -9.17 -44.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028650403.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.055 kcal (2) G-P(sol) polarization free energy of solvation -35.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds