Wall clock time and date at job start Tue Mar 31 2020 21:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35710 * 117.00166 * 2 1 4 4 C 1.39062 * 119.89806 * 0.27382 * 3 2 1 5 5 C 1.37647 * 120.12477 * 180.23708 * 4 3 2 6 6 C 1.39779 * 119.92136 * 359.46398 * 5 4 3 7 7 C 1.47531 * 120.09885 * 180.30171 * 6 5 4 8 8 O 1.21601 * 119.99855 * 180.02562 * 7 6 5 9 9 N 1.34770 * 120.00021 * 0.02562 * 7 6 5 10 10 C 1.46502 * 120.00042 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47274 * 179.97438 * 10 9 7 12 12 H 1.09003 * 110.88572 * 51.11953 * 11 10 9 13 13 C 1.55156 * 111.00458 * 174.99834 * 11 10 9 14 14 C 1.54325 * 102.94034 * 153.57860 * 13 11 10 15 15 N 1.47024 * 107.27475 * 337.80875 * 14 13 11 16 16 C 1.36933 * 125.65325 * 178.92157 * 15 14 13 17 17 H 1.07999 * 120.00219 * 180.02562 * 16 15 14 18 18 C 1.38817 * 119.99739 * 0.02562 * 16 15 14 19 19 N 1.31612 * 119.99866 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99870 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47374 * 59.99654 * 20 18 16 22 22 H 1.48499 * 109.47137 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47217 * 299.99847 * 20 18 16 24 24 C 1.47428 * 108.69946 * 358.94073 * 15 14 13 25 25 C 1.39854 * 119.80322 * 0.28406 * 6 5 4 26 26 Cl 1.73604 * 120.06521 * 180.02562 * 25 6 5 27 27 C 1.37892 * 119.87239 * 359.97438 * 25 6 5 28 28 H 1.09005 * 109.46744 * 59.99651 * 1 2 3 29 29 H 1.08997 * 109.47076 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46669 * 300.00100 * 1 2 3 31 31 H 1.07998 * 119.94314 * 0.02562 * 4 3 2 32 32 H 1.08002 * 120.04271 * 179.74917 * 5 4 3 33 33 H 0.97005 * 119.99987 * 359.97438 * 9 7 6 34 34 H 1.09000 * 109.47357 * 300.00124 * 10 9 7 35 35 H 1.09006 * 109.47224 * 60.00411 * 10 9 7 36 36 H 1.08996 * 110.72203 * 271.93760 * 13 11 10 37 37 H 1.08995 * 110.71971 * 35.04465 * 13 11 10 38 38 H 1.08997 * 109.88399 * 97.22297 * 14 13 11 39 39 H 1.08998 * 109.88557 * 218.38978 * 14 13 11 40 40 H 0.97003 * 119.99893 * 180.02562 * 19 18 16 41 41 H 1.08997 * 110.36692 * 265.29171 * 24 15 14 42 42 H 1.08999 * 110.36937 * 142.96409 * 24 15 14 43 43 H 1.08002 * 119.96393 * 180.02562 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 1.2858 2.3741 0.0058 5 6 1.9058 3.6030 0.0009 6 6 3.3015 3.6798 0.0014 7 6 3.9702 4.9948 0.0029 8 8 5.1845 5.0595 0.0029 9 7 3.2352 6.1245 0.0042 10 6 3.8992 7.4304 0.0063 11 6 2.8445 8.5388 0.0068 12 1 2.1130 8.3787 0.7989 13 6 3.5064 9.9362 0.1353 14 6 2.4814 10.8680 -0.5450 15 7 1.6672 10.0382 -1.4451 16 6 0.6294 10.4828 -2.2200 17 1 0.0910 9.7906 -2.8503 18 6 0.2695 11.8233 -2.1953 19 7 0.9261 12.6669 -1.4275 20 14 -1.1466 12.4297 -3.2518 21 1 -2.3914 11.7169 -2.8677 22 1 -1.3278 13.8892 -3.0463 23 1 -0.8460 12.1653 -4.6818 24 6 2.1529 8.6480 -1.3750 25 6 4.0622 2.5062 0.0009 26 17 5.7961 2.5936 0.0023 27 6 3.4324 1.2795 0.0004 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5139 0.8900 31 1 0.2075 2.3146 0.0106 32 1 1.3147 4.5069 0.0013 33 1 2.2665 6.0729 0.0039 34 1 4.5216 7.5202 0.8966 35 1 4.5221 7.5227 -0.8835 36 1 3.6370 10.2063 1.1831 37 1 4.4613 9.9603 -0.3897 38 1 1.8449 11.3318 0.2084 39 1 3.0013 11.6359 -1.1178 40 1 0.6744 13.6035 -1.4100 41 1 2.8691 8.4556 -2.1738 42 1 1.3175 7.9506 -1.4372 43 1 4.0184 0.3723 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028872528.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:04 Heat of formation + Delta-G solvation = -41.153790 kcal Electronic energy + Delta-G solvation = -26148.189771 eV Core-core repulsion = 22219.797404 eV Total energy + Delta-G solvation = -3928.392367 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.56126 -40.55246 -39.29561 -38.30489 -37.24283 -36.01433 -34.33672 -32.46859 -31.70842 -31.19778 -29.80324 -28.33635 -27.21721 -25.47025 -24.38535 -23.37539 -22.08155 -21.55317 -21.13126 -19.55981 -18.91180 -18.42473 -17.76292 -16.99920 -16.79037 -16.62553 -16.37146 -16.22497 -15.95851 -15.68208 -15.29385 -15.00056 -14.72990 -14.47142 -14.12904 -13.90553 -13.81814 -13.76354 -13.38464 -13.10154 -12.99226 -12.76709 -12.74639 -12.58994 -12.32841 -12.05645 -11.98974 -11.88021 -11.83373 -11.76851 -11.51860 -11.43601 -10.68155 -10.59689 -10.08581 -10.01277 -9.39694 -8.87816 -7.83072 -5.18511 -0.31832 0.04460 1.02320 1.46998 1.50317 1.56539 1.79181 2.11833 2.31441 2.51269 2.64384 3.35170 3.53533 3.63955 3.67314 3.84044 3.88748 4.00406 4.05462 4.07114 4.18610 4.39211 4.43759 4.47605 4.62788 4.64842 4.71574 4.79541 4.81670 4.87870 4.95472 5.02319 5.07175 5.09991 5.10758 5.29780 5.37195 5.47524 5.50728 5.70041 5.80158 6.22058 6.22446 6.55089 7.12247 7.23443 7.80400 8.44923 9.27358 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014031 B = 0.002459 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.170501 B =11383.359909 C =13032.932488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.322 6.322 3 C 0.168 3.832 4 C -0.206 4.206 5 C -0.025 4.025 6 C -0.187 4.187 7 C 0.552 3.448 8 O -0.558 6.558 9 N -0.712 5.712 10 C 0.147 3.853 11 C -0.094 4.094 12 H 0.093 0.907 13 C -0.123 4.123 14 C 0.183 3.817 15 N -0.629 5.629 16 C -0.242 4.242 17 H 0.085 0.915 18 C -0.069 4.069 19 N -0.953 5.953 20 Si 0.978 3.022 21 H -0.273 1.273 22 H -0.297 1.297 23 H -0.279 1.279 24 C 0.138 3.862 25 C 0.039 3.961 26 Cl -0.042 7.042 27 C -0.166 4.166 28 H 0.072 0.928 29 H 0.121 0.879 30 H 0.073 0.927 31 H 0.173 0.827 32 H 0.163 0.837 33 H 0.410 0.590 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.013 0.987 39 H 0.002 0.998 40 H 0.246 0.754 41 H 0.016 0.984 42 H 0.051 0.949 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.786 -26.896 6.113 27.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.235 6.235 3 C 0.120 3.880 4 C -0.224 4.224 5 C -0.044 4.044 6 C -0.191 4.191 7 C 0.340 3.660 8 O -0.437 6.437 9 N -0.365 5.365 10 C 0.023 3.977 11 C -0.114 4.114 12 H 0.111 0.889 13 C -0.162 4.162 14 C 0.058 3.942 15 N -0.355 5.355 16 C -0.371 4.371 17 H 0.102 0.898 18 C -0.262 4.262 19 N -0.602 5.602 20 Si 0.806 3.194 21 H -0.199 1.199 22 H -0.223 1.223 23 H -0.205 1.205 24 C 0.013 3.987 25 C 0.011 3.989 26 Cl -0.013 7.013 27 C -0.185 4.185 28 H 0.090 0.910 29 H 0.140 0.860 30 H 0.092 0.908 31 H 0.190 0.810 32 H 0.181 0.819 33 H 0.248 0.752 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.032 0.968 39 H 0.020 0.980 40 H 0.055 0.945 41 H 0.034 0.966 42 H 0.070 0.930 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.200 -26.833 6.063 27.510 hybrid contribution -0.939 1.049 -0.670 1.559 sum -0.739 -25.784 5.393 26.352 Atomic orbital electron populations 1.23528 0.75382 1.06216 1.03073 1.86054 1.24252 1.25936 1.87260 1.19117 0.91385 0.85445 0.92021 1.21608 1.02349 0.90782 1.07666 1.21367 0.91383 0.99542 0.92074 1.19671 0.94624 0.91929 1.12873 1.18268 0.86766 0.84483 0.76475 1.90851 1.14438 1.87712 1.50706 1.45826 1.10848 1.05098 1.74719 1.21153 0.94274 0.80183 1.02101 1.22417 0.97148 0.93799 0.98030 0.88909 1.22718 0.98084 0.94131 1.01278 1.20911 0.90518 0.91498 0.91272 1.44805 1.36323 1.04661 1.49729 1.19448 1.06863 0.93064 1.17724 0.89765 1.25670 1.02451 0.96426 1.01608 1.70187 1.43695 1.02856 1.43478 0.85156 0.79221 0.76581 0.78399 1.19873 1.22316 1.20522 1.21771 0.96166 0.86029 0.94761 1.20767 0.85927 0.93468 0.98725 1.98418 1.08247 1.98563 1.96041 1.20264 0.92642 0.97011 1.08585 0.90966 0.86050 0.90797 0.80993 0.81936 0.75227 0.90709 0.92320 0.89619 0.91227 0.96838 0.97976 0.94489 0.96603 0.93047 0.82841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.81 113.37 1.11 1.17 16 2 O -0.32 -4.19 10.48 -90.31 -0.95 -5.13 16 3 C 0.17 2.53 6.69 22.63 0.15 2.69 16 4 C -0.21 -2.48 9.01 22.33 0.20 -2.28 16 5 C -0.02 -0.37 9.53 22.50 0.21 -0.16 16 6 C -0.19 -4.09 5.88 -20.06 -0.12 -4.21 16 7 C 0.55 14.72 7.76 86.70 0.67 15.39 16 8 O -0.56 -18.69 13.96 -4.03 -0.06 -18.74 16 9 N -0.71 -16.47 5.45 -466.26 -2.54 -19.01 16 10 C 0.15 3.88 5.13 86.38 0.44 4.32 16 11 C -0.09 -2.85 3.05 -9.40 -0.03 -2.88 16 12 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 13 C -0.12 -4.30 6.42 31.78 0.20 -4.10 16 14 C 0.18 8.95 5.37 86.73 0.47 9.41 16 15 N -0.63 -31.61 3.39 -691.98 -2.35 -33.96 16 16 C -0.24 -13.35 10.28 84.04 0.86 -12.48 16 17 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 18 C -0.07 -3.89 5.49 84.86 0.47 -3.43 16 19 N -0.95 -57.43 10.31 21.65 0.22 -57.20 16 20 Si 0.98 45.24 29.55 68.60 2.03 47.27 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 22 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 24 C 0.14 5.21 6.65 86.85 0.58 5.79 16 25 C 0.04 0.89 6.35 22.58 0.14 1.03 16 26 Cl -0.04 -1.09 26.01 -2.72 -0.07 -1.16 16 27 C -0.17 -3.03 9.75 22.35 0.22 -2.81 16 28 H 0.07 0.21 7.66 -2.38 -0.02 0.19 16 29 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.07 0.18 7.64 -2.39 -0.02 0.16 16 31 H 0.17 0.95 6.27 -2.91 -0.02 0.93 16 32 H 0.16 1.60 6.39 -2.91 -0.02 1.58 16 33 H 0.41 7.36 6.49 -92.70 -0.60 6.76 16 34 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.06 1.73 7.96 -2.38 -0.02 1.71 16 36 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 37 H 0.07 2.31 8.04 -2.39 -0.02 2.29 16 38 H 0.01 0.73 7.38 -2.39 -0.02 0.71 16 39 H 0.00 0.11 7.50 -2.39 -0.02 0.09 16 40 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 41 H 0.02 0.63 7.90 -2.39 -0.02 0.61 16 42 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -74.54 365.80 2.31 -72.23 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: 0.44 Total: 8.25 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 5.59 Total: 7.47 kcal Atomic # 7 Polarization: -105.50 SS G_CDS: -4.67 Total: -110.17 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -1.00 Total: -23.88 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -0.07 Total: -1.16 kcal Total: -74.54 2.31 -72.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028872528.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.074 kcal (2) G-P(sol) polarization free energy of solvation -74.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds