Wall clock time and date at job start Tue Mar 31 2020 21:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35710 * 117.00166 * 2 1 4 4 C 1.39062 * 119.89806 * 0.27382 * 3 2 1 5 5 C 1.37647 * 120.12477 * 180.23708 * 4 3 2 6 6 C 1.39779 * 119.92136 * 359.46398 * 5 4 3 7 7 C 1.47531 * 120.09885 * 180.30171 * 6 5 4 8 8 O 1.21601 * 119.99855 * 180.02562 * 7 6 5 9 9 N 1.34770 * 120.00021 * 0.02562 * 7 6 5 10 10 C 1.46502 * 120.00042 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47274 * 179.97438 * 10 9 7 12 12 H 1.09003 * 110.88572 * 51.11953 * 11 10 9 13 13 C 1.55156 * 111.00458 * 174.99834 * 11 10 9 14 14 C 1.54325 * 102.94034 * 153.57860 * 13 11 10 15 15 N 1.47024 * 107.27475 * 337.80875 * 14 13 11 16 16 C 1.36933 * 125.65325 * 178.92157 * 15 14 13 17 17 H 1.07999 * 120.00219 * 180.02562 * 16 15 14 18 18 C 1.38817 * 119.99739 * 0.02562 * 16 15 14 19 19 N 1.31612 * 119.99866 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99870 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47374 * 59.99654 * 20 18 16 22 22 H 1.48499 * 109.47137 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47217 * 299.99847 * 20 18 16 24 24 C 1.47428 * 108.69946 * 358.94073 * 15 14 13 25 25 C 1.39854 * 119.80322 * 0.28406 * 6 5 4 26 26 Cl 1.73604 * 120.06521 * 180.02562 * 25 6 5 27 27 C 1.37892 * 119.87239 * 359.97438 * 25 6 5 28 28 H 1.09005 * 109.46744 * 59.99651 * 1 2 3 29 29 H 1.08997 * 109.47076 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46669 * 300.00100 * 1 2 3 31 31 H 1.07998 * 119.94314 * 0.02562 * 4 3 2 32 32 H 1.08002 * 120.04271 * 179.74917 * 5 4 3 33 33 H 0.97005 * 119.99987 * 359.97438 * 9 7 6 34 34 H 1.09000 * 109.47357 * 300.00124 * 10 9 7 35 35 H 1.09006 * 109.47224 * 60.00411 * 10 9 7 36 36 H 1.08996 * 110.72203 * 271.93760 * 13 11 10 37 37 H 1.08995 * 110.71971 * 35.04465 * 13 11 10 38 38 H 1.08997 * 109.88399 * 97.22297 * 14 13 11 39 39 H 1.08998 * 109.88557 * 218.38978 * 14 13 11 40 40 H 0.97003 * 119.99893 * 180.02562 * 19 18 16 41 41 H 1.08997 * 110.36692 * 265.29171 * 24 15 14 42 42 H 1.08999 * 110.36937 * 142.96409 * 24 15 14 43 43 H 1.08002 * 119.96393 * 180.02562 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 1.2858 2.3741 0.0058 5 6 1.9058 3.6030 0.0009 6 6 3.3015 3.6798 0.0014 7 6 3.9702 4.9948 0.0029 8 8 5.1845 5.0595 0.0029 9 7 3.2352 6.1245 0.0042 10 6 3.8992 7.4304 0.0063 11 6 2.8445 8.5388 0.0068 12 1 2.1130 8.3787 0.7989 13 6 3.5064 9.9362 0.1353 14 6 2.4814 10.8680 -0.5450 15 7 1.6672 10.0382 -1.4451 16 6 0.6294 10.4828 -2.2200 17 1 0.0910 9.7906 -2.8503 18 6 0.2695 11.8233 -2.1953 19 7 0.9261 12.6669 -1.4275 20 14 -1.1466 12.4297 -3.2518 21 1 -2.3914 11.7169 -2.8677 22 1 -1.3278 13.8892 -3.0463 23 1 -0.8460 12.1653 -4.6818 24 6 2.1529 8.6480 -1.3750 25 6 4.0622 2.5062 0.0009 26 17 5.7961 2.5936 0.0023 27 6 3.4324 1.2795 0.0004 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5139 0.8900 31 1 0.2075 2.3146 0.0106 32 1 1.3147 4.5069 0.0013 33 1 2.2665 6.0729 0.0039 34 1 4.5216 7.5202 0.8966 35 1 4.5221 7.5227 -0.8835 36 1 3.6370 10.2063 1.1831 37 1 4.4613 9.9603 -0.3897 38 1 1.8449 11.3318 0.2084 39 1 3.0013 11.6359 -1.1178 40 1 0.6744 13.6035 -1.4100 41 1 2.8691 8.4556 -2.1738 42 1 1.3175 7.9506 -1.4372 43 1 4.0184 0.3723 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028872528.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:05 Heat of formation + Delta-G solvation = -19.877082 kcal Electronic energy + Delta-G solvation = -26147.267144 eV Core-core repulsion = 22219.797404 eV Total energy + Delta-G solvation = -3927.469739 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.82060 -39.64037 -37.93020 -37.32488 -36.41673 -34.66587 -32.62238 -31.59045 -30.75874 -29.69146 -28.38056 -27.74857 -25.56692 -24.10446 -23.45186 -22.53077 -20.75520 -19.99323 -19.82671 -18.85555 -17.71749 -16.99618 -16.76819 -16.30066 -15.77058 -15.54415 -15.31391 -14.89912 -14.60583 -14.42443 -14.39384 -13.82695 -13.61433 -13.48000 -13.01393 -12.90362 -12.62705 -12.34769 -12.15585 -11.99065 -11.76605 -11.56526 -11.38115 -11.24302 -11.22187 -10.91648 -10.79336 -10.35550 -10.16190 -9.99367 -9.87873 -9.66756 -9.51062 -9.28212 -9.00735 -8.66604 -8.60991 -6.84449 -5.72341 -3.05955 0.45993 0.73343 1.82618 2.65720 2.79356 3.18347 3.38848 3.43201 3.44682 3.48583 4.17216 4.43754 4.47930 4.54532 4.58271 4.67003 4.76164 4.89736 5.00511 5.10309 5.22992 5.30949 5.41873 5.51713 5.54501 5.67598 5.72319 5.75572 5.89723 5.93610 6.06316 6.07220 6.34936 6.43881 6.48607 6.53744 6.68431 6.77000 6.90745 7.52970 7.54534 7.62864 7.81652 8.24147 8.25184 9.20979 9.81449 10.47706 11.39347 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014031 B = 0.002459 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.170501 B =11383.359909 C =13032.932488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.310 6.310 3 C 0.164 3.836 4 C -0.214 4.214 5 C -0.031 4.031 6 C -0.165 4.165 7 C 0.553 3.447 8 O -0.521 6.521 9 N -0.720 5.720 10 C 0.134 3.866 11 C -0.118 4.118 12 H 0.079 0.921 13 C -0.135 4.135 14 C 0.177 3.823 15 N -0.606 5.606 16 C -0.230 4.230 17 H 0.076 0.924 18 C -0.008 4.008 19 N -0.922 5.922 20 Si 0.912 3.088 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.142 3.858 25 C 0.053 3.947 26 Cl -0.021 7.021 27 C -0.158 4.158 28 H 0.061 0.939 29 H 0.104 0.896 30 H 0.060 0.940 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.398 0.602 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.046 0.954 39 H 0.043 0.957 40 H 0.253 0.747 41 H 0.020 0.980 42 H 0.034 0.966 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.233 -24.750 5.889 25.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.223 6.223 3 C 0.117 3.883 4 C -0.232 4.232 5 C -0.050 4.050 6 C -0.170 4.170 7 C 0.340 3.660 8 O -0.398 6.398 9 N -0.373 5.373 10 C 0.011 3.989 11 C -0.138 4.138 12 H 0.097 0.903 13 C -0.174 4.174 14 C 0.053 3.947 15 N -0.333 5.333 16 C -0.358 4.358 17 H 0.094 0.906 18 C -0.205 4.205 19 N -0.569 5.569 20 Si 0.742 3.258 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.016 3.984 25 C 0.025 3.975 26 Cl 0.009 6.991 27 C -0.178 4.178 28 H 0.079 0.921 29 H 0.122 0.878 30 H 0.079 0.921 31 H 0.159 0.841 32 H 0.159 0.841 33 H 0.233 0.767 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.037 0.963 42 H 0.053 0.947 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.247 -24.635 5.841 25.418 hybrid contribution -1.482 0.510 -0.577 1.670 sum 0.765 -24.125 5.264 24.704 Atomic orbital electron populations 1.23190 0.77475 1.04519 1.01943 1.86051 1.22100 1.26405 1.87742 1.19009 0.91630 0.84556 0.93123 1.21281 1.00843 0.91790 1.09326 1.21122 0.92555 0.98086 0.93237 1.19745 0.93434 0.93295 1.10483 1.17924 0.87097 0.83626 0.77374 1.90870 1.12842 1.87164 1.48956 1.45980 1.10267 1.05945 1.75058 1.21418 0.95134 0.80133 1.02226 1.22621 0.96998 0.94269 0.99882 0.90268 1.22854 0.99505 0.94498 1.00504 1.21146 0.90196 0.90954 0.92441 1.44475 1.36614 1.02226 1.49961 1.19002 1.06420 0.92677 1.17727 0.90565 1.24806 0.99660 0.96046 0.99944 1.69953 1.42099 1.03105 1.41783 0.86202 0.81889 0.77713 0.79956 1.21196 1.21589 1.21177 1.21582 0.95520 0.88429 0.92875 1.20643 0.86860 0.92613 0.97404 1.98433 1.06383 1.98492 1.95805 1.20165 0.91740 0.97390 1.08484 0.92053 0.87785 0.92101 0.84124 0.84140 0.76657 0.91478 0.91149 0.91982 0.92151 0.93568 0.93901 0.93686 0.96257 0.94749 0.83529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 101.05 0.99 1.09 16 2 O -0.31 -2.44 10.48 -18.84 -0.20 -2.63 16 3 C 0.16 1.44 6.69 -39.03 -0.26 1.18 16 4 C -0.21 -1.66 9.01 -39.49 -0.36 -2.02 16 5 C -0.03 -0.28 9.53 -39.22 -0.37 -0.65 16 6 C -0.17 -1.93 5.88 -104.93 -0.62 -2.55 16 7 C 0.55 7.70 7.76 -12.47 -0.10 7.60 16 8 O -0.52 -8.79 13.96 5.28 0.07 -8.72 16 9 N -0.72 -9.13 5.45 -61.35 -0.33 -9.46 16 10 C 0.13 1.91 5.13 -4.04 -0.02 1.89 16 11 C -0.12 -1.91 3.05 -88.47 -0.27 -2.18 16 12 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 13 C -0.13 -2.42 6.42 -24.90 -0.16 -2.58 16 14 C 0.18 4.24 5.37 -3.06 -0.02 4.22 16 15 N -0.61 -15.23 3.39 -170.07 -0.58 -15.80 16 16 C -0.23 -6.34 10.28 -15.06 -0.15 -6.50 16 17 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 18 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 19 N -0.92 -26.96 10.31 55.49 0.57 -26.39 16 20 Si 0.91 21.89 29.55 -169.99 -5.02 16.87 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 C 0.14 2.80 6.65 -2.53 -0.02 2.78 16 25 C 0.05 0.62 6.35 -39.10 -0.25 0.37 16 26 Cl -0.02 -0.26 26.01 -51.86 -1.35 -1.61 16 27 C -0.16 -1.54 9.75 -39.46 -0.38 -1.92 16 28 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 29 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.20 7.64 -51.93 -0.40 -0.20 16 31 H 0.14 0.73 6.27 -52.49 -0.33 0.40 16 32 H 0.14 0.97 6.39 -52.49 -0.34 0.63 16 33 H 0.40 4.20 6.49 -40.82 -0.27 3.93 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.07 1.09 7.96 -51.93 -0.41 0.67 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.06 1.04 8.04 -51.93 -0.42 0.62 16 38 H 0.05 1.22 7.38 -51.93 -0.38 0.83 16 39 H 0.04 1.14 7.50 -51.93 -0.39 0.75 16 40 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.02 0.40 7.90 -51.93 -0.41 -0.01 16 42 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 365.80 15.07 5.51 5.51 Total: -1.00 -33.24 365.80 -9.22 -42.46 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -5.82 Total: -0.64 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -2.08 Total: 0.41 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: -0.34 Total: -51.66 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: -0.12 Total: -11.35 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -1.35 Total: -1.61 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.24 -9.22 -42.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028872528.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.586 kcal (2) G-P(sol) polarization free energy of solvation -33.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds