Wall clock time and date at job start Tue Mar 31 2020 21:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35917 * 116.99865 * 2 1 4 4 C 1.38830 * 119.97216 * 0.02562 * 3 2 1 5 5 C 1.38354 * 120.22622 * 180.02562 * 4 3 2 6 6 Cl 1.73598 * 119.91583 * 180.02562 * 5 4 3 7 7 C 1.38138 * 120.17558 * 359.70434 * 5 4 3 8 8 C 1.39548 * 119.95303 * 0.55578 * 7 5 4 9 9 C 1.47861 * 120.11215 * 179.74210 * 8 7 5 10 10 O 1.21555 * 119.99528 * 179.72112 * 9 8 7 11 11 N 1.34772 * 120.00122 * 359.72140 * 9 8 7 12 12 C 1.46494 * 119.99954 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47464 * 180.02562 * 12 11 9 14 14 H 1.09003 * 110.88352 * 308.88353 * 13 12 11 15 15 C 1.55153 * 111.00844 * 185.00091 * 13 12 11 16 16 C 1.54323 * 103.10236 * 206.29737 * 15 13 12 17 17 N 1.47486 * 107.03754 * 22.24109 * 16 15 13 18 18 C 1.36936 * 125.59370 * 181.08954 * 17 16 15 19 19 H 1.08000 * 119.99616 * 179.97438 * 18 17 16 20 20 C 1.38811 * 120.00068 * 359.92625 * 18 17 16 21 21 N 1.31617 * 119.99946 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99992 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47153 * 59.99850 * 22 20 18 24 24 H 1.48504 * 109.47190 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47229 * 300.00232 * 22 20 18 26 26 C 1.47428 * 108.75727 * 1.02624 * 17 16 15 27 27 C 1.38456 * 119.97778 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.46324 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47223 * 300.00055 * 1 2 3 30 30 H 1.09001 * 109.46865 * 60.00969 * 1 2 3 31 31 H 1.08001 * 119.89025 * 359.97438 * 4 3 2 32 32 H 1.08002 * 120.02212 * 180.26821 * 7 5 4 33 33 H 0.97002 * 120.00061 * 0.02562 * 11 9 8 34 34 H 1.09004 * 109.47248 * 59.99837 * 12 11 9 35 35 H 1.09004 * 109.47668 * 300.00070 * 12 11 9 36 36 H 1.09002 * 110.72030 * 324.75004 * 15 13 12 37 37 H 1.09003 * 110.72184 * 87.84655 * 15 13 12 38 38 H 1.09000 * 109.88693 * 141.69901 * 16 15 13 39 39 H 1.09005 * 109.88012 * 262.86516 * 16 15 13 40 40 H 0.97002 * 119.99700 * 180.02562 * 21 20 18 41 41 H 1.09000 * 110.36462 * 217.05803 * 26 17 16 42 42 H 1.08998 * 110.36847 * 94.73011 * 26 17 16 43 43 H 1.08002 * 120.09459 * 0.04004 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2893 2.3750 0.0005 5 6 1.9119 3.6105 0.0000 6 17 0.9578 5.0608 0.0014 7 6 3.2908 3.6932 0.0051 8 6 4.0587 2.5280 -0.0009 9 6 5.5349 2.6124 -0.0013 10 8 6.2017 1.5961 -0.0014 11 7 6.1410 3.8162 -0.0014 12 6 7.6036 3.8998 -0.0012 13 6 8.0305 5.3690 -0.0008 14 1 7.5251 5.9207 -0.7935 15 6 9.5713 5.5005 -0.1268 16 6 9.8632 6.8561 0.5506 17 7 8.7311 7.1416 1.4517 18 6 8.5915 8.2627 2.2255 19 1 7.7215 8.3795 2.8548 20 6 9.5685 9.2484 2.2020 21 7 10.6289 9.1058 1.4354 22 14 9.3783 10.7774 3.2582 23 1 9.2994 10.3845 4.6881 24 1 10.5478 11.6693 3.0531 25 1 8.1362 11.4940 2.8725 26 6 7.7745 6.0221 1.3805 27 6 3.4287 1.2830 -0.0005 28 1 -0.3632 -1.0278 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 0.2109 2.3158 0.0005 32 1 3.7742 4.6590 0.0090 33 1 5.6089 4.6272 -0.0009 34 1 7.9958 3.4073 -0.8910 35 1 7.9956 3.4077 0.8890 36 1 10.0721 4.6895 0.4019 37 1 9.8724 5.5201 -1.1742 38 1 10.7889 6.7930 1.1226 39 1 9.9442 7.6380 -0.2046 40 1 11.3118 9.7945 1.4193 41 1 6.7514 6.3929 1.4409 42 1 7.9675 5.3067 2.1799 43 1 4.0181 0.3780 -0.0016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028884423.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:13 Heat of formation + Delta-G solvation = -29.064745 kcal Electronic energy + Delta-G solvation = -25983.355468 eV Core-core repulsion = 22055.487322 eV Total energy + Delta-G solvation = -3927.868146 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.87336 -39.67888 -37.96967 -37.55863 -36.56684 -34.78759 -32.61800 -31.52409 -30.89980 -29.67264 -28.26903 -27.81328 -25.72541 -24.32946 -23.12370 -22.83669 -20.81106 -20.01255 -19.93334 -18.80892 -17.19099 -16.83823 -16.69270 -16.48017 -16.27871 -15.85087 -15.46432 -15.02861 -14.71319 -14.51386 -14.21945 -13.93818 -13.71980 -13.54276 -13.06416 -12.82996 -12.47552 -12.36212 -12.32696 -12.03195 -11.76230 -11.67826 -11.44244 -11.40802 -11.20581 -10.91302 -10.78491 -10.47206 -10.21487 -10.08770 -9.92020 -9.83171 -9.65342 -9.41074 -9.02975 -8.76305 -8.60540 -6.84076 -5.71463 -3.05017 0.31178 0.75953 1.63368 2.52759 2.62603 3.15181 3.40298 3.41161 3.44591 3.45854 4.21587 4.37325 4.49036 4.53659 4.61757 4.66957 4.74322 4.84333 4.97872 5.05186 5.12829 5.20024 5.40480 5.53857 5.57757 5.63535 5.66520 5.78278 5.87389 5.93439 6.02702 6.03893 6.32751 6.35160 6.48621 6.52083 6.66254 6.79173 6.89407 7.40947 7.55178 7.62254 7.82031 8.07428 8.25034 9.21195 9.81951 10.47990 11.40310 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014959 B = 0.002393 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.380828 B =11697.087185 C =13182.597205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.309 6.309 3 C 0.134 3.866 4 C -0.181 4.181 5 C -0.002 4.002 6 Cl -0.056 7.056 7 C -0.115 4.115 8 C -0.077 4.077 9 C 0.558 3.442 10 O -0.533 6.533 11 N -0.715 5.715 12 C 0.132 3.868 13 C -0.118 4.118 14 H 0.080 0.920 15 C -0.135 4.135 16 C 0.178 3.822 17 N -0.607 5.607 18 C -0.229 4.229 19 H 0.077 0.923 20 C -0.009 4.009 21 N -0.922 5.922 22 Si 0.912 3.088 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.142 3.858 27 C -0.089 4.089 28 H 0.104 0.896 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.402 0.598 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.044 0.956 39 H 0.047 0.953 40 H 0.253 0.747 41 H 0.035 0.965 42 H 0.020 0.980 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.949 -15.793 -5.895 26.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.222 6.222 3 C 0.088 3.912 4 C -0.201 4.201 5 C -0.029 4.029 6 Cl -0.027 7.027 7 C -0.134 4.134 8 C -0.081 4.081 9 C 0.344 3.656 10 O -0.410 6.410 11 N -0.366 5.366 12 C 0.008 3.992 13 C -0.138 4.138 14 H 0.099 0.901 15 C -0.174 4.174 16 C 0.053 3.947 17 N -0.333 5.333 18 C -0.358 4.358 19 H 0.094 0.906 20 C -0.205 4.205 21 N -0.570 5.570 22 Si 0.742 3.258 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.016 3.984 27 C -0.108 4.108 28 H 0.123 0.877 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.161 0.839 32 H 0.160 0.840 33 H 0.238 0.762 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.054 0.946 42 H 0.037 0.963 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -20.305 -16.356 -5.847 26.721 hybrid contribution -0.736 1.617 0.574 1.867 sum -21.041 -14.739 -5.273 26.225 Atomic orbital electron populations 1.23159 0.77837 1.04507 1.01647 1.86143 1.21780 1.25765 1.88480 1.18654 0.91793 0.84145 0.96583 1.21252 1.01013 0.90573 1.07259 1.20467 0.91599 0.87795 1.02992 1.98406 1.71712 1.35858 1.96739 1.21172 0.91742 0.98991 1.01521 1.19682 0.93482 0.92679 1.02231 1.17983 0.86608 0.83934 0.77111 1.90795 1.65736 1.34829 1.49684 1.46008 1.08728 1.07855 1.74039 1.21486 0.77956 0.97305 1.02404 1.22630 0.98143 0.93018 1.00041 0.90143 1.22857 0.93212 1.00772 1.00532 1.21232 0.90834 0.90198 0.92436 1.44583 1.20311 1.18342 1.50098 1.19006 1.04622 0.94377 1.17749 0.90553 1.24803 0.96891 0.98824 0.99971 1.69949 1.10618 1.34554 1.41853 0.86200 0.76899 0.82707 0.79946 1.21179 1.21602 1.21191 1.21585 0.93716 0.90359 0.92789 1.20579 0.91253 0.98613 1.00372 0.87740 0.92293 0.92315 0.83930 0.84007 0.76214 0.91263 0.90945 0.92152 0.91951 0.93808 0.93504 0.93699 0.94644 0.96250 0.83026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 101.05 0.99 1.10 16 2 O -0.31 -2.64 10.49 -19.48 -0.20 -2.84 16 3 C 0.13 1.25 6.68 -39.28 -0.26 0.99 16 4 C -0.18 -1.50 8.81 -39.32 -0.35 -1.84 16 5 C 0.00 -0.02 6.31 -39.58 -0.25 -0.26 16 6 Cl -0.06 -0.49 28.95 -51.86 -1.50 -2.00 16 7 C -0.11 -1.11 9.32 -39.13 -0.36 -1.48 16 8 C -0.08 -0.86 5.87 -104.99 -0.62 -1.48 16 9 C 0.56 7.48 7.77 -12.32 -0.10 7.38 16 10 O -0.53 -8.83 16.35 5.32 0.09 -8.74 16 11 N -0.72 -8.89 5.45 -61.25 -0.33 -9.23 16 12 C 0.13 1.83 5.13 -4.04 -0.02 1.81 16 13 C -0.12 -1.90 3.05 -88.47 -0.27 -2.17 16 14 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 15 C -0.13 -2.40 6.41 -24.90 -0.16 -2.56 16 16 C 0.18 4.23 5.39 -2.81 -0.02 4.22 16 17 N -0.61 -15.25 3.41 -169.69 -0.58 -15.83 16 18 C -0.23 -6.34 10.28 -15.06 -0.15 -6.50 16 19 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 20 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 21 N -0.92 -27.00 10.31 55.49 0.57 -26.43 16 22 Si 0.91 22.04 29.55 -169.99 -5.02 17.01 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 C 0.14 2.79 6.65 -2.52 -0.02 2.78 16 27 C -0.09 -0.96 9.53 -39.02 -0.37 -1.33 16 28 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.21 7.65 -51.93 -0.40 -0.18 16 30 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 31 H 0.14 0.85 6.28 -52.49 -0.33 0.52 16 32 H 0.14 1.20 6.40 -52.49 -0.34 0.86 16 33 H 0.40 4.28 6.50 -40.82 -0.27 4.01 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 1.08 7.96 -51.93 -0.41 0.67 16 36 H 0.06 1.02 8.04 -51.93 -0.42 0.60 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.04 1.16 7.51 -51.93 -0.39 0.77 16 39 H 0.05 1.23 7.39 -51.93 -0.38 0.85 16 40 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.02 0.40 7.91 -51.93 -0.41 -0.01 16 43 H 0.15 1.69 7.65 -52.49 -0.40 1.28 16 LS Contribution 370.14 15.07 5.58 5.58 Total: -1.00 -32.67 370.14 -9.25 -41.93 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -5.80 Total: 0.24 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -2.05 Total: 0.31 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: -0.34 Total: -51.48 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -0.12 Total: -11.58 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.50 Total: -2.00 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.67 -9.25 -41.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028884423.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.861 kcal (2) G-P(sol) polarization free energy of solvation -32.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds