Wall clock time and date at job start Tue Mar 31 2020 21:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35674 * 117.00105 * 2 1 4 4 C 1.38698 * 120.13478 * 0.02562 * 3 2 1 5 5 C 1.38049 * 120.09990 * 179.97438 * 4 3 2 6 6 C 1.38649 * 120.37741 * 0.02562 * 5 4 3 7 7 Cl 1.73605 * 119.86434 * 180.02562 * 6 5 4 8 8 C 1.37895 * 120.27321 * 359.71851 * 6 5 4 9 9 C 1.39715 * 119.88791 * 0.53973 * 8 6 5 10 10 C 1.47543 * 120.17960 * 179.74013 * 9 8 6 11 11 O 1.21587 * 119.99776 * 179.72418 * 10 9 8 12 12 N 1.34775 * 120.00138 * 359.72190 * 10 9 8 13 13 C 1.46497 * 119.99944 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.47114 * 180.02562 * 13 12 10 15 15 H 1.08997 * 110.92180 * 57.44684 * 14 13 12 16 16 C 1.55155 * 111.00532 * 181.35298 * 14 13 12 17 17 C 1.54327 * 102.94571 * 153.57522 * 16 14 13 18 18 N 1.47024 * 107.26774 * 337.80617 * 17 16 14 19 19 C 1.36941 * 125.64618 * 179.20447 * 18 17 16 20 20 H 1.08005 * 119.99780 * 179.68989 * 19 18 17 21 21 C 1.38813 * 119.99913 * 359.69358 * 19 18 17 22 22 N 1.31616 * 119.99926 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99719 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47341 * 89.99896 * 23 21 19 25 25 H 1.48503 * 109.46756 * 209.99724 * 23 21 19 26 26 H 1.48496 * 109.46957 * 329.99498 * 23 21 19 27 27 C 1.47426 * 108.70449 * 358.94057 * 18 17 16 28 28 H 1.09003 * 109.47271 * 60.00349 * 1 2 3 29 29 H 1.09003 * 109.46967 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47674 * 300.00053 * 1 2 3 31 31 H 1.08006 * 119.95120 * 359.97438 * 4 3 2 32 32 H 1.07998 * 119.81444 * 179.97438 * 5 4 3 33 33 H 1.07994 * 120.05537 * 180.27941 * 8 6 5 34 34 H 0.97000 * 120.00160 * 0.02562 * 12 10 9 35 35 H 1.09002 * 109.46937 * 60.00106 * 13 12 10 36 36 H 1.09002 * 109.47231 * 300.00009 * 13 12 10 37 37 H 1.08999 * 110.71965 * 271.93488 * 16 14 13 38 38 H 1.09000 * 110.72417 * 35.03508 * 16 14 13 39 39 H 1.08995 * 109.88184 * 218.39040 * 17 16 14 40 40 H 1.09002 * 109.88385 * 97.22047 * 17 16 14 41 41 H 0.97001 * 119.99407 * 180.02562 * 22 21 19 42 42 H 1.09002 * 110.36518 * 142.96440 * 27 18 17 43 43 H 1.08995 * 110.36673 * 265.17549 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2923 2.3739 0.0005 5 6 1.9198 3.6035 0.0011 6 6 3.3039 3.6843 0.0005 7 17 4.0791 5.2376 0.0019 8 6 4.0673 2.5359 0.0053 9 6 3.4440 1.2856 -0.0007 10 6 4.2546 0.0527 -0.0014 11 8 3.7087 -1.0337 -0.0016 12 7 5.6001 0.1309 -0.0019 13 6 6.4048 -1.0933 -0.0021 14 6 7.8903 -0.7270 -0.0020 15 1 8.1371 -0.1020 0.8562 16 6 8.7770 -1.9998 -0.0364 17 6 10.0760 -1.4983 -0.7017 18 7 9.7363 -0.2891 -1.4659 19 6 10.6157 0.4701 -2.1909 20 1 10.2648 1.3414 -2.7241 21 6 11.9580 0.1198 -2.2406 22 7 12.3855 -0.9417 -1.5905 23 14 13.1576 1.1559 -3.2290 24 1 13.7234 2.2204 -2.3619 25 1 14.2558 0.2938 -3.7351 26 1 12.4472 1.7769 -4.3757 27 6 8.2911 -0.0329 -1.3277 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.2136 2.3190 0.0005 32 1 1.3292 4.5077 0.0011 33 1 5.1451 2.6030 0.0095 34 1 6.0356 0.9976 -0.0014 35 1 6.1747 -1.6792 -0.8919 36 1 6.1754 -1.6790 0.8881 37 1 8.9749 -2.3592 0.9734 38 1 8.3091 -2.7797 -0.6371 39 1 10.4680 -2.2628 -1.3724 40 1 10.8152 -1.2583 0.0626 41 1 13.3236 -1.1862 -1.6250 42 1 8.0998 1.0385 -1.2679 43 1 7.7468 -0.4685 -2.1656 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028969318.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:56 Heat of formation + Delta-G solvation = -47.495723 kcal Electronic energy + Delta-G solvation = -26395.152031 eV Core-core repulsion = 22466.484658 eV Total energy + Delta-G solvation = -3928.667374 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.71504 -40.25657 -39.15338 -38.69609 -37.14144 -36.02835 -34.35946 -32.78202 -31.46702 -31.02401 -29.84775 -28.19105 -27.32228 -25.76585 -24.48713 -23.12503 -22.14632 -21.49305 -21.21940 -19.60033 -18.83765 -18.25097 -17.75211 -17.07966 -16.83834 -16.63301 -16.53315 -16.25792 -15.87248 -15.75997 -15.47234 -14.82160 -14.69254 -14.47835 -14.25341 -13.95203 -13.81119 -13.55531 -13.41298 -13.08668 -12.96222 -12.81485 -12.75102 -12.61503 -12.30751 -12.02660 -12.01366 -11.88353 -11.83395 -11.66658 -11.53476 -11.45324 -10.90624 -10.69671 -10.34927 -10.04209 -9.23625 -8.88852 -7.84217 -5.19642 -0.33424 0.08971 1.11716 1.46263 1.48185 1.56789 1.75886 2.11633 2.26801 2.50191 2.63253 3.34060 3.50175 3.57864 3.64591 3.82680 3.88039 4.02239 4.03818 4.08337 4.28970 4.33133 4.40976 4.44878 4.57588 4.61808 4.63698 4.72288 4.76861 4.81774 4.92207 5.02709 5.04919 5.07203 5.09072 5.34904 5.37148 5.46500 5.46616 5.68975 5.79037 6.21078 6.29018 6.52440 7.11413 7.20320 7.79053 8.43525 9.26412 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.012804 B = 0.002701 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.238871 B =10364.375496 C =12180.471992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.310 6.310 3 C 0.177 3.823 4 C -0.199 4.199 5 C -0.033 4.033 6 C -0.091 4.091 7 Cl -0.063 7.063 8 C -0.038 4.038 9 C -0.184 4.184 10 C 0.558 3.442 11 O -0.560 6.560 12 N -0.716 5.716 13 C 0.147 3.853 14 C -0.096 4.096 15 H 0.090 0.910 16 C -0.122 4.122 17 C 0.183 3.817 18 N -0.629 5.629 19 C -0.241 4.241 20 H 0.083 0.917 21 C -0.068 4.068 22 N -0.952 5.952 23 Si 0.978 3.022 24 H -0.284 1.284 25 H -0.296 1.296 26 H -0.269 1.269 27 C 0.138 3.862 28 H 0.075 0.925 29 H 0.110 0.890 30 H 0.077 0.923 31 H 0.177 0.823 32 H 0.170 0.830 33 H 0.151 0.849 34 H 0.408 0.592 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.003 0.997 40 H 0.014 0.986 41 H 0.246 0.754 42 H 0.048 0.952 43 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.519 9.399 6.396 29.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.221 6.221 3 C 0.128 3.872 4 C -0.217 4.217 5 C -0.052 4.052 6 C -0.118 4.118 7 Cl -0.034 7.034 8 C -0.057 4.057 9 C -0.188 4.188 10 C 0.346 3.654 11 O -0.440 6.440 12 N -0.369 5.369 13 C 0.023 3.977 14 C -0.116 4.116 15 H 0.109 0.891 16 C -0.161 4.161 17 C 0.058 3.942 18 N -0.355 5.355 19 C -0.370 4.370 20 H 0.101 0.899 21 C -0.261 4.261 22 N -0.602 5.602 23 Si 0.806 3.194 24 H -0.211 1.211 25 H -0.223 1.223 26 H -0.194 1.194 27 C 0.013 3.987 28 H 0.094 0.906 29 H 0.128 0.872 30 H 0.095 0.905 31 H 0.194 0.806 32 H 0.188 0.812 33 H 0.168 0.832 34 H 0.245 0.755 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.022 0.978 40 H 0.032 0.968 41 H 0.055 0.945 42 H 0.067 0.933 43 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -27.541 8.541 6.334 29.522 hybrid contribution 1.416 0.755 -0.640 1.728 sum -26.124 9.295 5.693 28.307 Atomic orbital electron populations 1.23518 0.76158 1.05755 1.03074 1.86372 1.23559 1.25906 1.86268 1.19365 0.90889 0.85996 0.90958 1.21508 1.02098 0.89962 1.08162 1.21374 0.91908 0.99293 0.92583 1.20748 0.93680 0.86718 1.10623 1.98394 1.81200 1.26636 1.97207 1.21153 1.00974 0.89165 0.94418 1.19240 0.91569 0.93107 1.14881 1.18196 0.82217 0.88718 0.76271 1.90793 1.72292 1.29975 1.50935 1.45885 1.05491 1.10678 1.74817 1.21169 0.88041 0.86346 1.02161 1.22427 0.92796 0.97912 0.98448 0.89128 1.22720 0.95339 0.96618 1.01415 1.20916 0.93060 0.87435 0.92758 1.44810 1.03903 1.29140 1.57646 1.19477 0.89019 1.06006 1.22540 0.89877 1.25664 0.98841 0.99532 1.02073 1.70194 1.14297 1.28134 1.47532 0.85081 0.78408 0.77496 0.78379 1.21111 1.22253 1.19373 1.21742 0.84139 0.98065 0.94786 0.90614 0.87201 0.90450 0.80623 0.81242 0.83171 0.75451 0.92216 0.90582 0.89534 0.91079 0.97834 0.96823 0.94461 0.93332 0.96492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.81 113.37 1.11 1.21 16 2 O -0.31 -7.01 8.57 -68.98 -0.59 -7.60 16 3 C 0.18 3.63 6.70 22.84 0.15 3.79 16 4 C -0.20 -2.50 9.03 22.33 0.20 -2.30 16 5 C -0.03 -0.39 9.81 22.32 0.22 -0.17 16 6 C -0.09 -1.47 6.31 22.29 0.14 -1.33 16 7 Cl -0.06 -1.02 28.94 -2.72 -0.08 -1.10 16 8 C -0.04 -0.71 9.31 22.55 0.21 -0.50 16 9 C -0.18 -4.28 5.89 -20.01 -0.12 -4.40 16 10 C 0.56 16.09 7.76 86.70 0.67 16.76 16 11 O -0.56 -20.16 15.16 16.94 0.26 -19.90 16 12 N -0.72 -18.48 5.36 -466.27 -2.50 -20.98 16 13 C 0.15 4.12 5.12 86.38 0.44 4.56 16 14 C -0.10 -3.07 3.10 -9.40 -0.03 -3.10 16 15 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 16 C -0.12 -4.37 6.42 31.78 0.20 -4.17 16 17 C 0.18 9.12 5.37 86.73 0.47 9.59 16 18 N -0.63 -32.37 3.39 -691.97 -2.35 -34.72 16 19 C -0.24 -13.61 10.28 84.03 0.86 -12.74 16 20 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 21 C -0.07 -3.93 5.49 84.86 0.47 -3.47 16 22 N -0.95 -58.07 10.31 21.65 0.22 -57.85 16 23 Si 0.98 46.13 29.55 68.60 2.03 48.16 16 24 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 25 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 26 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 27 C 0.14 5.43 6.41 86.86 0.56 5.99 16 28 H 0.08 0.52 7.66 -2.39 -0.02 0.51 16 29 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.08 0.50 7.66 -2.39 -0.02 0.49 16 31 H 0.18 0.98 6.30 -2.91 -0.02 0.96 16 32 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 33 H 0.15 2.51 6.40 -2.91 -0.02 2.49 16 34 H 0.41 8.92 6.37 -92.71 -0.59 8.33 16 35 H 0.06 1.83 8.10 -2.39 -0.02 1.81 16 36 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 38 H 0.07 2.40 8.04 -2.39 -0.02 2.38 16 39 H 0.00 0.19 7.51 -2.39 -0.02 0.17 16 40 H 0.01 0.75 7.38 -2.39 -0.02 0.73 16 41 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 42 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.02 0.70 8.01 -2.39 -0.02 0.68 16 Total: -1.00 -76.34 367.75 3.00 -73.34 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 0.45 Total: 10.93 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: 5.56 Total: 9.73 kcal Atomic # 7 Polarization: -108.93 SS G_CDS: -4.62 Total: -113.55 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.33 Total: -27.50 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.08 Total: -1.10 kcal Total: -76.34 3.00 -73.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028969318.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.841 kcal (2) G-P(sol) polarization free energy of solvation -76.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds