Wall clock time and date at job start Tue Mar 31 2020 21:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35932 * 116.99966 * 2 1 4 4 C 1.38407 * 119.98970 * 0.02562 * 3 2 1 5 5 C 1.39549 * 119.80460 * 179.97438 * 4 3 2 6 6 C 1.47796 * 120.10197 * 179.97438 * 5 4 3 7 7 O 1.21557 * 120.00675 * 359.72769 * 6 5 4 8 8 N 1.34777 * 119.99783 * 179.97438 * 6 5 4 9 9 C 1.46506 * 120.00271 * 179.97438 * 8 6 5 10 10 C 1.52993 * 109.47563 * 180.02562 * 9 8 6 11 11 H 1.09001 * 110.64228 * 305.70564 * 10 9 8 12 12 C 1.55148 * 110.72211 * 182.56194 * 10 9 8 13 13 C 1.54912 * 101.58314 * 206.13857 * 12 10 9 14 14 N 1.47421 * 104.83210 * 37.00483 * 13 12 10 15 15 C 1.36940 * 125.64419 * 155.90627 * 14 13 12 16 16 H 1.08007 * 119.99365 * 179.97438 * 15 14 13 17 17 C 1.38810 * 120.00667 * 359.97438 * 15 14 13 18 18 N 1.31616 * 119.99390 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00170 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47202 * 90.00250 * 19 17 15 21 21 H 1.48503 * 109.46698 * 209.99932 * 19 17 15 22 22 H 1.48495 * 109.47451 * 329.99787 * 19 17 15 23 23 C 1.47318 * 108.73917 * 335.72203 * 14 13 12 24 24 C 1.39620 * 119.78855 * 0.24918 * 5 4 3 25 25 C 1.37929 * 119.97523 * 359.53704 * 24 5 4 26 26 C 1.38411 * 120.18839 * 0.44325 * 25 24 5 27 27 Cl 1.73607 * 119.89058 * 179.76417 * 26 25 24 28 28 H 1.08995 * 109.46797 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46467 * 299.99519 * 1 2 3 30 30 H 1.08992 * 109.47204 * 59.99405 * 1 2 3 31 31 H 1.07992 * 120.09511 * 0.02562 * 4 3 2 32 32 H 0.96999 * 120.00043 * 0.02562 * 8 6 5 33 33 H 1.08996 * 109.47365 * 300.00749 * 9 8 6 34 34 H 1.09000 * 109.46679 * 60.00307 * 9 8 6 35 35 H 1.08992 * 111.00654 * 324.20919 * 12 10 9 36 36 H 1.09003 * 111.00628 * 88.02950 * 12 10 9 37 37 H 1.09002 * 110.36987 * 155.84953 * 13 12 10 38 38 H 1.09007 * 110.36427 * 278.06105 * 13 12 10 39 39 H 0.97005 * 119.99972 * 179.97438 * 18 17 15 40 40 H 1.08999 * 110.06137 * 241.86876 * 23 14 13 41 41 H 1.08997 * 109.85447 * 120.60574 * 23 14 13 42 42 H 1.08001 * 120.01690 * 179.72691 * 24 5 4 43 43 H 1.07995 * 119.90675 * 180.18536 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 1.2921 2.3718 0.0005 5 6 1.9297 3.6131 0.0011 6 6 1.1309 4.8567 0.0011 7 8 -0.0833 4.7993 -0.0044 8 7 1.7488 6.0544 0.0021 9 6 0.9572 7.2872 0.0016 10 6 1.8952 8.4958 0.0023 11 1 2.6005 8.4343 0.8312 12 6 1.0865 9.8183 0.0666 13 6 2.0630 10.8132 -0.6090 14 7 2.7047 10.0389 -1.6870 15 6 3.2690 10.5634 -2.8192 16 1 3.7164 9.9087 -3.5525 17 6 3.2661 11.9362 -3.0243 18 7 2.7204 12.7338 -2.1308 19 14 4.0353 12.6514 -4.5690 20 1 3.0084 12.7398 -5.6381 21 1 4.5632 14.0083 -4.2764 22 1 5.1457 11.7750 -5.0205 23 6 2.6425 8.6077 -1.3433 24 6 3.3244 3.6766 -0.0042 25 6 4.0671 2.5143 -0.0003 26 6 3.4338 1.2836 -0.0003 27 17 4.3762 -0.1744 -0.0016 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 0.2136 2.3169 0.0014 32 1 2.7177 6.1003 0.0025 33 1 0.3294 7.3155 -0.8890 34 1 0.3275 7.3150 0.8909 35 1 0.1586 9.7367 -0.4992 36 1 0.8882 10.1052 1.0993 37 1 1.5156 11.6595 -1.0239 38 1 2.8084 11.1588 0.1074 39 1 2.7186 13.6933 -2.2739 40 1 3.6497 8.2033 -1.2428 41 1 2.0982 8.0647 -2.1159 42 1 3.8216 4.6353 -0.0083 43 1 5.1459 2.5647 -0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028844842.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:02 Heat of formation + Delta-G solvation = -27.314612 kcal Electronic energy + Delta-G solvation = -26036.454357 eV Core-core repulsion = 22108.662102 eV Total energy + Delta-G solvation = -3927.792255 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.87577 -39.62974 -37.88647 -37.51953 -36.65057 -34.81018 -32.64872 -31.51685 -30.75023 -29.75465 -28.39276 -27.64486 -25.70610 -24.38337 -23.20790 -22.63016 -20.92655 -20.10188 -19.82885 -18.79719 -17.09570 -16.96651 -16.68387 -16.65657 -16.26202 -15.82911 -15.46026 -14.87341 -14.63512 -14.54543 -14.22874 -13.92254 -13.65133 -13.60159 -12.94667 -12.90308 -12.55215 -12.30575 -11.90982 -11.85301 -11.80815 -11.75641 -11.55764 -11.46194 -11.19273 -10.98494 -10.82322 -10.51902 -10.21844 -10.09161 -10.02289 -9.81328 -9.55461 -9.37962 -9.08390 -8.67942 -8.66967 -6.86944 -5.68341 -3.10164 0.28100 0.84098 1.75392 2.52150 2.72138 3.02664 3.38195 3.41843 3.43192 3.45042 4.26311 4.37550 4.46518 4.55310 4.60287 4.78251 4.79774 4.91944 5.04103 5.13780 5.19487 5.23202 5.34981 5.48151 5.50892 5.63457 5.66732 5.79284 5.82830 6.00682 6.03622 6.05936 6.29637 6.33087 6.49993 6.54184 6.66514 6.75835 6.85356 7.39040 7.47831 7.59369 7.82539 8.05554 8.33357 9.19133 9.79854 10.44410 11.35644 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.017700 B = 0.002142 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.515281 B =13066.707673 C =14003.439624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.304 6.304 3 C 0.130 3.870 4 C -0.141 4.141 5 C -0.086 4.086 6 C 0.555 3.445 7 O -0.537 6.537 8 N -0.715 5.715 9 C 0.132 3.868 10 C -0.115 4.115 11 H 0.077 0.923 12 C -0.135 4.135 13 C 0.152 3.848 14 N -0.604 5.604 15 C -0.223 4.223 16 H 0.077 0.923 17 C -0.012 4.012 18 N -0.922 5.922 19 Si 0.915 3.085 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.282 1.282 23 C 0.140 3.860 24 C -0.111 4.111 25 C -0.078 4.078 26 C -0.050 4.050 27 Cl -0.052 7.052 28 H 0.105 0.895 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.151 0.849 32 H 0.402 0.598 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.107 0.893 38 H 0.012 0.988 39 H 0.252 0.748 40 H 0.019 0.981 41 H 0.025 0.975 42 H 0.141 0.859 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.096 -23.944 7.904 25.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.217 6.217 3 C 0.083 3.917 4 C -0.161 4.161 5 C -0.089 4.089 6 C 0.341 3.659 7 O -0.416 6.416 8 N -0.366 5.366 9 C 0.008 3.992 10 C -0.135 4.135 11 H 0.095 0.905 12 C -0.174 4.174 13 C 0.027 3.973 14 N -0.331 5.331 15 C -0.352 4.352 16 H 0.095 0.905 17 C -0.207 4.207 18 N -0.571 5.571 19 Si 0.745 3.255 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.207 1.207 23 C 0.014 3.986 24 C -0.130 4.130 25 C -0.096 4.096 26 C -0.077 4.077 27 Cl -0.023 7.023 28 H 0.123 0.877 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.169 0.831 32 H 0.238 0.762 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.125 0.875 38 H 0.030 0.970 39 H 0.063 0.937 40 H 0.036 0.964 41 H 0.043 0.957 42 H 0.158 0.842 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.768 -24.069 7.793 25.361 hybrid contribution 0.836 0.413 -0.760 1.203 sum -0.932 -23.655 7.033 24.697 Atomic orbital electron populations 1.23189 0.77511 1.04473 1.02052 1.86166 1.21971 1.25294 1.88275 1.18533 0.90417 0.85267 0.97470 1.21303 1.01269 0.90074 1.03426 1.19896 0.93605 0.93463 1.01933 1.18117 0.87427 0.83395 0.76977 1.90776 1.13547 1.87350 1.49895 1.46015 1.10869 1.05715 1.74025 1.21535 0.93765 0.81455 1.02397 1.22459 0.97604 0.94208 0.99211 0.90505 1.23004 0.99301 0.94882 1.00218 1.21934 0.92675 0.94123 0.88583 1.44572 1.67919 0.99537 1.21037 1.19075 1.29769 0.90590 0.95730 0.90533 1.24791 1.01346 0.95908 0.98655 1.69792 1.49707 1.02960 1.34634 0.86069 0.78702 0.78400 0.82306 1.21563 1.21636 1.20744 1.21395 0.96209 0.88269 0.92710 1.21247 0.92444 0.98852 1.00475 1.20883 1.01011 0.89319 0.98424 1.20414 0.88834 0.89165 1.09325 1.98380 1.71608 1.35492 1.96841 0.87706 0.92123 0.92063 0.83116 0.76246 0.90914 0.91329 0.91793 0.92063 0.87492 0.96992 0.93702 0.96357 0.95699 0.84152 0.83423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 101.05 0.99 1.13 16 2 O -0.30 -2.88 9.94 -19.53 -0.19 -3.07 16 3 C 0.13 1.31 6.67 -39.25 -0.26 1.05 16 4 C -0.14 -1.48 8.58 -39.03 -0.33 -1.81 16 5 C -0.09 -0.93 5.87 -104.98 -0.62 -1.55 16 6 C 0.55 7.32 7.77 -12.35 -0.10 7.23 16 7 O -0.54 -8.82 16.34 5.32 0.09 -8.73 16 8 N -0.72 -8.70 5.38 -61.27 -0.33 -9.03 16 9 C 0.13 1.84 5.00 -4.04 -0.02 1.82 16 10 C -0.12 -1.82 2.98 -88.79 -0.26 -2.09 16 11 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 12 C -0.13 -2.41 6.54 -24.59 -0.16 -2.57 16 13 C 0.15 3.57 5.89 -2.53 -0.01 3.56 16 14 N -0.60 -15.10 3.40 -169.83 -0.58 -15.68 16 15 C -0.22 -6.14 10.28 -15.06 -0.15 -6.30 16 16 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 17 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 18 N -0.92 -26.58 10.09 55.49 0.56 -26.02 16 19 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 C 0.14 2.74 6.67 -2.90 -0.02 2.72 16 24 C -0.11 -0.97 9.54 -39.18 -0.37 -1.34 16 25 C -0.08 -0.64 9.81 -39.63 -0.39 -1.03 16 26 C -0.05 -0.48 6.34 -39.25 -0.25 -0.73 16 27 Cl -0.05 -0.49 28.49 -51.86 -1.48 -1.96 16 28 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 30 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 31 H 0.15 1.51 5.88 -52.49 -0.31 1.20 16 32 H 0.40 4.02 6.43 -40.82 -0.26 3.76 16 33 H 0.07 1.13 8.00 -51.93 -0.42 0.71 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 1.14 8.05 -51.93 -0.42 0.72 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.11 2.86 5.87 -51.93 -0.30 2.56 16 38 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.03 0.50 7.73 -51.93 -0.40 0.10 16 42 H 0.14 0.93 6.40 -52.49 -0.34 0.60 16 43 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 368.46 15.07 5.55 5.55 Total: -1.00 -32.57 368.46 -9.21 -41.77 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -5.75 Total: 0.66 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -2.06 Total: -0.33 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: -0.35 Total: -50.73 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: -0.11 Total: -11.80 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.48 Total: -1.96 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.57 -9.21 -41.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028844842.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.460 kcal (2) G-P(sol) polarization free energy of solvation -32.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds