Wall clock time and date at job start Tue Mar 31 2020 21:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35933 * 116.99750 * 2 1 4 4 C 1.38408 * 119.99166 * 0.02562 * 3 2 1 5 5 C 1.39549 * 119.81294 * 179.97438 * 4 3 2 6 6 C 1.47794 * 120.11059 * 179.97438 * 5 4 3 7 7 O 1.21561 * 119.99920 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99588 * 180.02562 * 6 5 4 9 9 C 1.46505 * 119.99638 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47097 * 179.97438 * 9 8 6 11 11 H 1.09005 * 110.63669 * 51.85851 * 10 9 8 12 12 C 1.55156 * 110.71830 * 174.99627 * 10 9 8 13 13 C 1.54906 * 101.61451 * 154.02508 * 12 10 9 14 14 N 1.47471 * 104.81210 * 323.04512 * 13 12 10 15 15 C 1.36937 * 125.62509 * 204.14198 * 14 13 12 16 16 H 1.08004 * 119.99479 * 179.91598 * 15 14 13 17 17 C 1.38806 * 120.00537 * 359.91425 * 15 14 13 18 18 N 1.31628 * 120.00035 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00199 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47376 * 90.00011 * 19 17 15 21 21 H 1.48499 * 109.46835 * 210.00000 * 19 17 15 22 22 H 1.48494 * 109.47029 * 329.99798 * 19 17 15 23 23 C 1.47017 * 108.71970 * 24.07007 * 14 13 12 24 24 C 1.39633 * 119.77717 * 0.25529 * 5 4 3 25 25 C 1.37919 * 119.97890 * 359.44585 * 24 5 4 26 26 C 1.38416 * 120.19028 * 0.58063 * 25 24 5 27 27 Cl 1.73601 * 119.89085 * 179.71938 * 26 25 24 28 28 H 1.09005 * 109.46975 * 299.99862 * 1 2 3 29 29 H 1.08996 * 109.47518 * 59.99620 * 1 2 3 30 30 H 1.09001 * 109.47247 * 180.02562 * 1 2 3 31 31 H 1.08007 * 120.09555 * 0.02795 * 4 3 2 32 32 H 0.97001 * 120.00552 * 359.97438 * 8 6 5 33 33 H 1.09006 * 109.47066 * 59.99373 * 9 8 6 34 34 H 1.09000 * 109.47236 * 299.99784 * 9 8 6 35 35 H 1.09002 * 111.00677 * 272.12092 * 12 10 9 36 36 H 1.09002 * 111.00564 * 35.93350 * 12 10 9 37 37 H 1.09008 * 110.36753 * 81.85112 * 13 12 10 38 38 H 1.09001 * 110.37094 * 204.16995 * 13 12 10 39 39 H 0.96994 * 120.00079 * 179.97438 * 18 17 15 40 40 H 1.08998 * 109.88206 * 239.55467 * 23 14 13 41 41 H 1.09007 * 109.88177 * 118.39340 * 23 14 13 42 42 H 1.08000 * 120.00523 * 179.74704 * 24 5 4 43 43 H 1.07995 * 119.90568 * 180.29677 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 1.2920 2.3718 0.0005 5 6 1.9294 3.6133 0.0011 6 6 1.1307 4.8568 0.0011 7 8 -0.0836 4.7992 0.0001 8 7 1.7486 6.0545 0.0011 9 6 0.9569 7.2872 0.0016 10 6 1.8950 8.4959 0.0022 11 1 2.6282 8.4135 -0.8002 12 6 1.0895 9.8160 -0.1238 13 6 2.0438 10.8297 0.5553 14 7 2.6513 10.0847 1.6736 15 6 3.1786 10.6399 2.8089 16 1 3.6012 10.0056 3.5741 17 6 3.1699 12.0178 2.9763 18 7 2.6553 12.7909 2.0435 19 14 3.8898 12.7752 4.5248 20 1 5.3318 13.0594 4.3125 21 1 3.1763 14.0401 4.8348 22 1 3.7334 11.8281 5.6578 23 6 2.5956 8.6475 1.3687 24 6 3.3243 3.6767 -0.0043 25 6 4.0670 2.5145 0.0014 26 6 3.4337 1.2837 0.0003 27 17 4.3762 -0.1742 0.0002 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 0.2134 2.3169 0.0014 32 1 2.7176 6.1005 0.0015 33 1 0.3284 7.3150 0.8919 34 1 0.3279 7.3155 -0.8881 35 1 0.9245 10.0748 -1.1697 36 1 0.1436 9.7493 0.4138 37 1 2.8127 11.1550 -0.1455 38 1 1.4834 11.6865 0.9294 39 1 2.6489 13.7537 2.1607 40 1 2.0248 8.1273 2.1378 41 1 3.6055 8.2406 1.3147 42 1 3.8214 4.6355 -0.0081 43 1 5.1457 2.5649 0.0020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028844841.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:59 Heat of formation + Delta-G solvation = -27.349575 kcal Electronic energy + Delta-G solvation = -26018.623211 eV Core-core repulsion = 22090.829440 eV Total energy + Delta-G solvation = -3927.793771 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.87758 -39.63018 -37.89238 -37.52685 -36.65359 -34.81806 -32.65055 -31.51951 -30.75343 -29.76055 -28.39604 -27.64723 -25.70529 -24.38388 -23.20610 -22.63163 -20.92712 -20.10726 -19.84275 -18.79081 -17.09947 -16.96786 -16.68626 -16.65834 -16.26417 -15.84328 -15.44959 -14.87684 -14.63783 -14.54292 -14.23076 -13.91956 -13.65563 -13.60289 -12.95021 -12.90183 -12.54736 -12.30844 -11.91257 -11.85526 -11.80786 -11.77049 -11.56073 -11.46898 -11.19534 -10.98223 -10.83217 -10.50487 -10.21701 -10.09217 -10.02332 -9.81820 -9.55119 -9.38245 -9.08594 -8.67937 -8.67182 -6.86759 -5.68385 -3.10186 0.27787 0.83804 1.75151 2.51896 2.71914 3.02416 3.38086 3.41549 3.43224 3.45199 4.25974 4.37353 4.46543 4.55027 4.59911 4.78062 4.79534 4.91638 5.04047 5.13606 5.18965 5.22886 5.34927 5.48048 5.50866 5.63600 5.66930 5.78967 5.82947 6.00725 6.03390 6.05727 6.30028 6.32571 6.50642 6.54259 6.66668 6.75588 6.85675 7.38767 7.47854 7.59752 7.82602 8.05302 8.33320 9.19143 9.80096 10.44516 11.35658 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018055 B = 0.002120 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.408584 B =13204.855921 C =14098.103565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.304 6.304 3 C 0.130 3.870 4 C -0.141 4.141 5 C -0.086 4.086 6 C 0.554 3.446 7 O -0.537 6.537 8 N -0.715 5.715 9 C 0.132 3.868 10 C -0.115 4.115 11 H 0.077 0.923 12 C -0.135 4.135 13 C 0.152 3.848 14 N -0.605 5.605 15 C -0.223 4.223 16 H 0.077 0.923 17 C -0.011 4.011 18 N -0.922 5.922 19 Si 0.915 3.085 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.141 3.859 24 C -0.111 4.111 25 C -0.078 4.078 26 C -0.050 4.050 27 Cl -0.052 7.052 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.151 0.849 32 H 0.402 0.598 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.012 0.988 38 H 0.107 0.893 39 H 0.252 0.748 40 H 0.024 0.976 41 H 0.018 0.982 42 H 0.141 0.859 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.894 -24.156 -7.716 25.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.217 6.217 3 C 0.083 3.917 4 C -0.161 4.161 5 C -0.089 4.089 6 C 0.341 3.659 7 O -0.416 6.416 8 N -0.366 5.366 9 C 0.009 3.991 10 C -0.135 4.135 11 H 0.095 0.905 12 C -0.174 4.174 13 C 0.027 3.973 14 N -0.331 5.331 15 C -0.352 4.352 16 H 0.095 0.905 17 C -0.207 4.207 18 N -0.571 5.571 19 Si 0.745 3.255 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.207 1.207 23 C 0.015 3.985 24 C -0.130 4.130 25 C -0.096 4.096 26 C -0.077 4.077 27 Cl -0.023 7.023 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.123 0.877 31 H 0.169 0.831 32 H 0.237 0.763 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.030 0.970 38 H 0.125 0.875 39 H 0.063 0.937 40 H 0.042 0.958 41 H 0.036 0.964 42 H 0.158 0.842 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.582 -24.279 -7.606 25.492 hybrid contribution 0.825 0.435 0.763 1.206 sum -0.756 -23.844 -6.843 24.818 Atomic orbital electron populations 1.23191 0.77509 1.04476 1.02054 1.86166 1.21973 1.25291 1.88273 1.18533 0.90417 0.85268 0.97463 1.21307 1.01274 0.90075 1.03418 1.19901 0.93605 0.93464 1.01924 1.18117 0.87428 0.83394 0.76980 1.90778 1.13544 1.87348 1.49889 1.46019 1.10857 1.05720 1.74032 1.21539 0.93762 0.81431 1.02418 1.22457 0.97683 0.94177 0.99150 0.90500 1.23009 0.99343 0.94921 1.00159 1.21948 0.93217 0.94359 0.87797 1.44512 1.70053 0.99378 1.19124 1.19072 1.31320 0.90252 0.94520 0.90530 1.24794 1.01435 0.95965 0.98496 1.69795 1.50529 1.03535 1.33240 0.86069 0.78464 0.78689 0.82261 1.21621 1.21621 1.20692 1.21334 0.96395 0.88070 0.92698 1.21246 0.92442 0.98846 1.00494 1.20880 1.01008 0.89320 0.98428 1.20414 0.88835 0.89167 1.09330 1.98380 1.71602 1.35496 1.96840 0.92071 0.92112 0.87703 0.83113 0.76254 0.90905 0.91301 0.92070 0.91792 0.96958 0.87508 0.93699 0.95776 0.96402 0.84158 0.83427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 101.05 0.99 1.13 16 2 O -0.30 -2.87 9.94 -19.53 -0.19 -3.06 16 3 C 0.13 1.31 6.67 -39.26 -0.26 1.05 16 4 C -0.14 -1.47 8.58 -39.03 -0.33 -1.81 16 5 C -0.09 -0.93 5.87 -104.98 -0.62 -1.54 16 6 C 0.55 7.30 7.77 -12.35 -0.10 7.21 16 7 O -0.54 -8.81 16.34 5.31 0.09 -8.72 16 8 N -0.72 -8.66 5.42 -61.26 -0.33 -9.00 16 9 C 0.13 1.83 5.02 -4.04 -0.02 1.81 16 10 C -0.12 -1.82 2.95 -88.79 -0.26 -2.08 16 11 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 12 C -0.14 -2.41 6.53 -24.58 -0.16 -2.57 16 13 C 0.15 3.57 5.89 -2.50 -0.01 3.56 16 14 N -0.60 -15.12 3.40 -170.04 -0.58 -15.69 16 15 C -0.22 -6.15 10.27 -15.06 -0.15 -6.30 16 16 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 17 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 18 N -0.92 -26.58 10.09 55.49 0.56 -26.02 16 19 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 23 C 0.14 2.77 6.76 -3.07 -0.02 2.75 16 24 C -0.11 -0.96 9.54 -39.18 -0.37 -1.33 16 25 C -0.08 -0.64 9.80 -39.63 -0.39 -1.03 16 26 C -0.05 -0.48 6.34 -39.25 -0.25 -0.73 16 27 Cl -0.05 -0.48 28.49 -51.86 -1.48 -1.96 16 28 H 0.06 0.35 7.66 -51.93 -0.40 -0.04 16 29 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 30 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.15 1.51 5.88 -52.48 -0.31 1.20 16 32 H 0.40 3.98 6.50 -40.82 -0.27 3.72 16 33 H 0.07 1.13 7.94 -51.93 -0.41 0.72 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 1.14 8.05 -51.93 -0.42 0.72 16 37 H 0.01 0.31 8.14 -51.92 -0.42 -0.11 16 38 H 0.11 2.86 5.88 -51.93 -0.31 2.55 16 39 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 40 H 0.02 0.49 7.69 -51.93 -0.40 0.09 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.14 0.92 6.40 -52.49 -0.34 0.58 16 43 H 0.15 0.88 8.06 -52.49 -0.42 0.45 16 LS Contribution 368.56 15.07 5.55 5.55 Total: -1.00 -32.59 368.56 -9.21 -41.79 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -5.75 Total: 0.58 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -2.06 Total: -0.31 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: -0.35 Total: -50.71 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: -0.11 Total: -11.78 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.48 Total: -1.96 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.59 -9.21 -41.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028844841.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.443 kcal (2) G-P(sol) polarization free energy of solvation -32.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds