Wall clock time and date at job start Tue Mar 31 2020 21:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35932 * 116.99966 * 2 1 4 4 C 1.38407 * 119.98970 * 0.02562 * 3 2 1 5 5 C 1.39549 * 119.80460 * 179.97438 * 4 3 2 6 6 C 1.47796 * 120.10197 * 179.97438 * 5 4 3 7 7 O 1.21557 * 120.00675 * 359.72769 * 6 5 4 8 8 N 1.34777 * 119.99783 * 179.97438 * 6 5 4 9 9 C 1.46506 * 120.00271 * 179.97438 * 8 6 5 10 10 C 1.52993 * 109.47563 * 180.02562 * 9 8 6 11 11 H 1.09001 * 110.64228 * 305.70564 * 10 9 8 12 12 C 1.55148 * 110.72211 * 182.56194 * 10 9 8 13 13 C 1.54912 * 101.58314 * 206.13857 * 12 10 9 14 14 N 1.47421 * 104.83210 * 37.00483 * 13 12 10 15 15 C 1.36940 * 125.64419 * 155.90627 * 14 13 12 16 16 H 1.08007 * 119.99365 * 179.97438 * 15 14 13 17 17 C 1.38810 * 120.00667 * 359.97438 * 15 14 13 18 18 N 1.31616 * 119.99390 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00170 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47202 * 90.00250 * 19 17 15 21 21 H 1.48503 * 109.46698 * 209.99932 * 19 17 15 22 22 H 1.48495 * 109.47451 * 329.99787 * 19 17 15 23 23 C 1.47318 * 108.73917 * 335.72203 * 14 13 12 24 24 C 1.39620 * 119.78855 * 0.24918 * 5 4 3 25 25 C 1.37929 * 119.97523 * 359.53704 * 24 5 4 26 26 C 1.38411 * 120.18839 * 0.44325 * 25 24 5 27 27 Cl 1.73607 * 119.89058 * 179.76417 * 26 25 24 28 28 H 1.08995 * 109.46797 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46467 * 299.99519 * 1 2 3 30 30 H 1.08992 * 109.47204 * 59.99405 * 1 2 3 31 31 H 1.07992 * 120.09511 * 0.02562 * 4 3 2 32 32 H 0.96999 * 120.00043 * 0.02562 * 8 6 5 33 33 H 1.08996 * 109.47365 * 300.00749 * 9 8 6 34 34 H 1.09000 * 109.46679 * 60.00307 * 9 8 6 35 35 H 1.08992 * 111.00654 * 324.20919 * 12 10 9 36 36 H 1.09003 * 111.00628 * 88.02950 * 12 10 9 37 37 H 1.09002 * 110.36987 * 155.84953 * 13 12 10 38 38 H 1.09007 * 110.36427 * 278.06105 * 13 12 10 39 39 H 0.97005 * 119.99972 * 179.97438 * 18 17 15 40 40 H 1.08999 * 110.06137 * 241.86876 * 23 14 13 41 41 H 1.08997 * 109.85447 * 120.60574 * 23 14 13 42 42 H 1.08001 * 120.01690 * 179.72691 * 24 5 4 43 43 H 1.07995 * 119.90675 * 180.18536 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 1.2921 2.3718 0.0005 5 6 1.9297 3.6131 0.0011 6 6 1.1309 4.8567 0.0011 7 8 -0.0833 4.7993 -0.0044 8 7 1.7488 6.0544 0.0021 9 6 0.9572 7.2872 0.0016 10 6 1.8952 8.4958 0.0023 11 1 2.6005 8.4343 0.8312 12 6 1.0865 9.8183 0.0666 13 6 2.0630 10.8132 -0.6090 14 7 2.7047 10.0389 -1.6870 15 6 3.2690 10.5634 -2.8192 16 1 3.7164 9.9087 -3.5525 17 6 3.2661 11.9362 -3.0243 18 7 2.7204 12.7338 -2.1308 19 14 4.0353 12.6514 -4.5690 20 1 3.0084 12.7398 -5.6381 21 1 4.5632 14.0083 -4.2764 22 1 5.1457 11.7750 -5.0205 23 6 2.6425 8.6077 -1.3433 24 6 3.3244 3.6766 -0.0042 25 6 4.0671 2.5143 -0.0003 26 6 3.4338 1.2836 -0.0003 27 17 4.3762 -0.1744 -0.0016 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 0.2136 2.3169 0.0014 32 1 2.7177 6.1003 0.0025 33 1 0.3294 7.3155 -0.8890 34 1 0.3275 7.3150 0.8909 35 1 0.1586 9.7367 -0.4992 36 1 0.8882 10.1052 1.0993 37 1 1.5156 11.6595 -1.0239 38 1 2.8084 11.1588 0.1074 39 1 2.7186 13.6933 -2.2739 40 1 3.6497 8.2033 -1.2428 41 1 2.0982 8.0647 -2.1159 42 1 3.8216 4.6353 -0.0083 43 1 5.1459 2.5647 -0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028844842.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:01 Heat of formation + Delta-G solvation = -47.637307 kcal Electronic energy + Delta-G solvation = -26037.335615 eV Core-core repulsion = 22108.662102 eV Total energy + Delta-G solvation = -3928.673513 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.67288 -40.56499 -39.25965 -38.38309 -37.38944 -36.14188 -34.36546 -32.42807 -31.68359 -31.20695 -29.82705 -28.34670 -27.29339 -25.70706 -24.36496 -23.34121 -22.23193 -21.53048 -21.16190 -19.71319 -18.82641 -17.85766 -17.67979 -17.38253 -17.04506 -16.88452 -16.67931 -16.48316 -15.95997 -15.57411 -15.25756 -14.96308 -14.77622 -14.47259 -14.25724 -14.14382 -13.60773 -13.51665 -13.37449 -13.13992 -12.94705 -12.81223 -12.66252 -12.57399 -12.47634 -12.14635 -12.00931 -11.90456 -11.89351 -11.81474 -11.57653 -11.37835 -11.08466 -10.72619 -10.24946 -10.01317 -9.38287 -8.86191 -7.76263 -5.19981 -0.50346 0.15294 1.04084 1.47459 1.48947 1.57430 1.63406 1.99262 2.17119 2.50537 2.60271 3.33483 3.50395 3.58552 3.66392 3.83015 3.85120 3.93708 4.01950 4.08180 4.21013 4.31666 4.33397 4.46873 4.58427 4.66497 4.68649 4.71595 4.76987 4.85782 4.93372 4.97239 5.06430 5.07937 5.15166 5.29174 5.39495 5.43410 5.49786 5.68401 5.84918 6.10750 6.33790 6.43771 7.07729 7.12913 7.80919 8.43983 9.25573 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.017700 B = 0.002142 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.515281 B =13066.707673 C =14003.439624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.317 6.317 3 C 0.122 3.878 4 C -0.148 4.148 5 C -0.100 4.100 6 C 0.556 3.444 7 O -0.575 6.575 8 N -0.706 5.706 9 C 0.143 3.857 10 C -0.094 4.094 11 H 0.100 0.900 12 C -0.122 4.122 13 C 0.151 3.849 14 N -0.629 5.629 15 C -0.237 4.237 16 H 0.080 0.920 17 C -0.069 4.069 18 N -0.949 5.949 19 Si 0.978 3.022 20 H -0.288 1.288 21 H -0.294 1.294 22 H -0.269 1.269 23 C 0.135 3.865 24 C -0.103 4.103 25 C -0.072 4.072 26 C -0.058 4.058 27 Cl -0.051 7.051 28 H 0.127 0.873 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.148 0.852 32 H 0.414 0.586 33 H 0.056 0.944 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.090 0.910 37 H 0.070 0.930 38 H -0.009 1.009 39 H 0.246 0.754 40 H 0.033 0.967 41 H 0.021 0.979 42 H 0.164 0.836 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.067 -25.506 8.323 26.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.230 6.230 3 C 0.076 3.924 4 C -0.168 4.168 5 C -0.103 4.103 6 C 0.344 3.656 7 O -0.456 6.456 8 N -0.358 5.358 9 C 0.019 3.981 10 C -0.113 4.113 11 H 0.118 0.882 12 C -0.162 4.162 13 C 0.026 3.974 14 N -0.355 5.355 15 C -0.366 4.366 16 H 0.098 0.902 17 C -0.261 4.261 18 N -0.599 5.599 19 Si 0.806 3.194 20 H -0.215 1.215 21 H -0.221 1.221 22 H -0.194 1.194 23 C 0.011 3.989 24 C -0.122 4.122 25 C -0.090 4.090 26 C -0.086 4.086 27 Cl -0.022 7.022 28 H 0.145 0.855 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.166 0.834 32 H 0.252 0.748 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.009 0.991 39 H 0.056 0.944 40 H 0.051 0.949 41 H 0.039 0.961 42 H 0.182 0.818 43 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -0.716 -25.669 8.217 26.961 hybrid contribution 0.521 0.821 -0.890 1.319 sum -0.194 -24.847 7.327 25.906 Atomic orbital electron populations 1.23414 0.76066 1.06042 1.02284 1.86150 1.23531 1.25127 1.88223 1.18631 0.90785 0.85356 0.97662 1.21314 1.01325 0.90299 1.03837 1.19786 0.94405 0.92361 1.03778 1.18420 0.87095 0.84098 0.75984 1.90757 1.15257 1.87875 1.51744 1.45862 1.11418 1.04932 1.73571 1.21277 0.93260 0.81355 1.02191 1.22298 0.97433 0.93808 0.97798 0.88212 1.22842 0.97846 0.94323 1.01142 1.21730 0.92821 0.94704 0.88135 1.44896 1.67872 1.02020 1.20727 1.19450 1.29376 0.91018 0.96749 0.90203 1.25615 1.02461 0.96456 1.01606 1.70053 1.50979 1.02648 1.36234 0.85080 0.78057 0.77351 0.78867 1.21459 1.22076 1.19427 1.21593 0.97433 0.85348 0.94563 1.21480 0.91449 1.00105 0.99141 1.21185 1.02274 0.88474 0.97109 1.20677 0.88878 0.89801 1.09250 1.98380 1.71419 1.35601 1.96817 0.85508 0.91763 0.91976 0.83417 0.74773 0.92599 0.90221 0.91975 0.89171 0.91246 0.99092 0.94400 0.94890 0.96068 0.81835 0.80848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.30 16 2 O -0.32 -5.72 9.94 -92.78 -0.92 -6.64 16 3 C 0.12 2.34 6.67 22.48 0.15 2.49 16 4 C -0.15 -2.98 8.58 22.63 0.19 -2.79 16 5 C -0.10 -2.02 5.87 -20.10 -0.12 -2.13 16 6 C 0.56 13.87 7.77 86.77 0.67 14.54 16 7 O -0.58 -18.55 16.34 -3.89 -0.06 -18.61 16 8 N -0.71 -15.45 5.38 -466.03 -2.51 -17.96 16 9 C 0.14 3.66 5.00 86.38 0.43 4.09 16 10 C -0.09 -2.74 2.98 -9.61 -0.03 -2.76 16 11 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 12 C -0.12 -4.20 6.54 31.98 0.21 -3.99 16 13 C 0.15 7.20 5.89 86.86 0.51 7.71 16 14 N -0.63 -31.39 3.40 -691.21 -2.35 -33.74 16 15 C -0.24 -13.08 10.28 84.03 0.86 -12.21 16 16 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 17 C -0.07 -3.88 5.49 84.86 0.47 -3.42 16 18 N -0.95 -56.15 10.09 21.65 0.22 -55.93 16 19 Si 0.98 45.29 29.55 68.60 2.03 47.32 16 20 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 21 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 23 C 0.14 5.08 6.67 86.67 0.58 5.65 16 24 C -0.10 -1.50 9.54 22.53 0.21 -1.29 16 25 C -0.07 -0.99 9.81 22.24 0.22 -0.77 16 26 C -0.06 -1.02 6.34 22.48 0.14 -0.88 16 27 Cl -0.05 -0.87 28.49 -2.72 -0.08 -0.95 16 28 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.06 0.69 7.66 -2.39 -0.02 0.67 16 30 H 0.06 0.70 7.66 -2.39 -0.02 0.68 16 31 H 0.15 2.97 5.88 -2.91 -0.02 2.95 16 32 H 0.41 6.90 6.43 -92.71 -0.60 6.31 16 33 H 0.06 1.66 8.00 -2.39 -0.02 1.64 16 34 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.06 2.15 8.05 -2.39 -0.02 2.13 16 36 H 0.09 2.58 8.14 -2.39 -0.02 2.57 16 37 H 0.07 3.84 5.87 -2.39 -0.01 3.83 16 38 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 39 H 0.25 14.17 8.31 -92.70 -0.77 13.40 16 40 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.02 0.82 7.73 -2.39 -0.02 0.80 16 42 H 0.16 1.54 6.40 -2.91 -0.02 1.53 16 43 H 0.17 1.44 8.06 -2.91 -0.02 1.42 16 Total: -1.00 -71.87 368.46 2.39 -69.48 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 0.45 Total: 11.48 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: 5.62 Total: 5.55 kcal Atomic # 7 Polarization: -102.98 SS G_CDS: -4.64 Total: -107.62 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.99 Total: -25.25 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -0.08 Total: -0.95 kcal Total: -71.87 2.39 -69.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028844842.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.839 kcal (2) G-P(sol) polarization free energy of solvation -71.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds